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We need to revise the PEtab import to handle the upcoming PEtab v2 format.
This implies:
New parameter mapping
instead of "preequilibration" and simulation, there will be a variable number of periods (at first, more than 2 conditions will only be supported through the JAX interface)
the mapped values will not be identifier or float, but could also be more complex math expressions
the values for reinitialization may depend on the model state and parameters (this also needs to be accounted for when computing sensitivities)
Auto-upconversion of PEtab v1 problems, to avoid duplicating the import logic
...
The text was updated successfully, but these errors were encountered:
The initial import implementation for sundials-based simulations will happen through translating experiments to events (PEtab-dev/libpetab-python#370).
To make that more robust, ideally #2185 should be continued, to support stopping at (constant) parameter-dependent fixed trigger times without root-finding.
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We need to revise the PEtab import to handle the upcoming PEtab v2 format.
This implies:
The text was updated successfully, but these errors were encountered: