updated code for model 2 classes preds

Author: e-candeloro

source/1_data_prep.ipynb

@@ -81,7 +81,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 6,
+   "execution_count": 5,
    "id": "1cb6cc97-1893-4648-bee9-f2128e214c52",
    "metadata": {
     "tags": []
@@ -97,16 +97,16 @@
     "lymphocyte_half_box_size = 4.5 # the size of half of the bbox around the lymphocyte dot in um\n",
     "#NOTE: reduced this to 5.0 as the eval script (it was 11.0)\n",
     "monocytes_half_box_size = 5.0 # the size of half of the bbox around the monocytes dot in um\n",
-    "min_spacing = 0.24199951445730394 # NOTE: changed this!\n",
+    "min_spacing = 0.25 # NOTE: in the eval code they use 0.24199951445730394\n",
     "#spacing is the zoom level of the image, in micro-meters per pixel (was rounded to 0.25)\n",
     "\n",
     "# convert the dot annotations (in mm) to polygon bounding boxes\n",
-    "dot2polygon(xml_path, lymphocyte_half_box_size, monocytes_half_box_size, min_spacing, output_path)"
+    "#dot2polygon(xml_path, lymphocyte_half_box_size, monocytes_half_box_size, min_spacing, output_path)"
    ]
   },
   {
    "cell_type": "code",
-   "execution_count": 7,
+   "execution_count": 6,
    "id": "4ab2cd84-a475-4433-94b6-c1d259e1af07",
    "metadata": {},
    "outputs": [
@@ -308,7 +308,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 8,
+   "execution_count": 7,
    "id": "a8fc5aaf-c068-4b8f-bf37-91a609a234d5",
    "metadata": {},
    "outputs": [],
@@ -353,7 +353,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": 8,
    "id": "45e85653-a4b7-4977-a143-b15bad959828",
    "metadata": {},
    "outputs": [