Merge pull request #420 from Australian-Imaging-Service/phi-finder #210
Workflow file for this run
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| # This workflows will upload a Python Package using Twine when a release is created | |
| # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries | |
| name: Build release | |
| on: | |
| push: | |
| branches: [ main, develop ] | |
| tags: [ '*' ] | |
| pull_request: | |
| branches: [ main, develop ] | |
| workflow_dispatch: # Allow manual triggering by a user with write access to this repo | |
| permissions: | |
| contents: read | |
| packages: write # required for pushing to ghcr.io | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| spec: | |
| - quality-control/phi-finder | |
| steps: | |
| - name: Removed unnecessary tools to free space | |
| run: | | |
| sudo rm -rf /usr/share/dotnet | |
| sudo rm -rf "$AGENT_TOOLSDIRECTORY" | |
| - name: Install packages | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y yq | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Get release tag | |
| run: | | |
| git fetch --prune --unshallow | |
| echo "RELEASE=`echo $(git describe --tags --abbrev=0)`" >> $GITHUB_ENV | |
| - name: Unset header | |
| # checkout@v2 adds a header that makes branch protection report errors | |
| # because the Github action bot is not a collaborator on the repo | |
| run: git config --local --unset http.https://github.com/.extraheader | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.11' | |
| - name: Update build tools | |
| run: python -m pip install --upgrade pip | |
| - name: Install dependencies & pipelines package | |
| run: | | |
| pip install -r requirements.txt | |
| pip install . | |
| # pip install git+https://github.com/ReproNim/neurodocker.git@master | |
| - name: Login to Docker registry | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: ghcr.io | |
| username: tclose | |
| password: ${{ secrets.GHCR_TOKEN }} | |
| - name: Get the tag of the Docker image to be built | |
| id: version | |
| run: | | |
| SPEC_VERSION=$(yq -r '.version' ./specs/australian-imaging-service/${{ matrix.spec }}.yaml) | |
| PIPELINE_NAME="${{ matrix.spec }}" | |
| PIPELINE_NAME="${PIPELINE_NAME//\//.}" | |
| IMAGE_TAG=ghcr.io/australian-imaging-service/${PIPELINE_NAME}:${SPEC_VERSION} | |
| echo "IMAGE_TAG=$IMAGE_TAG" | |
| echo "IMAGE_TAG=$IMAGE_TAG" >> $GITHUB_ENV | |
| - name: Build and push container images | |
| env: | |
| P2A_DOCKER_USER: tclose | |
| P2A_ACCESS_TOKEN: ${{ secrets.GHCR_TOKEN }} | |
| run: > | |
| pydra2app make xnat ./specs/australian-imaging-service/${{ matrix.spec }}.yaml | |
| --registry ghcr.io --loglevel info | |
| --resources-dir ./resources --spec-root ./specs --dont-check-registry --source-package . | |
| # --release pipelines-metapackage $RELEASE --tag-latest --check-registry --clean-up | |
| - name: List Docker images | |
| run: docker images | |
| - name: Push built Docker image | |
| id: deployable | |
| if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') | |
| run: docker push ${{ env.IMAGE_TAG }} |