moved tests inside pytestable functions

Author: tclose

tests/test_cli_docs.py

@@ -7,16 +7,18 @@
 
 runner = CliRunner()
 
-os.chdir(PKG_PATH)
 
-results = runner.invoke(
-    make_docs,
-    [
-        "australian-imaging-service",
-        "docs/pipelines",
-        "--flatten",
-        "--default-data-space",
-        "arcana.common:Clinical",
-    ],
-    catch_exceptions=False,
-)
+def test_make_docs():
+    os.chdir(PKG_PATH)
+
+    results = runner.invoke(
+        make_docs,
+        [
+            "australian-imaging-service",
+            "docs/pipelines",
+            "--flatten",
+            "--default-data-space",
+            "arcana.common:Clinical",
+        ],
+        catch_exceptions=False,
+    )

tests/test_make.py

@@ -7,14 +7,16 @@
 
 runner = CliRunner()
 
-results = runner.invoke(
-    make,
-    [
-        f"{PKG_PATH}/australian-imaging-service/mri/human/neuro/bidsapps/fmriprep.yaml",
-        "xnat:XnatApp",
-        "--raise-errors",
-    ],
-    catch_exceptions=False,
-)
 
-print(show_cli_trace(results))
+def test_make_fmriprep():
+    results = runner.invoke(
+        make,
+        [
+            f"{PKG_PATH}/australian-imaging-service/mri/human/neuro/bidsapps/fmriprep.yaml",
+            "xnat:XnatApp",
+            "--raise-errors",
+        ],
+        catch_exceptions=False,
+    )
+
+    print(show_cli_trace(results))

tests/test_phi_finder.py

@@ -10,42 +10,42 @@
 runner = CliRunner()
 
 
-result = runner.invoke(
-    make,
-    [
-        "xnat",
-        (
-            f"{PKG_PATH}/specs/"
-            "australian-imaging-service/quality-control/phi-finder.yaml"
-        ),
-        "--spec-root",
-        f"{PKG_PATH}/specs",
-        "--registry",
-        "ghcr.io",
-        "--for-localhost",
-        "--use-local-packages",
-        "--raise-errors",
-    ],
-)
-
-assert not result.exit_code, show_cli_trace(result)
-
-
-xlogin = xnat4tests.connect()
-
-cmd_id = install_cs_command(
-    "ghcr.io/australian-imaging-service/quality-control.phi-finder:2025.7.2",
-    xlogin,
-    enable=True,
-    projects_to_enable=["dummydicomproject"],
-    replace_existing=True,
-    command_name="phi-finder",
-)
-
-launch_cs_command(
-    cmd_id,
-    xlogin=xlogin,
-    inputs={},
-    project_id="dummydicomproject",
-    session_id="dummydicomsession",
-)
+def test_phi_finder():
+    result = runner.invoke(
+        make,
+        [
+            "xnat",
+            (
+                f"{PKG_PATH}/specs/"
+                "australian-imaging-service/quality-control/phi-finder.yaml"
+            ),
+            "--spec-root",
+            f"{PKG_PATH}/specs",
+            "--registry",
+            "ghcr.io",
+            "--for-localhost",
+            "--use-local-packages",
+            "--raise-errors",
+        ],
+    )
+
+    assert not result.exit_code, show_cli_trace(result)
+
+    xlogin = xnat4tests.connect()
+
+    cmd_id = install_cs_command(
+        "ghcr.io/australian-imaging-service/quality-control.phi-finder:2025.7.2",
+        xlogin,
+        enable=True,
+        projects_to_enable=["dummydicomproject"],
+        replace_existing=True,
+        command_name="phi-finder",
+    )
+
+    launch_cs_command(
+        cmd_id,
+        xlogin=xlogin,
+        inputs={},
+        project_id="dummydicomproject",
+        session_id="dummydicomsession",
+    )