errors in plapt model

[Jayasree-R1]

I cloned the git repo and tried running code base as it is after activating PLAPT. Did not change code base at all.
PLAPT activated successfully.

Next I ran below command.
python3 plapt_cli.py -p "SEQUENCE1" -m "SMILES1" in command line

I replaced SEQUENCE1 with protein sequence and SMILES1 with ligand SMILES structure

My terminal shows below error:
sqlite3.OperationalError: no such column: "size" - should this be a string literal in single-quotes?

Please find the attached screenshot for error:

I checked tables and schema and found out there is a column called size in a table called cache. See image below:

Is the column named size mistaken to attribute size, as i see it is quoted in double quotes in the code base?

I implemented portBERT and chemBERTa independently of PLAPT and got the protein embeddingd(1024) and ligand embeddings(768). I now combined them to get protein-ligand combined embeddings (1792).

I might not need entire PLAPT implementation since the code base is not running. I only want to understand the BNN implementation in PLAPT.

Please help me with the same.

Thank you!

[AlirezaSabounchi]

Hello! I encountered the same error earlier. This is a common error with the libsqlite 3.49.0 version .Downgrading to version 3.48.0 or below should resolve this error.
@Jayasree-R1

[Jayasree-R1]

I ended up implementing my own version of PLAPT now. But thank you — I'll try your inputs. This helps with validating my model.