From eca41bb3a61508949ac6f381c959996878a313d6 Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Tue, 17 Jun 2025 13:56:45 +0100
Subject: [PATCH 01/20] Update setup.py, build_package.yml ad
 verify_package.yml

Add Python 11 and 12 to workflows and config file
---
 .github/workflows/build_package.yml  | 2 +-
 .github/workflows/verify_package.yml | 2 +-
 setup.py                             | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/build_package.yml b/.github/workflows/build_package.yml
index ea003859..00a569bd 100644
--- a/.github/workflows/build_package.yml
+++ b/.github/workflows/build_package.yml
@@ -10,7 +10,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [ '3.9', '3.10' ]
+        python-version: [ '3.9', '3.10', '3.11', '3.12' ]
 
     steps:
       - uses: actions/checkout@v4
diff --git a/.github/workflows/verify_package.yml b/.github/workflows/verify_package.yml
index 76458826..58775495 100644
--- a/.github/workflows/verify_package.yml
+++ b/.github/workflows/verify_package.yml
@@ -8,7 +8,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [ '3.9', '3.10' ]
+        python-version: [ '3.9', '3.10', '3.11', '3.12' ]
 
     steps:
       - uses: actions/checkout@v4
diff --git a/setup.py b/setup.py
index 7c5d9b04..5f6e9dce 100644
--- a/setup.py
+++ b/setup.py
@@ -63,7 +63,7 @@
             # "xesmf>=0.3.0",  # Optional. Not part of main package
             # "esmpy>=8.0.0",  # Optional. Not part of main package
         ],
-        "python_requires": ">3.8,<3.11",
+        "python_requires": ">3.8,<3.13",
         "packages": ["coast", "coast.data", "coast._utils", "coast.diagnostics"],
         "include_package_data": True,
         "github": "British-Oceanographic-Data-Centre",

From 1ccba94fca7ee3befb4870ce1958282ce4a3f972 Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Fri, 20 Jun 2025 11:14:08 +0100
Subject: [PATCH 02/20] Update build.sh

Update script to install hdf5 dependency
---
 build.sh | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/build.sh b/build.sh
index 84f1c086..7c6bc556 100755
--- a/build.sh
+++ b/build.sh
@@ -8,5 +8,10 @@ echo "Cleaning up old versions..."
 rm -rf ./build/* ./dist/* ./Example_Python_Package.egg-info
 echo "Building package for distribution..."
 ./venv/bin/python ./setup.py sdist bdist_wheel
+CONDA_BASE=$(conda info --base)
+source "${CONDA_BASE}/etc/profile.d/conda.sh"
+conda create -n coast-toolbox python=3.10
+conda activate coast-toolbox
+conda install conda-forge::hdf5
 
 echo "Done!"

From 6f44f2da75241c106c2d5626682893c5ae23f793 Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Fri, 20 Jun 2025 12:02:38 +0100
Subject: [PATCH 03/20] Update setup_environment.sh

Add conda command to clean unused packages and caches
---
 setup_environment.sh | 1 +
 1 file changed, 1 insertion(+)

diff --git a/setup_environment.sh b/setup_environment.sh
index d3d0ab60..41bb9939 100755
--- a/setup_environment.sh
+++ b/setup_environment.sh
@@ -11,6 +11,7 @@ echo "Installing required packages..."
 ./venv/bin/pip install setuptools wheel twine
 CONDA_BASE=$(conda info --base)
 source "${CONDA_BASE}/etc/profile.d/conda.sh"
+conda clean --all
 conda env update --prune --file environment.yml 
 conda activate coast
 

From 203ad2aa445556eb560e30b4079292c6c3bf4369 Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Fri, 20 Jun 2025 13:15:40 +0100
Subject: [PATCH 04/20] Update setup_environment.sh

Set conda output verbosity to level 3
---
 setup_environment.sh | 1 +
 1 file changed, 1 insertion(+)

diff --git a/setup_environment.sh b/setup_environment.sh
index 41bb9939..246be967 100755
--- a/setup_environment.sh
+++ b/setup_environment.sh
@@ -12,6 +12,7 @@ echo "Installing required packages..."
 CONDA_BASE=$(conda info --base)
 source "${CONDA_BASE}/etc/profile.d/conda.sh"
 conda clean --all
+conda config --set verbosity 3 --env
 conda env update --prune --file environment.yml 
 conda activate coast
 

From 8250aa17f0b46a769fc2c31e21badc0e58640dab Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Fri, 20 Jun 2025 13:32:38 +0100
Subject: [PATCH 05/20] Update setup_environment.sh

Remove conda clean command
---
 setup_environment.sh | 1 -
 1 file changed, 1 deletion(-)

diff --git a/setup_environment.sh b/setup_environment.sh
index 246be967..9f8d09ea 100755
--- a/setup_environment.sh
+++ b/setup_environment.sh
@@ -11,7 +11,6 @@ echo "Installing required packages..."
 ./venv/bin/pip install setuptools wheel twine
 CONDA_BASE=$(conda info --base)
 source "${CONDA_BASE}/etc/profile.d/conda.sh"
-conda clean --all
 conda config --set verbosity 3 --env
 conda env update --prune --file environment.yml 
 conda activate coast

From ea930e127fea759ffc599680106eadd5289341ce Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Fri, 20 Jun 2025 13:33:59 +0100
Subject: [PATCH 06/20] Update verify_package.yml

Add conda clean to remove unused packages and caches. Also, add conda command to set conda output verbosity to level 3
---
 .github/workflows/verify_package.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.github/workflows/verify_package.yml b/.github/workflows/verify_package.yml
index 58775495..03846d71 100644
--- a/.github/workflows/verify_package.yml
+++ b/.github/workflows/verify_package.yml
@@ -34,6 +34,8 @@ jobs:
         run: |
           CONDA_BASE=$(conda info --base)
           source "${CONDA_BASE}/etc/profile.d/conda.sh"
+          conda clean --all
+          conda config --set verbosity 3 --env
           conda env update --prune --file environment.yml 
           conda activate coast
           sudo apt-get update

From fe2f20010cbe6c36ca83470ca4b19cc7eff538ce Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Fri, 20 Jun 2025 14:16:46 +0100
Subject: [PATCH 07/20] Update verify_package.yml

Remove conda clean command
---
 .github/workflows/verify_package.yml | 1 -
 1 file changed, 1 deletion(-)

diff --git a/.github/workflows/verify_package.yml b/.github/workflows/verify_package.yml
index 03846d71..9cc19313 100644
--- a/.github/workflows/verify_package.yml
+++ b/.github/workflows/verify_package.yml
@@ -34,7 +34,6 @@ jobs:
         run: |
           CONDA_BASE=$(conda info --base)
           source "${CONDA_BASE}/etc/profile.d/conda.sh"
-          conda clean --all
           conda config --set verbosity 3 --env
           conda env update --prune --file environment.yml 
           conda activate coast

From 182a0760a1ec07880c7c9e0c9f9f47d785568903 Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Fri, 20 Jun 2025 14:44:25 +0100
Subject: [PATCH 08/20] Update build.sh

Remove conda commands to create conda environment and install hdf5 dependency
---
 build.sh | 5 -----
 1 file changed, 5 deletions(-)

diff --git a/build.sh b/build.sh
index 7c6bc556..84f1c086 100755
--- a/build.sh
+++ b/build.sh
@@ -8,10 +8,5 @@ echo "Cleaning up old versions..."
 rm -rf ./build/* ./dist/* ./Example_Python_Package.egg-info
 echo "Building package for distribution..."
 ./venv/bin/python ./setup.py sdist bdist_wheel
-CONDA_BASE=$(conda info --base)
-source "${CONDA_BASE}/etc/profile.d/conda.sh"
-conda create -n coast-toolbox python=3.10
-conda activate coast-toolbox
-conda install conda-forge::hdf5
 
 echo "Done!"

From 19b7e8f89b02aae79915b5ca77a288581885b161 Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Tue, 24 Jun 2025 11:17:02 +0100
Subject: [PATCH 09/20] Update setup.py and environment.yml

Update version to cython dependency
---
 environment.yml | 2 +-
 setup.py        | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/environment.yml b/environment.yml
index a21a943d..11906a7d 100644
--- a/environment.yml
+++ b/environment.yml
@@ -4,7 +4,7 @@ channels:
   - nodefaults
 dependencies:
   - python==3.10
-  - cython==3.1.1
+  - cython<3.0.0
   - cartopy==0.23.0
   - gsw==3.6.19
   - xarray[complete]==2023.7.0
diff --git a/setup.py b/setup.py
index 5f6e9dce..dac1bd73 100644
--- a/setup.py
+++ b/setup.py
@@ -53,7 +53,7 @@
             "aiohttp==3.11.13",
             "tqdm==4.67.1",
             "pyproj==3.6.1",
-            "cython==3.1.1",
+            "cython<3.0.0",
             "cartopy==0.23.0",
             "h5py==3.6.0",
             "zarr==2.18.2",

From 34f3caab953dd0bebc5e2bf48c6c57027dd95cda Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Tue, 24 Jun 2025 11:26:44 +0100
Subject: [PATCH 10/20] Update build.sh

Add conda commands to install hdf5 dependency
---
 build.sh | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/build.sh b/build.sh
index 84f1c086..7c6bc556 100755
--- a/build.sh
+++ b/build.sh
@@ -8,5 +8,10 @@ echo "Cleaning up old versions..."
 rm -rf ./build/* ./dist/* ./Example_Python_Package.egg-info
 echo "Building package for distribution..."
 ./venv/bin/python ./setup.py sdist bdist_wheel
+CONDA_BASE=$(conda info --base)
+source "${CONDA_BASE}/etc/profile.d/conda.sh"
+conda create -n coast-toolbox python=3.10
+conda activate coast-toolbox
+conda install conda-forge::hdf5
 
 echo "Done!"

From b6e20c06306cc5e340decfcd7191688a06e0a28e Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Tue, 24 Jun 2025 11:36:11 +0100
Subject: [PATCH 11/20] Update setup.py

Move cython dependency to be installed before PyYAML dependency
---
 setup.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/setup.py b/setup.py
index dac1bd73..7493f9ad 100644
--- a/setup.py
+++ b/setup.py
@@ -31,6 +31,7 @@
         "keywords": ["NEMO", "shallow water", "ocean assessment"],
         "project_urls": {"documentation": "https://british-oceanographic-data-centre.github.io/COAsT/"},
         "install_requires": [
+            "cython<3.0.0",
             "PyYAML==6.0",
             "oyaml==1.0",
             "pytest==7.1.1",
@@ -53,7 +54,6 @@
             "aiohttp==3.11.13",
             "tqdm==4.67.1",
             "pyproj==3.6.1",
-            "cython<3.0.0",
             "cartopy==0.23.0",
             "h5py==3.6.0",
             "zarr==2.18.2",

From 6fbeb41aedbfd19c5c18610a991a765ba18cb424 Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Tue, 24 Jun 2025 12:08:04 +0100
Subject: [PATCH 12/20] Update build.sh

Move conda commands to be run before installing the rest of dependencies
---
 build.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/build.sh b/build.sh
index 7c6bc556..46e01e49 100755
--- a/build.sh
+++ b/build.sh
@@ -7,11 +7,11 @@ mkdir -p build dist
 echo "Cleaning up old versions..."
 rm -rf ./build/* ./dist/* ./Example_Python_Package.egg-info
 echo "Building package for distribution..."
-./venv/bin/python ./setup.py sdist bdist_wheel
 CONDA_BASE=$(conda info --base)
 source "${CONDA_BASE}/etc/profile.d/conda.sh"
 conda create -n coast-toolbox python=3.10
 conda activate coast-toolbox
 conda install conda-forge::hdf5
+./venv/bin/python ./setup.py sdist bdist_wheel
 
 echo "Done!"

From f713321e20918b6b78010e6fd38cf15556d1ad4c Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Tue, 24 Jun 2025 18:00:46 +0100
Subject: [PATCH 13/20] Update config files

Update config files to install specific versions of cython and PyYAML depedencies. Also, activate conda environment in setup-environment, build-package and generate-conda-metadata steps
---
 build.sh               | 10 +++-------
 environment.yml        |  4 ++--
 generate_conda_meta.sh |  2 +-
 setup.py               |  4 ++--
 setup_environment.sh   | 10 ++--------
 5 files changed, 10 insertions(+), 20 deletions(-)

diff --git a/build.sh b/build.sh
index 46e01e49..2f918362 100755
--- a/build.sh
+++ b/build.sh
@@ -7,11 +7,7 @@ mkdir -p build dist
 echo "Cleaning up old versions..."
 rm -rf ./build/* ./dist/* ./Example_Python_Package.egg-info
 echo "Building package for distribution..."
-CONDA_BASE=$(conda info --base)
-source "${CONDA_BASE}/etc/profile.d/conda.sh"
-conda create -n coast-toolbox python=3.10
-conda activate coast-toolbox
-conda install conda-forge::hdf5
-./venv/bin/python ./setup.py sdist bdist_wheel
+conda activate coast
+python ./setup.py sdist bdist_wheel
 
-echo "Done!"
+echo "Done!"
\ No newline at end of file
diff --git a/environment.yml b/environment.yml
index 11906a7d..292d7f16 100644
--- a/environment.yml
+++ b/environment.yml
@@ -4,7 +4,7 @@ channels:
   - nodefaults
 dependencies:
   - python==3.10
-  - cython<3.0.0
+  - cython==0.29.37
   - cartopy==0.23.0
   - gsw==3.6.19
   - xarray[complete]==2023.7.0
@@ -31,5 +31,5 @@ dependencies:
   - spyder==6.0.7
   - jupyterlab==4.4.3
   - aiohttp==3.11.13
-  - PyYAML==6.0
+  - PyYAML==5.4.1
   - oyaml==1.0
\ No newline at end of file
diff --git a/generate_conda_meta.sh b/generate_conda_meta.sh
index 132034a9..1d35e4e0 100644
--- a/generate_conda_meta.sh
+++ b/generate_conda_meta.sh
@@ -1,3 +1,3 @@
 #!/bin/bash
-
+conda activate coast
 python setup.py conda
diff --git a/setup.py b/setup.py
index 7493f9ad..e983a439 100644
--- a/setup.py
+++ b/setup.py
@@ -31,8 +31,8 @@
         "keywords": ["NEMO", "shallow water", "ocean assessment"],
         "project_urls": {"documentation": "https://british-oceanographic-data-centre.github.io/COAsT/"},
         "install_requires": [
-            "cython<3.0.0",
-            "PyYAML==6.0",
+            "cython==0.29.37",
+            "PyYAML==5.4.1",
             "oyaml==1.0",
             "pytest==7.1.1",
             "pytest-mock==3.7.0",
diff --git a/setup_environment.sh b/setup_environment.sh
index 9f8d09ea..253546d8 100755
--- a/setup_environment.sh
+++ b/setup_environment.sh
@@ -5,14 +5,8 @@ cd "$(dirname "$0")"  # Set working directory
 
 echo "Cleaning up any existing virtual environment..."
 rm -rf ./venv
-echo "Creating new virtual environment..."
-python3 -m virtualenv ./venv
 echo "Installing required packages..."
-./venv/bin/pip install setuptools wheel twine
-CONDA_BASE=$(conda info --base)
-source "${CONDA_BASE}/etc/profile.d/conda.sh"
-conda config --set verbosity 3 --env
-conda env update --prune --file environment.yml 
 conda activate coast
+conda install conda-forge::setuptools conda-forge::wheel conda-forge::twine
 
-echo "Done!"
+echo "Done!"
\ No newline at end of file

From e82e6836aef490582315f92e7b68bf0ec83704b2 Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Tue, 24 Jun 2025 18:12:44 +0100
Subject: [PATCH 14/20] Update setup_environment.sh

Update script to intialise conda in a shell session
---
 setup_environment.sh | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/setup_environment.sh b/setup_environment.sh
index 253546d8..6401915d 100755
--- a/setup_environment.sh
+++ b/setup_environment.sh
@@ -6,6 +6,8 @@ cd "$(dirname "$0")"  # Set working directory
 echo "Cleaning up any existing virtual environment..."
 rm -rf ./venv
 echo "Installing required packages..."
+CONDA_BASE=$(conda info --base)
+source "${CONDA_BASE}/etc/profile.d/conda.sh"
 conda activate coast
 conda install conda-forge::setuptools conda-forge::wheel conda-forge::twine
 

From 5c0428501525d0f1f866bd12052673dd886dfb5f Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Tue, 24 Jun 2025 18:17:51 +0100
Subject: [PATCH 15/20] Update build.sh and generate_conda_meta.sh

Update scripts to initialise conda in shell session
---
 build.sh               | 2 ++
 generate_conda_meta.sh | 2 ++
 2 files changed, 4 insertions(+)

diff --git a/build.sh b/build.sh
index 2f918362..cb1150a9 100755
--- a/build.sh
+++ b/build.sh
@@ -7,6 +7,8 @@ mkdir -p build dist
 echo "Cleaning up old versions..."
 rm -rf ./build/* ./dist/* ./Example_Python_Package.egg-info
 echo "Building package for distribution..."
+CONDA_BASE=$(conda info --base)
+source "${CONDA_BASE}/etc/profile.d/conda.sh"
 conda activate coast
 python ./setup.py sdist bdist_wheel
 
diff --git a/generate_conda_meta.sh b/generate_conda_meta.sh
index 1d35e4e0..8c2eb57b 100644
--- a/generate_conda_meta.sh
+++ b/generate_conda_meta.sh
@@ -1,3 +1,5 @@
 #!/bin/bash
+CONDA_BASE=$(conda info --base)
+source "${CONDA_BASE}/etc/profile.d/conda.sh"
 conda activate coast
 python setup.py conda

From 4c36ca7069853408123aaca5b64b828b2c644df1 Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Tue, 24 Jun 2025 19:37:01 +0100
Subject: [PATCH 16/20] Update pyproject.toml and setup_environment.sh

Add setuptools, wheel, twine and Cython dependencies to pyproject.toml file to be installed in a temporary build environment before setup.py is executed for sdist or bdis_wheel. Also, remove conda command that installs setuptools, wheel and twine dependencies from setup_environment.sh
---
 pyproject.toml       | 5 ++++-
 setup_environment.sh | 1 -
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index 43ad8d63..d7d22100 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,3 +1,6 @@
+[build-system]
+requires = ["setuptools", "wheel", "twine", "Cython"]
+build-backend = "setuptools.build_meta"
 [tool.black]
 line-length = 120
-target-version = ['py38', 'py39', 'py310']
+target-version = ['py38', 'py39', 'py310']
\ No newline at end of file
diff --git a/setup_environment.sh b/setup_environment.sh
index 6401915d..23bb0187 100755
--- a/setup_environment.sh
+++ b/setup_environment.sh
@@ -9,6 +9,5 @@ echo "Installing required packages..."
 CONDA_BASE=$(conda info --base)
 source "${CONDA_BASE}/etc/profile.d/conda.sh"
 conda activate coast
-conda install conda-forge::setuptools conda-forge::wheel conda-forge::twine
 
 echo "Done!"
\ No newline at end of file

From 81c7644df72e500371d4707db45a88ca5910829f Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Wed, 25 Jun 2025 09:01:59 +0100
Subject: [PATCH 17/20] Update pyproject.toml and setup_environment.sh

Remove build-system section from pyproject.tml file. Add conda command to install cython, setuptools, wheel and twine dependencies to setup_environment.sh
---
 pyproject.toml       | 3 ---
 setup_environment.sh | 1 +
 2 files changed, 1 insertion(+), 3 deletions(-)

diff --git a/pyproject.toml b/pyproject.toml
index d7d22100..facd982b 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,3 @@
-[build-system]
-requires = ["setuptools", "wheel", "twine", "Cython"]
-build-backend = "setuptools.build_meta"
 [tool.black]
 line-length = 120
 target-version = ['py38', 'py39', 'py310']
\ No newline at end of file
diff --git a/setup_environment.sh b/setup_environment.sh
index 23bb0187..d19c60bb 100755
--- a/setup_environment.sh
+++ b/setup_environment.sh
@@ -9,5 +9,6 @@ echo "Installing required packages..."
 CONDA_BASE=$(conda info --base)
 source "${CONDA_BASE}/etc/profile.d/conda.sh"
 conda activate coast
+conda install -c conda-forge cython setuptools wheel twine
 
 echo "Done!"
\ No newline at end of file

From 4c446d9c80557b7bde9e4a4e44a2013831d98622 Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Wed, 25 Jun 2025 09:15:47 +0100
Subject: [PATCH 18/20] Update build_package.yml

Add conda command to activate environment before installing COAsT package
---
 .github/workflows/build_package.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.github/workflows/build_package.yml b/.github/workflows/build_package.yml
index 00a569bd..4402e3a7 100644
--- a/.github/workflows/build_package.yml
+++ b/.github/workflows/build_package.yml
@@ -36,6 +36,9 @@ jobs:
           ./build.sh
       - name: Test Package Install
         run: |
+          CONDA_BASE=$(conda info --base)
+          source "${CONDA_BASE}/etc/profile.d/conda.sh"
+          conda activate coast
           python -m pip install dist/coast-*.tar.gz
       - name: Generate Conda Metadata
         run: |

From 98fceafa7207c87574da9a04a8fdb3de5c2ec637 Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Wed, 25 Jun 2025 10:29:56 +0100
Subject: [PATCH 19/20] Update unit_test_contents.yml

Swap pip-install command for conda commands to install dependencies
---
 .github/workflows/unit_test_contents.yml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/unit_test_contents.yml b/.github/workflows/unit_test_contents.yml
index 1c5d830d..ae61752e 100644
--- a/.github/workflows/unit_test_contents.yml
+++ b/.github/workflows/unit_test_contents.yml
@@ -17,7 +17,10 @@ jobs:
           python-version: ${{ matrix.python-version }}
       - name: Generate contents.
         run: |
-          pip install . 
+          CONDA_BASE=$(conda info --base)
+          source "${CONDA_BASE}/etc/profile.d/conda.sh"
+          conda env update --prune --file environment.yml 
+          conda activate coast 
           mkdir -p example_files
           sudo apt-get update
           sudo apt-get install -y libgeos-dev

From 410ab3d069f1208f45e60274ded50ebd0f968a9e Mon Sep 17 00:00:00 2001
From: Magda Juarez <magjua@noc.ac.uk>
Date: Wed, 25 Jun 2025 10:39:32 +0100
Subject: [PATCH 20/20] Update unit_test_contents.yml

Add pip command to install COAsT package
---
 .github/workflows/unit_test_contents.yml | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/unit_test_contents.yml b/.github/workflows/unit_test_contents.yml
index ae61752e..91829a35 100644
--- a/.github/workflows/unit_test_contents.yml
+++ b/.github/workflows/unit_test_contents.yml
@@ -19,8 +19,9 @@ jobs:
         run: |
           CONDA_BASE=$(conda info --base)
           source "${CONDA_BASE}/etc/profile.d/conda.sh"
-          conda env update --prune --file environment.yml 
-          conda activate coast 
+          conda env update --prune --file environment.yml
+          conda activate coast
+          pip install .
           mkdir -p example_files
           sudo apt-get update
           sudo apt-get install -y libgeos-dev