v25.04

What's Changed

• Update AMReX for SyCL bug fix by @jrood-nrel in #605
• Specify clang-tidy config file location by @jrood-nrel in #606
• Update PelePhysics and AMReX by @jrood-nrel in #609
• Landon/add spray post func by @ldowen in #615
• Update amrex-hydro by @marchdf in #619
• Update PelePhysics and AMReX by @jrood-nrel in #612
• Rogue omp pragma near new ParallelFor by @baperry2 in #620
• Add runtime Diagnostics added to PelePhysics by @esclapez in #616
• Add a 'coordinate' derived var. by @esclapez in #623
• Simplify spray data by @ldowen in #629
• Simplify move transport to ec by @marchdf in #632
• Simplify diffusion flux calls by removing need for sparse EB struct by @marchdf in #631
• Fix some postprocessing by @marchdf in #635
• Skip covered cells for transport coeff calc by @marchdf in #637
• Add documentation of flag for EB checkpoint reading by @marchdf in #639
• Make tangential velocity weights const on gpu instead of thread private by @marchdf in #640
• Update PelePhysics by @baperry2 in #630
• Plt restart bug by @baperry2 in #645
• Reorganize MOL file by @marchdf in #636
• Add cavity flame case by @jrood-nrel in #649
• Fix flux factor multiplication by @marchdf in #650
• Redistribution move by @baperry2 in #647
• Fix the if condition on the fillpatcher reset by @marchdf in #651
• Fix static diag vector memory leak by @marchdf in #652
• Remove sort in init EB and increase parallelism by @marchdf in #644
• Update Intel OneAPI CI by @jrood-nrel in #653
• Update PeleMP submodule by @ldowen in #646
• Update PelePhysics to fix SUNDIALS directory detection by @jrood-nrel in #654
• Try to use older version of cppcheck by @jrood-nrel in #655
• Consolidate flux register calculation into one place by @marchdf in #657
• Consolidate into a post redist function by @marchdf in #658
• Reorg some hydro routines by @marchdf in #660
• add BC checks in Godunov cmpflx by @baperry2 in #662
• Remove track grid loses by @marchdf in #661
• Add ccache stuff by @jrood-nrel in #659
• Clang tidy fixes by @marchdf in #667
• Add in some more infrastructure for EB godunov by @marchdf in #663
• Add Re-redistribution by @marchdf in #664
• Test ccache by @jrood-nrel in #666
• Try using managed memory for fcompare by @jrood-nrel in #669
• Change bcnormal interface to allow for better reflections at walls by @baperry2 in #665
• Add plm iorder flag back to PLM by @marchdf in #668
• Revert "Try using managed memory for fcompare" by @jrood-nrel in #670
• Update docs and remove fortran references and code by @marchdf in #672
• Introduce mol_iorder flag by @marchdf in #671
• Fix MassCons nightly test by @baperry2 in #674
• Add pipefail to CI. Update AMReX. by @jrood-nrel in #675
• Suppress lto-wrapper warning in CI by @jrood-nrel in #676
• Reduce order at user BCs for Godunov by @baperry2 in #673
• Fix datlog and update amrex by @marchdf in #677
• Update tags with the use of iv and pass in ebflag by @marchdf in #678
• Revert amrex update by @marchdf in #681
• Fix reflux factor for MOL by @marchdf in #679
• Make the tagging aware of EBs by @marchdf in #682
• Update gitignore by @marchdf in #683
• Fix re-redistribution by @marchdf in #680
• Use sundials submodule for make TPL by @jrood-nrel in #686
• Isothermal domain bc by @baperry2 in #684
• Update citations by @marchdf in #687
• Update submods by @marchdf in #688
• Update AMReX and PelePhysics by @jrood-nrel in #690
• Increase ghost cells for the level mask by @marchdf in #691
• Update submodules by @jrood-nrel in #693
• Bump setup python version by @marchdf in #694
• Add dependatbot by @marchdf in #695
• Change default to not use slopes in SRD for robustness by @baperry2 in #698
• Add codespell by @marchdf in #697
• Check for warnings in mechanisms by @jrood-nrel in #696
• Reproducibility for EB covered state by @baperry2 in #702
• Add ccache to clang-tidy by @jrood-nrel in #701
• Add isooctane_lu inputs for PMF case by @jrood-nrel in #705
• Fix derive for state variables with ghost cells by @baperry2 in #707
• Some improvements and testing for the EB covered state by @baperry2 in #704
• remove plt vars with nans from eb-c3 by @baperry2 in #708
• remove dependence of Filter on Utilities by @baperry2 in #710
• Add some PeleC options to the GNUmakefiles by @jrood-nrel in #709
• Regex clang tidy by @baperry2 in #711
• Remove filter files that will now live in PelePhysics by @baperry2 in #714
• remove google test entry in .gitmodules file by @baperry2 in #716
• Allow manual dispatch of CI workflow by @baperry2 in #720
• Update pelephysics submodule by @marchdf in #715
• Fix warnings in pelephysics by @marchdf in #723
• Don't do FPE checking on MacOS by @jrood-nrel in #727
• abort on unused parmparse variables in input file in tests by @baperry2 in #725
• Add PeleMP cases for soot and spray by @marchdf in #724
• Update github cache cleanup by @jrood-nrel in #728
• Try using macos for more RAM when running clang-tidy by @jrood-nrel in #729
• Remove prob parm passing in spray by @marchdf in #730
• Bump Submodules/PelePhysics from b7d592f to 87f9706 by @dependabot in #734
• MD's xmas present: EB Godunov by @marchdf in #731
• Bump Submodules/PelePhysics from 87f9706 to 771ab82 by @dependabot in #740
• Minor tweak to EB-C7 by @marchdf in #742
• initialize diagnostics on restart by @baperry2 in #748
• Bump Submodules/PelePhysics from 771ab82 to e3f2077 by @dependabot in #750
• Fix Wunreachable-code by @marchdf in #757
• Fix BC Types due to breaking AMReX change by @baperry2 in #758
• Bump Submodules/PelePhysics from c125141 to c2d6577 by @dependabot in #761
• Bump Submodules/PelePhysics from c2d6577 to 71fdec3 by @dependabot in #765
• Add citation by @marchdf in #766
• Fix the doi url by @marchdf in #767
• Better Problem Specific Function capability by @baperry2 in #743
• Bump Submodules/PelePhysics from 71fdec3 to 50b990b by @dependabot in #770
• Add STL geom_type for EB in Source/InitEB.cpp by @ejyoo921 in #771
• Bump Submodules/PelePhysics from 50b990b to deee71e by @dependabot in #775
• Update dev model by @marchdf in #776
• Update pelephysics by @marchdf in #779
• Implement the state prescription at EB for the Riemann solver by @marchdf in #774
• Bump Submodules/PelePhysics from c0f30b9 to 6c1a06e by @dependabot in #786
• GH action deprecation fix by @marchdf in #792
• Bump Submodules/PelePhysics from 6c1a06e to 5f197f2 by @dependabot in #791
• Run TGReact test by @baperry2 in #793
• Bump Submodules/PelePhysics from 5f197f2 to 1bea1bf by @dependabot in #795
• Bump Submodules/PelePhysics from 1bea1bf to e4621c5 by @dependabot in #804
• Fix codespell by @marchdf in #806
• Update PelePhysics by @jrood-nrel in #807
• Remove unused OMP variables by @marchdf in #811
• fix interpolation in PMF cases by @baperry2 in #808
• Modifications for PelePhysics PeleParams stuff by @baperry2 in #812
• Bump Submodules/PelePhysics from b17d6b7 to 19ccf85 by @dependabot in #813
• remove HIT generation script, now lives in PelePhysics by @baperry2 in #817
• Additional SGS Models by @JhonCordova in #802
• use template to simplify a bunch of derive functions by @baperry2 in #819
• update pp to get updated amrex for kestrel by @baperry2 in #820
• Shallow clone the submodules by @marchdf in #821
• Update pelephysics by @marchdf in #822
• eb-converging-nozzle: turn on diffusion so sponge layers work by @baperry2 in #826
• Change CDash project name by @jrood-nrel in #828
• Enable CTest earlier by @jrood-nrel in #829
• EB-FlowOverCylinder Case by @dmontgomeryNREL in #827
• Update some paths for test files by @jrood-nrel in #832
• Update PelePhysics by @baperry2 in #831
• Fix dm_as_fine for EB Godunov by @marchdf in #833
• Run PLM Re-Re test by @baperry2 in #834
• Bump Submodules/PelePhysics from 48fac13 to fe882f0 by @dependabot in #840
• update clang format action version to avoid distutils issue by @baperry2 in #841
• Remove advection from auxiliary quantities B_k by @dmontgomeryNREL in #839
• Bump Submodules/PelePhysics from fe882f0 to 1e7eb65 by @dependabot in #842
• Fix bug in LES coefficient calculation. by @marchdf in #846
• Fix bug in SFS calculation of dynamic Smagorinsky by @marchdf in #849
• Add report for documentation warnings by @jrood-nrel in #851
• Bump Submodules/PelePhysics from 060a7ae to b703644 by @dependabot in #852
• Some fixes for warnings in 2D by @baperry2 in #855
• Update clang-tidy by @marchdf in #856
• rotating reference frames capability by @hsitaram in #850
• fix 'paraview' spelling in the readme file by @pa-one55 in #864
• pin intel-oneapi version in CI by @baperry2 in #866
• Bump Submodules/PelePhysics from 5761481 to 327aadb by @dependabot in #870
• Fix some python functionality by @marchdf in #871
• Bump Submodules/PelePhysics from 327aadb to f54b084 by @dependabot in #873
• Bump Submodules/PelePhysics from f54b084 to 9625a85 by @dependabot in #878
• Bump Submodules/PelePhysics from 9625a85 to 760e2fe by @dependabot in #880
• Update CI to ubuntu-24.04 by @jrood-nrel in #869
• Try to update docs deploy action by @jrood-nrel in #881
• Try to fix docs deployment by @jrood-nrel in #883
• Commit to check that the docs deploy by @jrood-nrel in #884
• Check that docs deploy by @jrood-nrel in #885
• Check that docs deploy by @jrood-nrel in #886
• Bump Submodules/PelePhysics from 760e2fe to b462d64 by @dependabot in #890
• add link to Pele pubs page in README by @baperry2 in #893
• Bump Submodules/PelePhysics from b462d64 to 88b9f99 by @dependabot in #892
• Bump Submodules/PelePhysics from 88b9f99 to 652a64f by @dependabot in #896
• Fix bug in indexing for EB-inflow hyperbolics by @baperry2 in #895
• Bump Submodules/PelePhysics from 652a64f to eedcf0b by @dependabot in #897
• Bump Submodules/PelePhysics from eedcf0b to 4e9548e by @dependabot in #906
• Use ubuntu 24 in all CI by @jrood-nrel in #907
• Fix some warnings by @baperry2 in #915
• Bump Submodules/PelePhysics from 4e9548e to 8b942d4 by @dependabot in #914
• correct soot zerod plotting by @baperry2 in #916
• CI Updates - Include reference comparison by @baperry2 in #917
• Update PelePhysics to 25.04 by @baperry2 in #930

New Contributors

• @dependabot made their first contribution in #734
• @ejyoo921 made their first contribution in #771
• @JhonCordova made their first contribution in #802
• @dmontgomeryNREL made their first contribution in #827
• @pa-one55 made their first contribution in #864

Full Changelog: v23.03...v25.04