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Cellprofiler analyst developer's version installation for pc

alisonkozol edited this page Nov 3, 2015 · 19 revisions

A number of CPA's dependencies require CellProfiler to be installed first.

Follow the instructions from here on obtaining CellProfiler from our repository, installing Java, the Microsoft compilers, and Python and the associated libraries.

In addition to the dependenices listed above, you will also need:

pip install sklearn

pip install verlib

pip install javabridge

pip install python-bioformats

Now you can clone the CPA repository and double-click CellProfiler-Analyst.py to start CPA.

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