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Make all SBML model quantities accessible in the imported model #2661

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dweindl opened this issue Mar 13, 2025 · 0 comments
Open

Make all SBML model quantities accessible in the imported model #2661

dweindl opened this issue Mar 13, 2025 · 0 comments
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@dweindl
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dweindl commented Mar 13, 2025

Currently, compartments of an SBML model that have constant size will not explicitly show up in the amici model. While this is good in terms of memory, it is not really convenient. It would be nice to have all model quantities available in the imported model.

For example, so far, any interconversion of amounts/concentrations after simulation requires going back to the original SBML model.
@dweindl dweindl added the SBML SBML import related label Mar 13, 2025
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