Installation problem - CUDA > 9.0

[sivlab]

My situation:
-Ubuntu 18.04
-nvidia-driver-410 (video driver)
-GeForce 940M (graphic card)
-CUDA 10.1 installed from the *.run

When I ran the following command:
R CMD INSTALL --configure-args="--with-cuda-home=$CUDA_HOME --with-boost-home=/usr" Rgtsvm
The following errors occur:

* installing to library ‘/home/sivlab/R/x86_64-pc-linux-gnu-library/3.5’
* installing *source* package ‘Rgtsvm’ ...
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
setting CUDA home directory to /usr/local/cuda
checking for /usr/local/cuda/bin/nvcc... yes
checking for CUDA headers... checking for /usr/local/cuda/include/cublas.h... yes
checking whether this is a 64-bit version of CUDA... checking for /usr/local/cuda/lib64/libcublas.so... no
setting BOOST home directory to /usr
checking for BOOST headers... checking for /usr/include/boost/version.hpp... yes
setting R home directory to /usr/lib/R
checking for R... yes
setting R header files to /usr/share/R/include
configure: creating ./config.status
config.status: creating src/Makefile
** libs
** arch - 
g++ -O2 -funroll-loops -fomit-frame-pointer -ffast-math -I/usr/local/cuda/include -I/usr/include -I/usr/share/R/include -Wall -fPIC -D_GNU_SOURCE -m32 headers.hpp
g++ -O2 -funroll-loops -fomit-frame-pointer -ffast-math -I/usr/local/cuda/include -I/usr/include -I/usr/share/R/include -Wall -fPIC -D_GNU_SOURCE -m32 -c Rgtsvm.cpp -o Rgtsvm.o
g++ -O2 -funroll-loops -fomit-frame-pointer -ffast-math -I/usr/local/cuda/include -I/usr/include -I/usr/share/R/include -Wall -fPIC -D_GNU_SOURCE -m32 -c Rgtsvm2.cpp -o Rgtsvm2.o
g++ -O2 -funroll-loops -fomit-frame-pointer -ffast-math -I/usr/local/cuda/include -I/usr/include -I/usr/share/R/include -Wall -fPIC -D_GNU_SOURCE -m32 -c svmlight.cpp -o svmlight.o
svmlight.cpp: In function ‘SEXPREC* get_svmlight(SEXP)’:
svmlight.cpp:152:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     while( offset < file.gcount() )
            ~~~~~~~^~~~~~~~~~~~~~~
svmlight.cpp:158:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
          if (offset < file.gcount())
              ~~~~~~~^~~~~~~~~~~~~~~
g++ -O2 -funroll-loops -fomit-frame-pointer -ffast-math -I/usr/local/cuda/include -I/usr/include -I/usr/share/R/include -Wall -fPIC -D_GNU_SOURCE -m32 -c svm.cpp -o svm.o
g++ -O2 -funroll-loops -fomit-frame-pointer -ffast-math -I/usr/local/cuda/include -I/usr/include -I/usr/share/R/include -Wall -fPIC -D_GNU_SOURCE -m32 -c cuda_exception.cpp -o cuda_exception.o
g++ -O2 -funroll-loops -fomit-frame-pointer -ffast-math -I/usr/local/cuda/include -I/usr/include -I/usr/share/R/include -Wall -fPIC -D_GNU_SOURCE -m32 -c Rgtsvm_RI.cpp -o Rgtsvm_RI.o
/usr/local/cuda/bin/nvcc -arch=sm_50 -O2 -I/usr/local/cuda/include -I/usr/include -DBOOST_NOINLINE='__attribute__((noinline))' -Xcompiler "-O2 -fpic -I/usr/share/R/include" -c cuda_sparse_kernel.cu -o cuda_sparse_kernel.o
/usr/local/cuda/bin/nvcc -arch=sm_50 -O2 -I/usr/local/cuda/include -I/usr/include -DBOOST_NOINLINE='__attribute__((noinline))' -Xcompiler "-O2 -fpic -I/usr/share/R/include" -c cuda_reduce.cu -o cuda_reduce.o
/usr/local/cuda/bin/nvcc -arch=sm_50 -O2 -I/usr/local/cuda/include -I/usr/include -DBOOST_NOINLINE='__attribute__((noinline))' -Xcompiler "-O2 -fpic -I/usr/share/R/include" -c cuda_find_largest.cu -o cuda_find_largest.o
/usr/local/cuda/bin/nvcc -arch=sm_50 -O2 -I/usr/local/cuda/include -I/usr/include -DBOOST_NOINLINE='__attribute__((noinline))' -Xcompiler "-O2 -fpic -I/usr/share/R/include" -c cuda_partial_sum.cu -o cuda_partial_sum.o
/usr/local/cuda/bin/nvcc -arch=sm_50 -O2 -I/usr/local/cuda/include -I/usr/include -DBOOST_NOINLINE='__attribute__((noinline))' -Xcompiler "-O2 -fpic -I/usr/share/R/include" -c cuda_array.cu -o cuda_array.o
/usr/local/cuda/bin/nvcc -shared -L/usr/local/cuda/lib -lcuda Rgtsvm.o Rgtsvm2.o svmlight.o svm.o cuda_exception.o Rgtsvm_RI.o cuda_sparse_kernel.o cuda_reduce.o cuda_find_largest.o cuda_partial_sum.o cuda_array.o -o Rgtsvm.so 
/usr/bin/ld: i386 architecture of input file `Rgtsvm.o' is incompatible with i386:x86-64 output
/usr/bin/ld: i386 architecture of input file `Rgtsvm2.o' is incompatible with i386:x86-64 output
/usr/bin/ld: i386 architecture of input file `svmlight.o' is incompatible with i386:x86-64 output
/usr/bin/ld: i386 architecture of input file `svm.o' is incompatible with i386:x86-64 output
/usr/bin/ld: i386 architecture of input file `cuda_exception.o' is incompatible with i386:x86-64 output
/usr/bin/ld: i386 architecture of input file `Rgtsvm_RI.o' is incompatible with i386:x86-64 output
svm.o: In function `void std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct<char const*>(char const*, char const*, std::forward_iterator_tag) [clone .isra.117]':
svm.cpp:(.text.unlikely+0x218): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned int&, unsigned int)'
Rgtsvm.o: In function `run_script(char*)':
Rgtsvm.cpp:(.text+0x14): undefined reference to `R_NilValue'
Rgtsvm.cpp:(.text+0x33): undefined reference to `Rf_allocVector'
Rgtsvm.cpp:(.text+0x3d): undefined reference to `Rf_protect'
Rgtsvm.cpp:(.text+0x45): undefined reference to `Rf_mkChar'
Rgtsvm.cpp:(.text+0x51): undefined reference to `SET_STRING_ELT'
Rgtsvm.cpp:(.text+0x67): undefined reference to `R_ParseVector'
Rgtsvm.cpp:(.text+0x6f): undefined reference to `Rf_protect'
Rgtsvm.cpp:(.text+0x7f): undefined reference to `R_GlobalEnv'
Rgtsvm.cpp:(.text+0xa0): undefined reference to `VECTOR_ELT'
Rgtsvm.cpp:(.text+0xa9): undefined reference to `Rf_eval'
Rgtsvm.cpp:(.text+0xb7): undefined reference to `Rf_length'
Rgtsvm.cpp:(.text+0xc8): undefined reference to `Rf_unprotect'
Rgtsvm.cpp:(.text+0xec): undefined reference to `Rf_unprotect'
Rgtsvm.cpp:(.text+0xfb): undefined reference to `Rf_error'
Rgtsvm.o: In function `gtsvmtrain_epsregression_C':
Rgtsvm.cpp:(.text+0x31b): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x32d): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x384): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x396): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x3d8): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x3ea): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x7eb): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x7f9): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0xbfe): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0xc0c): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0xf1d): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0xf60): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0xfec): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x10e1): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x132f): undefined reference to `Rprintf'
Rgtsvm.o:Rgtsvm.cpp:(.text+0x15f9): more undefined references to `Rprintf' follow
Rgtsvm.o: In function `gtsvmpredict_epsregression_C':
Rgtsvm.cpp:(.text+0x1bd6): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x1be8): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x1c51): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x1c5f): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x1cb8): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x1ccc): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x1ef2): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x1f00): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x2194): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x2269): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x24c6): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x272a): undefined reference to `Rprintf'
Rgtsvm.o: In function `gtsvmtrain_classfication_C':
Rgtsvm.cpp:(.text+0x2a34): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x2a46): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x2b35): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x2b49): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x2f5c): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x2f6e): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x3515): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x3529): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x388b): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x3a35): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x3abd): undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)'
Rgtsvm.cpp:(.text+0x3b1c): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x3f65): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x4041): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x44fc): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x483e): undefined reference to `Rprintf'
Rgtsvm.o: In function `gtsvmpredict_classfication_C':
Rgtsvm.cpp:(.text+0x4c19): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x4c27): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x4d1d): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x4d35): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x4f5c): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x4f6a): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x598e): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x59d4): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x59f1): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x5cef): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x5f69): undefined reference to `Rprintf'
Rgtsvm.o: In function `gtsvmpredict_classfication_batch':
Rgtsvm.cpp:(.text+0x6204): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x6216): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x6305): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x6317): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x653a): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x6627): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x664e): undefined reference to `R_DimSymbol'
Rgtsvm.cpp:(.text+0x6656): undefined reference to `Rf_getAttrib'
Rgtsvm.cpp:(.text+0x6666): undefined reference to `Rf_length'
Rgtsvm.cpp:(.text+0x6681): undefined reference to `Rf_length'
Rgtsvm.cpp:(.text+0x6696): undefined reference to `INTEGER'
Rgtsvm.cpp:(.text+0x66ce): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x66dc): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x6726): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x6738): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x6799): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x67ad): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x6968): undefined reference to `REAL'
Rgtsvm.cpp:(.text+0x6e13): undefined reference to `INTEGER'
Rgtsvm.cpp:(.text+0x6e29): undefined reference to `INTEGER'
Rgtsvm.cpp:(.text+0x708a): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x71c6): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x7476): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x7484): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x78f7): undefined reference to `Rprintf'
Rgtsvm.o: In function `gtsvmpredict_epsregression_batch':
Rgtsvm.cpp:(.text+0x7eee): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x7f01): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x7f13): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x7f7a): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x7f88): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x7fdf): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x7ff3): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x81d6): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x82f5): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x831b): undefined reference to `R_DimSymbol'
Rgtsvm.cpp:(.text+0x8324): undefined reference to `Rf_getAttrib'
Rgtsvm.cpp:(.text+0x8334): undefined reference to `Rf_length'
Rgtsvm.cpp:(.text+0x834f): undefined reference to `Rf_length'
Rgtsvm.cpp:(.text+0x836a): undefined reference to `INTEGER'
Rgtsvm.cpp:(.text+0x8393): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x83a5): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x83e6): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x83f4): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x843e): undefined reference to `operator new[](unsigned int)'
Rgtsvm.cpp:(.text+0x8452): undefined reference to `operator new(unsigned int)'
Rgtsvm.cpp:(.text+0x85da): undefined reference to `REAL'
Rgtsvm.cpp:(.text+0x8813): undefined reference to `INTEGER'
Rgtsvm.cpp:(.text+0x8829): undefined reference to `INTEGER'
Rgtsvm.cpp:(.text+0x8a11): undefined reference to `Rprintf'
Rgtsvm.cpp:(.text+0x8c0e): undefined reference to `Rprintf'
Rgtsvm.o: In function `boost::detail::sp_counted_impl_pd<unsigned int*, boost::checked_array_deleter<unsigned int> >::~sp_counted_impl_pd()':
Rgtsvm.cpp:(.text._ZN5boost6detail18sp_counted_impl_pdIPjNS_21checked_array_deleterIjEEED0Ev[_ZN5boost6detail18sp_counted_impl_pdIPjNS_21checked_array_deleterIjEEED5Ev]+0x16): undefined reference to `operator delete(void*, unsigned int)'
Rgtsvm.o: In function `boost::detail::sp_counted_impl_pd<double*, boost::checked_array_deleter<double> >::~sp_counted_impl_pd()':
Rgtsvm.cpp:(.text._ZN5boost6detail18sp_counted_impl_pdIPdNS_21checked_array_deleterIdEEED0Ev[_ZN5boost6detail18sp_counted_impl_pdIPdNS_21checked_array_deleterIdEEED5Ev]+0x16): undefined reference to `operator delete(void*, unsigned int)'
Rgtsvm.o: In function `boost::detail::sp_counted_impl_pd<float*, boost::checked_array_deleter<float> >::~sp_counted_impl_pd()':
Rgtsvm.cpp:(.text._ZN5boost6detail18sp_counted_impl_pdIPfNS_21checked_array_deleterIfEEED0Ev[_ZN5boost6detail18sp_counted_impl_pdIPfNS_21checked_array_deleterIfEEED5Ev]+0x16): undefined reference to `operator delete(void*, unsigned int)'
Rgtsvm2.o: In function `gtsvmpredict_epsregression_loadsvm':
Rgtsvm2.cpp:(.text+0xa5): undefined reference to `operator new(unsigned int)'
Rgtsvm2.cpp:(.text+0x13b): undefined reference to `Rprintf'
Rgtsvm2.cpp:(.text+0x14b): undefined reference to `operator new[](unsigned int)'
Rgtsvm2.cpp:(.text+0x15a): undefined reference to `operator new(unsigned int)'
Rgtsvm2.cpp:(.text+0x1b2): undefined reference to `operator new[](unsigned int)'
Rgtsvm2.cpp:(.text+0x1c0): undefined reference to `operator new(unsigned int)'
Rgtsvm2.cpp:(.text+0x205): undefined reference to `operator new[](unsigned int)'
Rgtsvm2.cpp:(.text+0x216): undefined reference to `operator new(unsigned int)'
Rgtsvm2.cpp:(.text+0x455): undefined reference to `Rprintf'
Rgtsvm2.cpp:(.text+0x662): undefined reference to `Rprintf'
Rgtsvm2.cpp:(.text+0x716): undefined reference to `operator delete(void*, unsigned int)'
Rgtsvm2.o: In function `gtsvmpredict_epsregression_direct_C':
Rgtsvm2.cpp:(.text+0x8d3): undefined reference to `operator new[](unsigned int)'
Rgtsvm2.cpp:(.text+0x8e4): undefined reference to `operator new(unsigned int)'
Rgtsvm2.cpp:(.text+0xaf8): undefined reference to `Rprintf'
Rgtsvm2.cpp:(.text+0xb16): undefined reference to `Rprintf'
Rgtsvm2.cpp:(.text+0xc62): undefined reference to `Rprintf'
Rgtsvm2.o: In function `gtsvmpredict_classfication_loadsvm':
Rgtsvm2.cpp:(.text+0xddb): undefined reference to `operator new(unsigned int)'
Rgtsvm2.cpp:(.text+0xe69): undefined reference to `operator new[](unsigned int)'
Rgtsvm2.cpp:(.text+0xe78): undefined reference to `operator new(unsigned int)'
Rgtsvm2.cpp:(.text+0xf5c): undefined reference to `operator new[](unsigned int)'
Rgtsvm2.cpp:(.text+0xf6b): undefined reference to `operator new(unsigned int)'
Rgtsvm2.cpp:(.text+0x117f): undefined reference to `Rprintf'
Rgtsvm2.cpp:(.text+0x120d): undefined reference to `Rprintf'
Rgtsvm2.cpp:(.text+0x1331): undefined reference to `Rprintf'
Rgtsvm2.cpp:(.text+0x13e7): undefined reference to `operator delete(void*, unsigned int)'
Rgtsvm2.o: In function `gtsvmpredict_classfication_direct_C':
Rgtsvm2.cpp:(.text+0x158e): undefined reference to `Rprintf'
Rgtsvm2.cpp:(.text+0x15cf): undefined reference to `operator new[](unsigned int)'
Rgtsvm2.cpp:(.text+0x15e0): undefined reference to `operator new(unsigned int)'
Rgtsvm2.cpp:(.text+0x1d7e): undefined reference to `Rprintf'
Rgtsvm2.cpp:(.text+0x1f62): undefined reference to `Rprintf'
Rgtsvm2.o: In function `gtsvmpredict_unloadsvm_C':
Rgtsvm2.cpp:(.text+0x2136): undefined reference to `operator delete(void*, unsigned int)'
svmlight.o: In function `get_svmlight':
svmlight.cpp:(.text+0x30): undefined reference to `STRING_ELT'
svmlight.cpp:(.text+0x38): undefined reference to `R_CHAR'
svmlight.cpp:(.text+0x18b): undefined reference to `Rprintf'
svmlight.cpp:(.text+0x191): undefined reference to `R_NilValue'
svmlight.cpp:(.text+0x27e): undefined reference to `std::istream::seekg(long long, std::_Ios_Seekdir)'
svmlight.cpp:(.text+0x2cb): undefined reference to `R_chk_calloc'
svmlight.cpp:(.text+0x2e1): undefined reference to `R_chk_calloc'
svmlight.cpp:(.text+0x2f7): undefined reference to `R_chk_calloc'
svmlight.cpp:(.text+0x30d): undefined reference to `R_chk_calloc'
svmlight.cpp:(.text+0x323): undefined reference to `R_chk_calloc'
svmlight.cpp:(.text+0x335): undefined reference to `operator new[](unsigned int)'
svmlight.cpp:(.text+0x347): undefined reference to `operator new(unsigned int)'
svmlight.cpp:(.text+0x385): undefined reference to `std::istream::seekg(long long, std::_Ios_Seekdir)'
svmlight.cpp:(.text+0x41c): undefined reference to `std::istream::read(char*, int)'
svmlight.cpp:(.text+0x763): undefined reference to `R_chk_calloc'
svmlight.cpp:(.text+0x796): undefined reference to `R_chk_free'
svmlight.cpp:(.text+0x855): undefined reference to `R_chk_calloc'
svmlight.cpp:(.text+0x88e): undefined reference to `R_chk_free'
svmlight.cpp:(.text+0x953): undefined reference to `R_chk_calloc'
svmlight.cpp:(.text+0x986): undefined reference to `R_chk_free'
svmlight.cpp:(.text+0xa71): undefined reference to `R_chk_calloc'
svmlight.cpp:(.text+0xaa4): undefined reference to `R_chk_free'
svmlight.cpp:(.text+0xad7): undefined reference to `std::istream::seekg(long long, std::_Ios_Seekdir)'
svmlight.cpp:(.text+0xb23): undefined reference to `Rf_allocMatrix'
svmlight.cpp:(.text+0xb2b): undefined reference to `Rf_protect'
svmlight.cpp:(.text+0xb3f): undefined reference to `REAL'
svmlight.cpp:(.text+0x1175): undefined reference to `Rf_unprotect'
svmlight.cpp:(.text+0x119d): undefined reference to `R_chk_free'
svmlight.cpp:(.text+0x11a9): undefined reference to `R_chk_free'
svmlight.cpp:(.text+0x11b5): undefined reference to `R_chk_free'
svmlight.cpp:(.text+0x11c1): undefined reference to `R_chk_free'
svmlight.cpp:(.text+0x11cd): undefined reference to `R_chk_free'
svmlight.cpp:(.text+0x121b): undefined reference to `R_chk_calloc'
svmlight.cpp:(.text+0x1229): undefined reference to `R_chk_free'
svmlight.cpp:(.text+0x1370): undefined reference to `R_chk_free'
svmlight.cpp:(.text+0x13a5): undefined reference to `R_chk_free'
svmlight.cpp:(.text+0x13e0): undefined reference to `R_chk_free'
svmlight.cpp:(.text+0x13f7): undefined reference to `R_chk_free'
svmlight.o:svmlight.cpp:(.text+0x140e): more undefined references to `R_chk_free' follow
svmlight.o: In function `boost::detail::sp_counted_impl_pd<char*, boost::checked_array_deleter<char> >::~sp_counted_impl_pd()':
svmlight.cpp:(.text._ZN5boost6detail18sp_counted_impl_pdIPcNS_21checked_array_deleterIcEEED0Ev[_ZN5boost6detail18sp_counted_impl_pdIPcNS_21checked_array_deleterIcEEED5Ev]+0x16): undefined reference to `operator delete(void*, unsigned int)'
svmlight.o: In function `optimVector::~optimVector()':
svmlight.cpp:(.text._ZN11optimVectorD2Ev[_ZN11optimVectorD5Ev]+0x22): undefined reference to `R_chk_free'
svmlight.o: In function `optimVector::~optimVector()':
svmlight.cpp:(.text._ZN11optimVectorD0Ev[_ZN11optimVectorD5Ev]+0x23): undefined reference to `R_chk_free'
svmlight.cpp:(.text._ZN11optimVectorD0Ev[_ZN11optimVectorD5Ev]+0x2d): undefined reference to `operator delete(void*, unsigned int)'
svm.o: In function `boost::detail::shared_count::shared_count<unsigned int*, boost::checked_array_deleter<unsigned int> >(unsigned int*, boost::checked_array_deleter<unsigned int>) [clone .constprop.219]':
svm.cpp:(.text+0x9a24): undefined reference to `operator new(unsigned int)'
svm.o: In function `GTSVM::SVM::Restart(float, float const*, unsigned int, GTSVM_Kernel, float, float, float, bool)':
svm.cpp:(.text+0x120c7): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x120d6): undefined reference to `operator new(unsigned int)'
svm.o: In function `GTSVM::SVM::ClassifyDense(void*, GTSVM_Type, void const*, GTSVM_Type, unsigned int, unsigned int, unsigned int, unsigned int, unsigned int*, unsigned int*, bool)':
svm.cpp:(.text+0x19a5e): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x19a6f): undefined reference to `operator new(unsigned int)'
svm.o: In function `GTSVM::SVM::SVM()':
svm.cpp:(.text+0x250db): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x250ea): undefined reference to `operator new(unsigned int)'
svm.o: In function `GTSVM::SVM::ClusterTrainingVectors(bool, unsigned int)':
svm.cpp:(.text+0x25a1a): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x25bdc): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x25c26): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x25d78): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x25dca): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x25ddb): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x25f26): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x25f37): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x25f7a): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x25f8c): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x267ad): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x26a22): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x26cfe): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x26e80): undefined reference to `operator new(unsigned int)'
svm.o:svm.cpp:(.text+0x270e2): more undefined references to `operator new(unsigned int)' follow
svm.o: In function `GTSVM::SVM::ClusterTrainingVectors(bool, unsigned int)':
svm.cpp:(.text+0x275b8): undefined reference to `operator delete[](void*, unsigned int)'
svm.o: In function `GTSVM::SVM::InitializeDense(void const*, GTSVM_Type, unsigned int, unsigned int, unsigned int, unsigned int, unsigned int*, unsigned int*, void const*, GTSVM_Type, void const*, GTSVM_Type, bool, bool, float, float const*, unsigned int, GTSVM_Kernel, float, float, float, bool, bool, unsigned int, bool)':
svm.cpp:(.text+0x27788): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x2794b): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x279b4): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x279c2): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x27af0): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x27ef0): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x282f1): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x28730): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x28b30): undefined reference to `operator new[](unsigned int)'
svm.o:svm.cpp:(.text+0x28f08): more undefined references to `operator new[](unsigned int)' follow
svm.o: In function `GTSVM::SVM::InitializeDense(void const*, GTSVM_Type, unsigned int, unsigned int, unsigned int, unsigned int, unsigned int*, unsigned int*, void const*, GTSVM_Type, void const*, GTSVM_Type, bool, bool, float, float const*, unsigned int, GTSVM_Kernel, float, float, float, bool, bool, unsigned int, bool)':
svm.cpp:(.text+0x2bdec): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x2c0b9): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x2c0c7): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x2c682): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x2c690): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x2c6f3): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x2c701): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x2c767): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x2c775): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x2c7e1): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x2c7ef): undefined reference to `operator new(unsigned int)'
svm.o: In function `GTSVM::SVM::Load(char const*, bool, unsigned int)':
svm.cpp:(.text+0x2eb51): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x2ed22): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x2ee7e): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x2ee8f): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x2ef14): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x2ef90): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x2f00f): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x2f08e): undefined reference to `operator new[](unsigned int)'
svm.o: In function `GTSVM::SVM::ShrinkClassfication(bool, unsigned int)':
svm.cpp:(.text+0x3012f): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x302e8): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x30330): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x3033f): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x30370): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x3037f): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x303b0): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x303bf): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x30402): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x30411): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x3045d): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x3046c): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x30c79): undefined reference to `operator new[](unsigned int)'
svm.o: In function `GTSVM::SVM::ShrinkRegression(bool, unsigned int)':
svm.cpp:(.text+0x315bf): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x3177f): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x317c7): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x317d6): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x31803): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x31812): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x31841): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x31850): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x31892): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x318a1): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x318d2): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x318e1): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x31f79): undefined reference to `operator new[](unsigned int)'
svm.o: In function `.L21238':
svm.cpp:(.text+0x3268c): undefined reference to `operator new[](unsigned int)'
svm.o: In function `.L21242':
svm.cpp:(.text+0x32f5b): undefined reference to `operator new[](unsigned int)'
svm.o: In function `.L21246':
svm.cpp:(.text+0x33d7b): undefined reference to `operator new[](unsigned int)'
svm.o: In function `.L21248':
svm.cpp:(.text+0x34544): undefined reference to `operator new[](unsigned int)'
svm.o:svm.cpp:(.text+0x34e08): more undefined references to `operator new[](unsigned int)' follow
svm.o: In function `GTSVM::SVM::InitializeSparse(void const*, unsigned int const*, unsigned int const*, GTSVM_Type, void const*, GTSVM_Type, void const*, GTSVM_Type, unsigned int, unsigned int, bool, bool, float, float const*, unsigned int, GTSVM_Kernel, float, float, float, bool, bool, unsigned int, bool)':
svm.cpp:(.text+0x3f6f5): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x3f750): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x3f761): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x3f805): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x3f816): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x3facb): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x3fadc): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x3fd25): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x3fd36): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x3fd8b): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x3fd9c): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x3fdf6): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x3fe07): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x3fe69): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x3fe7a): undefined reference to `operator new(unsigned int)'
svm.o: In function `GTSVM::SVM::ClassifySparse(void*, GTSVM_Type, void const*, unsigned int const*, unsigned int const*, GTSVM_Type, unsigned int, unsigned int, bool)':
svm.cpp:(.text+0x40760): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x40939): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text+0x409ac): undefined reference to `operator new[](unsigned int)'
svm.cpp:(.text+0x409bb): undefined reference to `operator new(unsigned int)'
svm.o: In function `boost::detail::sp_counted_impl_pd<boost::shared_array<unsigned int>*, boost::checked_array_deleter<boost::shared_array<unsigned int> > >::~sp_counted_impl_pd()':
svm.cpp:(.text._ZN5boost6detail18sp_counted_impl_pdIPNS_12shared_arrayIjEENS_21checked_array_deleterIS3_EEED0Ev[_ZN5boost6detail18sp_counted_impl_pdIPNS_12shared_arrayIjEENS_21checked_array_deleterIS3_EEED5Ev]+0x16): undefined reference to `operator delete(void*, unsigned int)'
svm.o: In function `boost::detail::sp_counted_impl_pd<std::vector<unsigned int, std::allocator<unsigned int> >*, boost::checked_array_deleter<std::vector<unsigned int, std::allocator<unsigned int> > > >::~sp_counted_impl_pd()':
svm.cpp:(.text._ZN5boost6detail18sp_counted_impl_pdIPSt6vectorIjSaIjEENS_21checked_array_deleterIS4_EEED0Ev[_ZN5boost6detail18sp_counted_impl_pdIPSt6vectorIjSaIjEENS_21checked_array_deleterIS4_EEED5Ev]+0x16): undefined reference to `operator delete(void*, unsigned int)'
svm.o: In function `boost::detail::sp_counted_impl_pd<bool*, boost::checked_array_deleter<bool> >::~sp_counted_impl_pd()':
svm.cpp:(.text._ZN5boost6detail18sp_counted_impl_pdIPbNS_21checked_array_deleterIbEEED0Ev[_ZN5boost6detail18sp_counted_impl_pdIPbNS_21checked_array_deleterIbEEED5Ev]+0x16): undefined reference to `operator delete(void*, unsigned int)'
svm.o: In function `boost::detail::sp_counted_impl_pd<int*, boost::checked_array_deleter<int> >::~sp_counted_impl_pd()':
svm.cpp:(.text._ZN5boost6detail18sp_counted_impl_pdIPiNS_21checked_array_deleterIiEEED0Ev[_ZN5boost6detail18sp_counted_impl_pdIPiNS_21checked_array_deleterIiEEED5Ev]+0x16): undefined reference to `operator delete(void*, unsigned int)'
svm.o: In function `boost::detail::sp_counted_impl_pd<std::vector<std::pair<unsigned int, float>, std::allocator<std::pair<unsigned int, float> > >*, boost::checked_array_deleter<std::vector<std::pair<unsigned int, float>, std::allocator<std::pair<unsigned int, float> > > > >::~sp_counted_impl_pd()':
svm.cpp:(.text._ZN5boost6detail18sp_counted_impl_pdIPSt6vectorISt4pairIjfESaIS4_EENS_21checked_array_deleterIS6_EEED0Ev[_ZN5boost6detail18sp_counted_impl_pdIPSt6vectorISt4pairIjfESaIS4_EENS_21checked_array_deleterIS6_EEED5Ev]+0x16): undefined reference to `operator delete(void*, unsigned int)'
svm.o: In function `boost::detail::sp_counted_impl_pd<std::vector<unsigned int, std::allocator<unsigned int> >*, boost::checked_array_deleter<std::vector<unsigned int, std::allocator<unsigned int> > > >::dispose()':
svm.cpp:(.text._ZN5boost6detail18sp_counted_impl_pdIPSt6vectorIjSaIjEENS_21checked_array_deleterIS4_EEE7disposeEv[_ZN5boost6detail18sp_counted_impl_pdIPSt6vectorIjSaIjEENS_21checked_array_deleterIS4_EEE7disposeEv]+0x1ec): undefined reference to `operator delete[](void*, unsigned int)'
svm.o: In function `boost::detail::sp_counted_impl_pd<std::vector<std::pair<unsigned int, float>, std::allocator<std::pair<unsigned int, float> > >*, boost::checked_array_deleter<std::vector<std::pair<unsigned int, float>, std::allocator<std::pair<unsigned int, float> > > > >::dispose()':
svm.cpp:(.text._ZN5boost6detail18sp_counted_impl_pdIPSt6vectorISt4pairIjfESaIS4_EENS_21checked_array_deleterIS6_EEE7disposeEv[_ZN5boost6detail18sp_counted_impl_pdIPSt6vectorISt4pairIjfESaIS4_EENS_21checked_array_deleterIS6_EEE7disposeEv]+0x1ec): undefined reference to `operator delete[](void*, unsigned int)'
svm.o: In function `boost::detail::sp_counted_impl_pd<boost::shared_array<unsigned int>*, boost::checked_array_deleter<boost::shared_array<unsigned int> > >::dispose()':
svm.cpp:(.text._ZN5boost6detail18sp_counted_impl_pdIPNS_12shared_arrayIjEENS_21checked_array_deleterIS3_EEE7disposeEv[_ZN5boost6detail18sp_counted_impl_pdIPNS_12shared_arrayIjEENS_21checked_array_deleterIS3_EEE7disposeEv]+0xfe): undefined reference to `operator delete[](void*, unsigned int)'
svm.o: In function `GTSVM::CUDA::Exception::Exception(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, cudaError const&)':
svm.cpp:(.text._ZN5GTSVM4CUDA9ExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjS9_RK9cudaError[_ZN5GTSVM4CUDA9ExceptionC5ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjS9_RK9cudaError]+0x267): undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
svm.cpp:(.text._ZN5GTSVM4CUDA9ExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjS9_RK9cudaError[_ZN5GTSVM4CUDA9ExceptionC5ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjS9_RK9cudaError]+0x280): undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
svm.cpp:(.text._ZN5GTSVM4CUDA9ExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjS9_RK9cudaError[_ZN5GTSVM4CUDA9ExceptionC5ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjS9_RK9cudaError]+0x29f): undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
svm.cpp:(.text._ZN5GTSVM4CUDA9ExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjS9_RK9cudaError[_ZN5GTSVM4CUDA9ExceptionC5ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjS9_RK9cudaError]+0x2b3): undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
svm.cpp:(.text._ZN5GTSVM4CUDA9ExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjS9_RK9cudaError[_ZN5GTSVM4CUDA9ExceptionC5ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjS9_RK9cudaError]+0x2cb): undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
svm.o:svm.cpp:(.text._ZN5GTSVM4CUDA9ExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjS9_RK9cudaError[_ZN5GTSVM4CUDA9ExceptionC5ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjS9_RK9cudaError]+0x309): more undefined references to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)' follow
svm.o: In function `std::vector<std::pair<unsigned int, float>, std::allocator<std::pair<unsigned int, float> > >::operator=(std::vector<std::pair<unsigned int, float>, std::allocator<std::pair<unsigned int, float> > > const&)':
svm.cpp:(.text._ZNSt6vectorISt4pairIjfESaIS1_EEaSERKS3_[_ZNSt6vectorISt4pairIjfESaIS1_EEaSERKS3_]+0x1d6): undefined reference to `operator new(unsigned int)'
svm.o: In function `boost::detail::shared_count::shared_count<double*, boost::checked_array_deleter<double> >(double*, boost::checked_array_deleter<double>)':
svm.cpp:(.text._ZN5boost6detail12shared_countC2IPdNS_21checked_array_deleterIdEEEET_T0_[_ZN5boost6detail12shared_countC5IPdNS_21checked_array_deleterIdEEEET_T0_]+0x22): undefined reference to `operator new(unsigned int)'
svm.o: In function `boost::detail::shared_count::shared_count<float*, boost::checked_array_deleter<float> >(float*, boost::checked_array_deleter<float>)':
svm.cpp:(.text._ZN5boost6detail12shared_countC2IPfNS_21checked_array_deleterIfEEEET_T0_[_ZN5boost6detail12shared_countC5IPfNS_21checked_array_deleterIfEEEET_T0_]+0x22): undefined reference to `operator new(unsigned int)'
svm.o: In function `void std::vector<std::vector<unsigned int, std::allocator<unsigned int> >, std::allocator<std::vector<unsigned int, std::allocator<unsigned int> > > >::_M_realloc_insert<std::vector<unsigned int, std::allocator<unsigned int> > const&>(__gnu_cxx::__normal_iterator<std::vector<unsigned int, std::allocator<unsigned int> >*, std::vector<std::vector<unsigned int, std::allocator<unsigned int> >, std::allocator<std::vector<unsigned int, std::allocator<unsigned int> > > > >, std::vector<unsigned int, std::allocator<unsigned int> > const&)':
svm.cpp:(.text._ZNSt6vectorIS_IjSaIjEESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_[_ZNSt6vectorIS_IjSaIjEESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_]+0x5b): undefined reference to `operator new(unsigned int)'
svm.cpp:(.text._ZNSt6vectorIS_IjSaIjEESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_[_ZNSt6vectorIS_IjSaIjEESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_]+0xb2): undefined reference to `operator new(unsigned int)'
svm.o:svm.cpp:(.text._ZNSt6vectorISt4pairIjfESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_[_ZNSt6vectorISt4pairIjfESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_]+0x4e): more undefined references to `operator new(unsigned int)' follow
svm.o: In function `void boost::checked_array_delete<std::vector<std::pair<unsigned int, float>, std::allocator<std::pair<unsigned int, float> > > >(std::vector<std::pair<unsigned int, float>, std::allocator<std::pair<unsigned int, float> > >*)':
svm.cpp:(.text._ZN5boost20checked_array_deleteISt6vectorISt4pairIjfESaIS3_EEEEvPT_[_ZN5boost20checked_array_deleteISt6vectorISt4pairIjfESaIS3_EEEEvPT_]+0x1e9): undefined reference to `operator delete[](void*, unsigned int)'
svm.o: In function `void boost::checked_array_delete<boost::shared_array<unsigned int> >(boost::shared_array<unsigned int>*)':
svm.cpp:(.text._ZN5boost20checked_array_deleteINS_12shared_arrayIjEEEEvPT_[_ZN5boost20checked_array_deleteINS_12shared_arrayIjEEEEvPT_]+0xfb): undefined reference to `operator delete[](void*, unsigned int)'
svm.o: In function `void std::vector<std::pair<int, int>, std::allocator<std::pair<int, int> > >::_M_realloc_insert<std::pair<int, int> >(__gnu_cxx::__normal_iterator<std::pair<int, int>*, std::vector<std::pair<int, int>, std::allocator<std::pair<int, int> > > >, std::pair<int, int>&&)':
svm.cpp:(.text._ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_[_ZNSt6vectorISt4pairIiiESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_]+0x4e): undefined reference to `operator new(unsigned int)'
cuda_exception.o: In function `GTSVM::CUDA::Exception::~Exception()':
cuda_exception.cpp:(.text+0x80): undefined reference to `operator delete(void*, unsigned int)'
Rgtsvm_RI.o: In function `gtsvmtrain_epsregression':
Rgtsvm_RI.cpp:(.text+0x1d): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x2b): undefined reference to `Rf_allocList'
Rgtsvm_RI.cpp:(.text+0x35): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x40): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x4a): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x57): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x65): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x6e): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x7a): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x87): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x91): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x9e): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0xac): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0xb5): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0xbd): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0xca): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0xd4): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0xe1): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0xef): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0xf8): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x100): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x10d): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x117): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x124): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x132): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x13b): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x143): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x150): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x15a): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x167): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x175): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x17e): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x186): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x199): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x1a5): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1b6): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x1be): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x1c7): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x1cf): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x1db): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x1e5): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1ee): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x1fc): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x205): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x20d): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x21d): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x227): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x230): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x23e): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x247): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x24f): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x25e): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x26a): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x27b): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x289): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x292): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x29a): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x2a4): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x2b5): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x2c5): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x2d1): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x2e1): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x2ef): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x2fd): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x309): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x317): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x325): undefined reference to `INTEGER'
Rgtsvm_RI.o:Rgtsvm_RI.cpp:(.text+0x336): more undefined references to `INTEGER' follow
Rgtsvm_RI.o: In function `gtsvmtrain_epsregression':
Rgtsvm_RI.cpp:(.text+0x37a): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x38b): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x39c): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x3ad): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x3be): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x3cf): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x3e0): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x3f1): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x402): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x413): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x424): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x438): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x44c): undefined reference to `INTEGER'
Rgtsvm_RI.o:Rgtsvm_RI.cpp:(.text+0x460): more undefined references to `INTEGER' follow
Rgtsvm_RI.o: In function `gtsvmtrain_epsregression':
Rgtsvm_RI.cpp:(.text+0x474): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x483): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x492): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x4a1): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x553): undefined reference to `Rf_unprotect'
Rgtsvm_RI.o: In function `gtsvmpredict_epsregression':
Rgtsvm_RI.cpp:(.text+0x58d): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x59b): undefined reference to `Rf_allocList'
Rgtsvm_RI.cpp:(.text+0x5a5): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x5b0): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x5bc): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x5cd): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x5db): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x5e4): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x5f0): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x5fc): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x608): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x619): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x627): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x630): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x638): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x644): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x64e): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x657): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x665): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x66e): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x676): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x682): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x68c): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x695): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x6a3): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x6ac): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x6b4): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x6c0): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x6d1): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x6dd): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x6e9): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x6f9): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x70a): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x71b): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x72c): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x73d): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x74e): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x75f): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x770): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x781): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x792): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x7a3): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x7b4): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x7c5): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x7d6): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x7e7): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x7f8): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x809): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x81a): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x82b): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x83c): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x84d): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x861): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x875): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x889): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x89d): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x8ac): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x8bb): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x8ca): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x97c): undefined reference to `Rf_unprotect'
Rgtsvm_RI.o: In function `gtsvmtrain_classfication':
Rgtsvm_RI.cpp:(.text+0x9ad): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x9bc): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x9ca): undefined reference to `Rf_allocList'
Rgtsvm_RI.cpp:(.text+0x9d4): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x9df): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x9eb): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x9f7): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0xa05): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0xa0e): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0xa1a): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0xa27): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0xa33): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0xa3f): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0xa4d): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0xa56): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0xa5e): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0xa6b): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0xa77): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0xa83): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0xa91): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0xa9a): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0xaa2): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0xaaf): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0xabb): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0xac7): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0xad5): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0xade): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0xae6): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0xaf2): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0xafe): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0xb0a): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0xb18): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0xb21): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0xb29): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0xb35): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0xb41): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0xb4d): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0xb5b): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0xb64): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0xb6c): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0xb8c): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0xb98): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0xba4): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0xbb2): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0xbbb): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0xbc3): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0xbcf): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0xbdb): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0xbec): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0xbfa): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0xc03): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0xc0b): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0xc17): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0xc23): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0xc34): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0xc42): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0xc4b): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0xc53): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0xc5f): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0xc69): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0xc72): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0xc80): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0xc89): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0xc91): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0xc9d): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0xca7): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0xcb0): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0xcbe): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0xcc7): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0xccf): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0xcd9): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0xcea): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0xcf6): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0xd02): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0xd12): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0xd20): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0xd2e): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0xd3c): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0xd4c): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0xd5a): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0xd68): undefined reference to `INTEGER'
Rgtsvm_RI.o:Rgtsvm_RI.cpp:(.text+0xd76): more undefined references to `INTEGER' follow
Rgtsvm_RI.o: In function `gtsvmtrain_classfication':
Rgtsvm_RI.cpp:(.text+0xdcb): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0xddc): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0xded): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0xdfe): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0xe0f): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0xe20): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0xe31): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0xe42): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0xe53): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0xe64): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0xe75): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0xe86): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0xe9a): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0xeae): undefined reference to `INTEGER'
Rgtsvm_RI.o:Rgtsvm_RI.cpp:(.text+0xec2): more undefined references to `INTEGER' follow
Rgtsvm_RI.o: In function `gtsvmtrain_classfication':
Rgtsvm_RI.cpp:(.text+0xed6): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0xee5): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0xef4): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0xf03): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0xfca): undefined reference to `Rf_unprotect'
Rgtsvm_RI.o: In function `gtsvmpredict_classfication':
Rgtsvm_RI.cpp:(.text+0xffd): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x100c): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x101a): undefined reference to `Rf_allocList'
Rgtsvm_RI.cpp:(.text+0x1024): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x102f): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x103b): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x104c): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x105a): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x1063): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x106f): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x107e): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x108a): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x109b): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x10a9): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x10b2): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x10ba): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x10c6): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x10d0): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x10d9): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x10e7): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x10f0): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x10f8): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x1104): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x110e): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1117): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x1125): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x112e): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x1136): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x1142): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1153): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x115f): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x116b): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x117b): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x118c): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x119d): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x11ae): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x11bf): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x11d0): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x11e1): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x11f2): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1203): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1214): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1225): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1236): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1247): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1258): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1269): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x127a): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x128b): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x129c): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x12ad): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x12be): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x12cf): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x12e0): undefined reference to `INTEGER'
Rgtsvm_RI.o:Rgtsvm_RI.cpp:(.text+0x12f4): more undefined references to `INTEGER' follow
Rgtsvm_RI.o: In function `gtsvmpredict_classfication':
Rgtsvm_RI.cpp:(.text+0x1308): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x131c): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1330): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x133f): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x134e): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x135d): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x141a): undefined reference to `Rf_unprotect'
Rgtsvm_RI.o: In function `gtsvmpredict_loadsvm':
Rgtsvm_RI.cpp:(.text+0x1522): undefined reference to `Rf_allocList'
Rgtsvm_RI.cpp:(.text+0x152c): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1537): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x1541): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x154a): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x1558): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x1561): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x1569): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x1575): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x158d): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x15af): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x15bd): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x15cb): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x15d9): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x15e7): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x15f5): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1603): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1611): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x161f): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x162d): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x163b): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1649): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1657): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1665): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1673): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1681): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x168d): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1699): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x16ec): undefined reference to `R_NilValue'
Rgtsvm_RI.cpp:(.text+0x1701): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x1710): undefined reference to `R_MakeExternalPtr'
Rgtsvm_RI.cpp:(.text+0x171a): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1727): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x172f): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x1738): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x1744): undefined reference to `Rf_unprotect'
Rgtsvm_RI.cpp:(.text+0x1775): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1783): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1791): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x179f): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x17ad): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x17bb): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x17c9): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x17d7): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x17e5): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x17f3): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x17ff): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x180d): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x181b): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1829): undefined reference to `INTEGER'
Rgtsvm_RI.o:Rgtsvm_RI.cpp:(.text+0x1837): more undefined references to `INTEGER' follow
Rgtsvm_RI.o: In function `gtsvmpredict_loadsvm':
Rgtsvm_RI.cpp:(.text+0x1845): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1853): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x185f): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x186b): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x18f0): undefined reference to `Rprintf'
Rgtsvm_RI.cpp:(.text+0x190b): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x191b): undefined reference to `Rprintf'
Rgtsvm_RI.cpp:(.text+0x1923): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1935): undefined reference to `Rf_unprotect'
Rgtsvm_RI.o: In function `gtsvmpredict_unloadsvm':
Rgtsvm_RI.cpp:(.text+0x1969): undefined reference to `Rf_allocList'
Rgtsvm_RI.cpp:(.text+0x1973): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x197e): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x1988): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1991): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x199f): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x19a8): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x19b0): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x19b8): undefined reference to `TYPEOF'
Rgtsvm_RI.cpp:(.text+0x19c9): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x19e1): undefined reference to `Rf_unprotect'
Rgtsvm_RI.cpp:(.text+0x19f5): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x19ff): undefined reference to `CAR'
Rgtsvm_RI.o: In function `gtsvmpredict_epsregression_direct':
Rgtsvm_RI.cpp:(.text+0x1a3a): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1a48): undefined reference to `Rf_allocList'
Rgtsvm_RI.cpp:(.text+0x1a52): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1a5d): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x1a67): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1a74): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x1a82): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x1a8b): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x1a93): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x1a9f): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x1aab): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1ab7): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x1ac5): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x1ace): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x1ad6): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x1ae2): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x1aee): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1afa): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x1b08): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x1b11): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x1b19): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x1b25): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x1b2f): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1b38): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x1b46): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x1b4f): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x1b57): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x1b61): undefined reference to `TYPEOF'
Rgtsvm_RI.cpp:(.text+0x1b75): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1b88): undefined reference to `Rf_unprotect'
Rgtsvm_RI.cpp:(.text+0x1ba8): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1bb9): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1bc5): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1bd3): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1be1): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1bf2): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1c03): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1c14): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1c25): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1c36): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1c47): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1c58): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1c66): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1c74): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1c82): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1c8e): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1c9a): undefined reference to `CAR'
Rgtsvm_RI.o: In function `gtsvmpredict_classfication_direct':
Rgtsvm_RI.cpp:(.text+0x1d0a): undefined reference to `CAR'
Rgtsvm_RI.cpp:(.text+0x1d28): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1d39): undefined reference to `Rf_allocList'
Rgtsvm_RI.cpp:(.text+0x1d46): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1d51): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x1d5c): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1d6b): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x1d79): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x1d82): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x1d8a): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x1d98): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x1da3): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1dae): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x1dbc): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x1dc5): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x1dcd): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x1de3): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x1dee): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1df9): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x1e07): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x1e10): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x1e18): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x1e26): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x1e31): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x1e3c): undefined reference to `SETCAR'
Rgtsvm_RI.cpp:(.text+0x1e4a): undefined reference to `Rf_install'
Rgtsvm_RI.cpp:(.text+0x1e53): undefined reference to `SET_TAG'
Rgtsvm_RI.cpp:(.text+0x1e5b): undefined reference to `CDR'
Rgtsvm_RI.cpp:(.text+0x1e64): undefined reference to `TYPEOF'
Rgtsvm_RI.cpp:(.text+0x1e7a): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1e8f): undefined reference to `Rf_unprotect'
Rgtsvm_RI.cpp:(.text+0x1eaf): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1ebb): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1ec7): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1ed3): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1edf): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1eeb): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1ef7): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1f03): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1f0f): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1f1b): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1f27): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1f33): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1f3f): undefined reference to `REAL'
Rgtsvm_RI.cpp:(.text+0x1f4b): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1f57): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1f63): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x1f6e): undefined reference to `CAR'
Rgtsvm_RI.o: In function `selectGPUDevice':
Rgtsvm_RI.cpp:(.text+0x2027): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x2031): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x2041): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x205f): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x2072): undefined reference to `Rf_unprotect'
Rgtsvm_RI.cpp:(.text+0x2097): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x20ab): undefined reference to `Rprintf'
Rgtsvm_RI.cpp:(.text+0x20b3): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x20c3): undefined reference to `Rprintf'
Rgtsvm_RI.o: In function `resetGPUdevice':
Rgtsvm_RI.cpp:(.text+0x20f5): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x20ff): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x2107): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x211f): undefined reference to `Rf_unprotect'
Rgtsvm_RI.o: In function `getGPUdeviceCount':
Rgtsvm_RI.cpp:(.text+0x2146): undefined reference to `Rf_allocVector'
Rgtsvm_RI.cpp:(.text+0x2150): undefined reference to `Rf_protect'
Rgtsvm_RI.cpp:(.text+0x2158): undefined reference to `INTEGER'
Rgtsvm_RI.cpp:(.text+0x216e): undefined reference to `Rf_unprotect'
collect2: error: ld returned 1 exit status
Makefile:78: recipe for target 'Rgtsvm.so' failed
make: *** [Rgtsvm.so] Error 1
ERROR: compilation failed for package ‘Rgtsvm’
* removing ‘/home/sivlab/R/x86_64-pc-linux-gnu-library/3.5/Rgtsvm’

Maybe the error depends on these lines of code?

/usr/local/cuda/bin/nvcc -shared -L/usr/local/cuda/lib -lcuda Rgtsvm.o Rgtsvm2.o svmlight.o svm.o cuda_exception.o Rgtsvm_RI.o cuda_sparse_kernel.o cuda_reduce.o cuda_find_largest.o cuda_partial_sum.o cuda_array.o -o Rgtsvm.so 
/usr/bin/ld: i386 architecture of input file `Rgtsvm.o' is incompatible with i386:x86-64 output
/usr/bin/ld: i386 architecture of input file `Rgtsvm2.o' is incompatible with i386:x86-64 output
/usr/bin/ld: i386 architecture of input file `svmlight.o' is incompatible with i386:x86-64 output
/usr/bin/ld: i386 architecture of input file `svm.o' is incompatible with i386:x86-64 output
/usr/bin/ld: i386 architecture of input file `cuda_exception.o' is incompatible with i386:x86-64 output
/usr/bin/ld: i386 architecture of input file `Rgtsvm_RI.o' is incompatible with i386:x86-64 output

[wzhy2000]

I found this in your output:

checking whether this is a 64-bit version of CUDA... checking for /usr/local/cuda/lib64/libcublas.so... no
The configure checked your CUDA version and determined the compile option "-m32"

But based on your R system, it should be "-m64"

installing to library ‘/home/sivlab/R/x86_64-pc-linux-gnu-library/3.5’

Can you check your CUDA installation again?

[sivlab]

Can you check your CUDA installation again?

Sure, maybe CUDA installation went wrong, in fact in "/usr/local/cuda/" I have only two directories :/
I've installed CUDA again but now the version 9.0 with nvidia-driver-390 (that is the versione "paired" with CUDA 9.0) and everything was fine.

Now I want to try to uninstall everything and try again with CUDA 10.1 and nvidia-driver-418 to see if the problem persists.

P.S.
There is blog/forum/support to ask questions about rgtsvm?

[sivlab]

** UPDATE **
Problems come from CUDA version 10.1. Actually I suppose that is a problem from version 9.0 or greater.
No problem at all with version of nvidia-driver, in fact I have installed nvidia-driver-418 (the latest).

Technical details:
-The command:
R CMD INSTALL --configure-args="--with-cuda-home=$YOUR_CUDA_HOME --with-boost-home=$YOUR_BOOST_HOME" Rgtsvm
is looking for the /usr/local/cuda/lib64/libcublas.so file, but as far as I can tell reading online, for CUDA > 9.0, that file has moved from /usr/local/cuda/lib64/ to /usr/lib/x86_64-linux-gnu/.

Maybe changes to configure files can lead to an installation of Rgtsvm with latest CUDA releases.

[NathanSkene]

I had the same error. I have made an amended version of the config file in a fork that looks for the file in: "/usr/lib/x86_64-linux-gnu/"

The amended file is here: https://github.com/NathanSkene/Rgtsvm/blob/master/Rgtsvm/configure

This solves that problem. Don't know how it affects earlier versions of CUDA so have not created a pull request.

[omsai]

To restate the underlying issue, 64-bit detection of the nvidia CUDA library is broken which we can see in this line of the original post of @sivlab

checking whether this is a 64-bit version of CUDA... checking for /usr/local/cuda/lib64/libcublas.so... no

I fail to understand why it's even necessary to maintain compatibility with 32-bit nvidia libraries for scientific computing in the year 2021, much less fail through to 32-bit when the detection fails 🤦

One can get rid of the detection clause altogether and use the 64-bit settings. Instead of modifying the generated configure file, one can instead modify configure.ac and regenerate configure with autotools.

$ awk -i inplace -v RS='' -v ORS='\n' '/check_bit/ { print $17; print $18; next } { print; print '\n' }' configure.ac
$ GIT_PAGER=cat git diff  # check that our substitution had the intended effect.
...
#################### CUDA PATH ####################
 
 AC_ARG_WITH([cuda-home],
@@ -44,16 +42,8 @@ AC_CHECK_FILE([${CUDA_INC}/cublas.h],
 	[AC_MSG_ERROR([CUDA headers not found!])]
 )
 
-AC_MSG_CHECKING([whether this is a 64-bit version of CUDA])
-AC_CHECK_FILE([${CUDA_HOME}/lib64/libcublas.so], [check_bit=64-bit])
-if test "${check_bit}" == "64-bit"; then
-	BITS="64"
-	LDFLAGS="-L${CUDA_HOME}/lib64"
-else
-	BITS="32"
-	LDFLAGS="-L${CUDA_HOME}/lib"
-fi
-
+BITS="64"
+LDFLAGS="-L${CUDA_HOME}/lib64"
 LIBS="-lcuda"
 
 #################### BOOST LIBRARY ####################
...
$ autoreconf