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Store symbolic model during model import #2659

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dweindl opened this issue Mar 13, 2025 · 0 comments
Open

Store symbolic model during model import #2659

dweindl opened this issue Mar 13, 2025 · 0 comments
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@dweindl
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dweindl commented Mar 13, 2025

Store the DEModel during import.

We will need (parts of) the symbolic model for PEtab v2 import (#2662) to update the model state after simulation condition changes. Specifically, we need to know which states are defined in terms of amounts or concentrations and the respective compartment volumes.

This could also be recomputed, but storing the symbolic model seems more convenient for now.

EDIT: alternatively, we need a Model function to compute the updated state that does not process SBML initial assignments.

@dweindl dweindl added the python label Mar 13, 2025
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