Added Shebang

Signed-off-by: Lehmann_Fabian <fabian.lehmann@informatik.hu-berlin.de>

Author: Lehmann-Fabian

execution/runExperiments.sh

@@ -1,4 +1,4 @@
-
+#!/bin/bash
 workflows=( rnaseq atacseq chipseq ampliseq mag viralrecon nanoseq sarek eager )
 prios=( fifo rank random max min rank_max rank_min )
 assigns=( random roundrobin fair )

inputs/ampliseq/fetchData.sh

@@ -1,3 +1,4 @@
+#!/bin/bash
 mkdir data
 cd data
 wget -q https://github.com/nf-core/test-datasets/raw/ampliseq/testdata/1a_S103_L001_R1_001.fastq.gz	

inputs/atacseq/fetchData.sh

@@ -1,3 +1,4 @@
+#!/bin/bash
 mkdir data
 cd data
 wget -q https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_1.fastq.gz

inputs/chipseq/fetchData.sh

@@ -1,3 +1,4 @@
+#!/bin/bash
 mkdir data
 cd data
 wget -q https://raw.githubusercontent.com/nf-core/test-datasets/atacseq/testdata/SRR1822153_1.fastq.gz

inputs/eager/fetchData.sh

@@ -1,3 +1,4 @@
+#!/bin/bash
 mkdir data
 cd data
 wget -q https://github.com/nf-core/test-datasets/raw/eager/testdata/Mammoth/fastq/JK2782_TGGCCGATCAACGA_L007_R1_001.fastq.gz.tengrand.fq.gz

inputs/mag/fetchData.sh

@@ -1,3 +1,4 @@
+#!/bin/bash
 mkdir data
 cd data
 wget -q https://github.com/nf-core/test-datasets/raw/mag/test_data/test_minigut_R1.fastq.gz

inputs/nanoseq/fetchData.sh

@@ -1,3 +1,4 @@
+#!/bin/bash
 mkdir data
 cd data
 cd ..

inputs/rnaseq/fetchData.sh

@@ -1,3 +1,4 @@
+#!/bin/bash
 mkdir data
 cd data
 wget -q "https://github.com/nf-core/test-datasets/raw/rnaseq/testdata/GSE110004/SRR6357070_1.fastq.gz"

inputs/sarek/fetchData.sh

@@ -1,3 +1,4 @@
+#!/bin/bash
 mkdir data
 cd data
 wget -q https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/homo_sapiens/illumina/fastq/test_1.fastq.gz

inputs/viralrecon/fetchData.sh

@@ -1,3 +1,4 @@
+#!/bin/bash
 mkdir data
 cd data
 wget -q https://raw.githubusercontent.com/nf-core/test-datasets/viralrecon/illumina/amplicon/sample1_R1.fastq.gz

setup.sh

@@ -1,6 +1,6 @@
+#!/bin/bash
 namespace="cws"
 
-
 kubectl create namespace $namespace
 kubectl apply -f setup/pvc.yaml --namespace $namespace
 kubectl apply -f setup/management.yaml --namespace $namespace

setup/commands.sh

@@ -1,3 +1,4 @@
+#!/bin/bash
 apt update > /dev/null
 apt install -y git wget unzip  > /dev/nulldata
 mkdir /input/pipelines