Review init modules

[saramonzon]

Review init modules ordering param checking:

1. Check command line and cli params
2. Check and load config params
3. Review that no extra config is used if no needed
4. If needed catch the error if requiered configuration is not in the extra config and creat a meaningful message indicating that the conf must be added to extra config

Modules to check:

• build-schema @saramonzon
• wrapper @saramonzon
• upload_results
• read_lab_metadata
• validate @Shettland
• upload_to_ena
• upload_to_gisaid
• logs_to_excel
• send_email
• download Done