[R] Expand mypy coverage (#6821, PR #7845)

Author: hannes-ucsc

.mypy.ini

@@ -79,7 +79,14 @@ modules =
     azul.functions,
     azul.service.storage_service,
     azul.service.source_service,
-    azul.service
+    azul.service,
+    azul.service.source_controller,
+    azul.service.query_controller,
+    azul.service.index_controller,
+    azul.service.catalog_controller,
+    azul.service.manifest_controller,
+    azul.service.repository_controller,
+    azul.service.drs_controller
 
 
 packages =

bin/wheels/runtime/charset_normalizer-3.4.4-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl

@@ -13687,7 +13687,7 @@
                         "description": "Gateway timeout. The frontend server did not receive a timely response from the backend server. \nIt is unlikely that a retry will be successful until the problem is\nresolved by an operator.\n"
                     },
                     "200": {
-                        "description": "\nEmulates the response code and headers of\n/repository/files/{file_uuid} while bypassing the default\nuser agent behavior. Note that the status code of a\nsuccessful response will be 200 while the `Status` field of\nits body will be 302.\n\nThe response described here is intended to be processed by\nclient-side Javascript such that the emulated headers can be\nhandled in Javascript rather than relying on the native\nimplementation by the web browser.\n",
+                        "description": "\nEmulates the response code and headers of\n/repository/files/{file_uuid} while bypassing\nthe default user agent behavior. Note that the status\ncode of a successful response will be 200 while the\n`Status` field of its body will be 302.\n\nThe response described here is intended to be processed by\nclient-side Javascript such that the emulated headers can be\nhandled in Javascript rather than relying on the native\nimplementation by the web browser.\n",
                         "content": {
                             "application/json": {
                                 "schema": {

bin/wheels/runtime/charset_normalizer-3.4.5-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl

@@ -2,21 +2,20 @@ atomicwrites==1.4.1
 attrs==25.4.0
 aws-requests-auth==0.4.3
 awscli==1.44.42
-blessed==1.32.0
+blessed==1.33.0
 boto3==1.42.52
 boto3-stubs-lite==1.42.52
 botocore==1.42.52
 botocore-stubs==1.42.41
 certifi==2026.2.25
 cffi==2.0.0
 chalice==1.32.0+18
-charset-normalizer==3.4.4
+charset-normalizer==3.4.5
 chevron==0.14.0
 click==8.3.1
 colorama==0.4.6
 coverage==7.13.4
 cryptography==46.0.5
-deprecated==1.3.1
 docker==7.1.0
 docutils==0.19
 editor==1.7.0
@@ -38,7 +37,7 @@ google-cloud-core==2.5.0
 google-cloud-storage==3.9.0
 google-crc32c==1.8.0
 google-resumable-media==2.8.0
-googleapis-common-protos==1.72.0
+googleapis-common-protos==1.73.0
 greenlet==3.3.2
 grpc-google-iam-v1==0.14.3
 grpcio==1.78.0
@@ -65,7 +64,7 @@ mypy==1.19.1
 mypy-boto3-apigateway==1.42.3
 mypy-boto3-cloudwatch==1.42.56
 mypy-boto3-dynamodb==1.42.55
-mypy-boto3-ec2==1.42.58
+mypy-boto3-ec2==1.42.62
 mypy-boto3-ecr==1.42.57
 mypy-boto3-es==1.42.61
 mypy-boto3-iam==1.42.4
@@ -124,8 +123,9 @@ six==1.17.0
 smmap==5.0.2
 strict-rfc3339==0.7
 tqdm==4.67.3
-types-awscrt==0.31.2
+types-awscrt==0.31.3
 types-chevron==0.14.2
+types-jsonschema==4.26.0.20260202
 types-s3transfer==0.16.0
 typing_extensions==4.15.0
 uritemplate==4.2.0
@@ -134,7 +134,6 @@ watchdog==6.0.0
 wcwidth==0.6.0
 werkzeug==3.1.6
 wheel==0.46.3
-wrapt==2.1.1
 www-authenticate==0.9.2
 xmltodict==1.0.4
 xmod==1.9.0

bin/wheels/runtime/deprecated-1.3.1-py2.py3-none-any.whl

@@ -1,4 +1,4 @@
-blessed==1.32.0
+blessed==1.33.0
 botocore-stubs==1.42.41
 click==8.3.1
 colorama==0.4.6
@@ -19,7 +19,7 @@ mccabe==0.7.0
 mypy-boto3-apigateway==1.42.3
 mypy-boto3-cloudwatch==1.42.56
 mypy-boto3-dynamodb==1.42.55
-mypy-boto3-ec2==1.42.58
+mypy-boto3-ec2==1.42.62
 mypy-boto3-ecr==1.42.57
 mypy-boto3-es==1.42.61
 mypy-boto3-iam==1.42.4
@@ -49,7 +49,7 @@ rfc3339-validator==0.1.4
 runs==1.3.0
 smmap==5.0.2
 tqdm==4.67.3
-types-awscrt==0.31.2
+types-awscrt==0.31.3
 types-s3transfer==0.16.0
 uritemplate==4.2.0
 wcwidth==0.6.0

…is_common_protos-1.72.0-py3-none-any.whl …is_common_protos-1.73.0-py3-none-any.whlbin/wheels/runtime/googleapis_common_protos-1.72.0-py3-none-any.whl renamed to bin/wheels/runtime/googleapis_common_protos-1.73.0-py3-none-any.whl bin/wheels/runtime/googleapis_common_protos-1.72.0-py3-none-any.whl renamed to bin/wheels/runtime/googleapis_common_protos-1.73.0-py3-none-any.whl

@@ -12,6 +12,7 @@ gitpython==3.1.46
 google-api-python-client==2.190.0
 google-cloud-bigquery-reservation==1.22.0
 google-cloud-storage==3.9.0
+types-jsonschema==4.26.0.20260202
 jq==1.11.0
 moto[s3,sqs,sns,dynamodb,iam]==5.1.20  # match the extras with the backends listed in AzulUnitTestCase._reset_moto
 mypy==1.19.1