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version 0.0.13
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@borauyar borauyar released this 04 Jun 20:20
· 148 commits to master since this release
v0.0.13
1db69c2

Major updates since 0.0.10 release:

  • Added support to configure the mapper (STAR + HISAT2)
  • Clean up intermediate SAM files after sorted BAM files are obtained
  • FASTQC and TRIM-GALORE are dropped from the pipeline. Instead a faster package (fastp), which handles
    both read trimming/filtering and quality control reporting is added to the pipeline.
  • The updates should increase both the speed (particularly in read filtering), maximum memory
    consumption (when HISAT2 is used) and disk space usage (by removing unused SAM files)
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