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infra[subject] Project infrastructure like CI/CD, build and deployment scripts[subject] Project infrastructure like CI/CD, build and deployment scriptsmirror[subject] Code and infrastructure for mirroring data files[subject] Code and infrastructure for mirroring data filesno demo[process] Not to be demonstrated at the end of the sprint[process] Not to be demonstrated at the end of the sprint
Description
https://gitlab.dev.singlecell.gi.ucsc.edu/ucsc/azul/-/jobs/135853
======================================================================
FAIL: test_indexing (integration_test.IndexingIntegrationTest.test_indexing) [mirror_sources_and_files]
----------------------------------------------------------------------
Traceback (most recent call last):
File "/builds/ucsc/azul/test/integration_test.py", line 400, in subTest
yield
File "/builds/ucsc/azul/test/integration_test.py", line 1820, in _test_mirroring
repository_file, source, file_response = self._get_one_mirrorable_file(catalog)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
File "/builds/ucsc/azul/test/integration_test.py", line 771, in _get_one_mirrorable_file
outer_file, inner_file = self._get_one_file(catalog,
~~~~~~~~~~~~~~~~~~^^^^^^^^^
max_size=config.catalogs[catalog].mirror_limit)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/builds/ucsc/azul/test/integration_test.py", line 815, in _get_one_file
self.fail('No files found')
~~~~~~~~~^^^^^^^^^^^^^^^^^^
AssertionError: No files found
2026-02-28T23:39:31.335214Z 01E 2026-02-28 23:39:31,334 INFO MainThread test.integration_test: Beginning sub-test [mirror_sources_and_files] {}
2026-02-28T23:39:31.337294Z 01E 2026-02-28 23:39:31,336 INFO MainThread azul.oauth2: Making GET request to 'https://service.sandbox.dev.singlecell.gi.ucsc.edu/index/files?catalog=dcp3-it&filters=%7B%22fileFormat%22%3A+%7B%22is%22%3A+%5B%22fastq%22%2C+%22fastq.gz%22%5D%7D%2C+%22fileSize%22%3A+%7B%22within%22%3A+%5B%5B1%2C+1610612736%5D%5D%7D%7D&size=1&order=asc&sort=fileSize'
2026-02-28T23:39:31.337358Z 01E 2026-02-28 23:39:31,337 INFO MainThread azul.oauth2: … without a request body
2026-02-28T23:39:31.338458Z 01E 2026-02-28 23:39:31,338 INFO MainThread azul.oauth2: … with request headers [('x-goog-api-client', 'cred-type/sa'), ('authorization', 'REDACTED')]
2026-02-28T23:39:31.553925Z 01E 2026-02-28 23:39:31,553 INFO MainThread azul.oauth2: Got 200 response after 0.216s from GET to https://service.sandbox.dev.singlecell.gi.ucsc.edu/index/files?catalog=dcp3-it&filters=%7B%22fileFormat%22%3A+%7B%22is%22%3A+%5B%22fastq%22%2C+%22fastq.gz%22%5D%7D%2C+%22fileSize%22%3A+%7B%22within%22%3A+%5B%5B1%2C+1610612736%5D%5D%7D%7D&size=1&order=asc&sort=fileSize
2026-02-28T23:39:31.554343Z 01E 2026-02-28 23:39:31,553 INFO MainThread azul.oauth2: … with response headers HTTPHeaderDict({'Content-Type': 'application/json', 'Content-Length': '2323', 'Connection': 'keep-alive', 'Date': 'Sat, 28 Feb 2026 23:39:31 GMT', 'X-Amzn-Trace-Id': 'Root=1-69a37cb3-41e5dffb1e2d04cd667dccab;Parent=32a3f1d2e25c0bca;Sampled=0;Lineage=1:bf371b33:0', 'x-amzn-RequestId': 'f96f3211-24da-4e36-8413-47a6f51523cc', 'Referrer-Policy': 'strict-origin-when-cross-origin', 'X-XSS-Protection': '1; mode=block', 'Access-Control-Allow-Origin': '*', 'Strict-Transport-Security': 'max-age=63072000; includeSubDomains; preload', 'Access-Control-Allow-Headers': 'Authorization,Content-Type,X-Amz-Date,X-Amz-Security-Token,X-Api-Key', 'X-Frame-Options': 'DENY', 'Content-Security-Policy': "default-src 'self';img-src 'self' data:;script-src 'self';style-src 'self';frame-ancestors 'none';form-action 'self'", 'x-amz-apigw-id': 'ZhBsFH9ToAMECZw=', 'Cache-Control': 'no-store', 'X-Content-Type-Options': 'nosniff', 'X-Cache': 'Miss from cloudfront', 'Via': '1.1 6e3cb302b7b47cb215ef7af27e526b74.cloudfront.net (CloudFront)', 'X-Amz-Cf-Pop': 'IAD61-P13', 'X-Amz-Cf-Id': '3QuYtdhSTCmrPj7iHKAZJUlCs4P9NhWibe80FSRvGv3OjAy1qSX25A=='})
2026-02-28T23:39:31.554352Z 01E 2026-02-28 23:39:31,553 INFO MainThread azul.oauth2: … with a response body of length 2323 starting in b'{"pagination":{"count":0,"total":0,"size":1,"next":null,"previous":null,"pages":0,"sort":"fileSize","order":"asc"},"termFacets":{"organ":{"terms":[],"total":0,"type":"terms"},"sampleEntityType":{"terms":[],"total":0,"type":"terms"},"dataUseRestriction":{"terms":[],"total":0,"type":"terms"},"project":{"terms":[],"total":0,"type":"terms"},"sampleDisease":{"terms":[],"total":0,"type":"terms"},"nucleicAcidSource":{"terms":[],"total":0,"type":"terms"},"assayType":{"terms":[],"total":0,"type":"terms"},"instrumentManufacturerModel":{"terms":[],"total":0,"type":"terms"},"institution":{"terms":[],"total":0,"type":"terms"},"donorDisease":{"terms":[],"total":0,"type":"terms"},"organismAge":{"terms":[],"total":0,"type":"terms"},"contentDescription":{"terms":[],"total":0,"type":"terms"},"pairedEnd":{"terms":[],"total":0,"type":"terms"},"developmentStage":{"terms":[],"total":0,"type":"terms"},"preservationMethod":{"terms":[],"total":0,"type":"terms"},"genusSpecies":{"terms":[],"total":0,"type":"terms"},"projectTitle":{"...'
2026-02-28T23:39:31.555603Z 01E 2026-02-28 23:39:31,555 INFO MainThread azul.oauth2: Making GET request to 'https://service.sandbox.dev.singlecell.gi.ucsc.edu/index/files?catalog=dcp3-it&filters=%7B%22fileSize%22%3A+%7B%22within%22%3A+%5B%5B1%2C+1610612736%5D%5D%7D%7D&size=1&order=asc&sort=fileSize'
2026-02-28T23:39:31.555619Z 01E 2026-02-28 23:39:31,555 INFO MainThread azul.oauth2: … without a request body
2026-02-28T23:39:31.556235Z 01E 2026-02-28 23:39:31,555 INFO MainThread azul.oauth2: … with request headers [('x-goog-api-client', 'cred-type/sa'), ('authorization', 'REDACTED')]
2026-02-28T23:39:31.701112Z 01E 2026-02-28 23:39:31,693 INFO MainThread azul.oauth2: Got 200 response after 0.138s from GET to https://service.sandbox.dev.singlecell.gi.ucsc.edu/index/files?catalog=dcp3-it&filters=%7B%22fileSize%22%3A+%7B%22within%22%3A+%5B%5B1%2C+1610612736%5D%5D%7D%7D&size=1&order=asc&sort=fileSize
2026-02-28T23:39:31.701128Z 01E 2026-02-28 23:39:31,694 INFO MainThread azul.oauth2: … with response headers HTTPHeaderDict({'Content-Type': 'application/json', 'Content-Length': '2349', 'Connection': 'keep-alive', 'Date': 'Sat, 28 Feb 2026 23:39:31 GMT', 'X-Amzn-Trace-Id': 'Root=1-69a37cb3-184dec4562e998385122f936;Parent=6396ac09afc91564;Sampled=0;Lineage=1:bf371b33:0', 'x-amzn-RequestId': '4f4a3604-40d9-411c-8e3d-9f31df296732', 'Referrer-Policy': 'strict-origin-when-cross-origin', 'X-XSS-Protection': '1; mode=block', 'Access-Control-Allow-Origin': '*', 'Strict-Transport-Security': 'max-age=63072000; includeSubDomains; preload', 'Access-Control-Allow-Headers': 'Authorization,Content-Type,X-Amz-Date,X-Amz-Security-Token,X-Api-Key', 'X-Frame-Options': 'DENY', 'Content-Security-Policy': "default-src 'self';img-src 'self' data:;script-src 'self';style-src 'self';frame-ancestors 'none';form-action 'self'", 'x-amz-apigw-id': 'ZhBsHH5MoAMEJgA=', 'Cache-Control': 'no-store', 'X-Content-Type-Options': 'nosniff', 'X-Cache': 'Miss from cloudfront', 'Via': '1.1 6e3cb302b7b47cb215ef7af27e526b74.cloudfront.net (CloudFront)', 'X-Amz-Cf-Pop': 'IAD61-P13', 'X-Amz-Cf-Id': 'QeJbhLp5D94x0Ld9K5E0ts0E-BJd7FWOnjlT5PMy7Wp_vSrWzN4ahA=='})
2026-02-28T23:39:31.701154Z 01E 2026-02-28 23:39:31,694 INFO MainThread azul.oauth2: … with a response body of length 2349 starting in b'{"pagination":{"count":0,"total":0,"size":1,"next":null,"previous":null,"pages":0,"sort":"fileSize","order":"asc"},"termFacets":{"organ":{"terms":[],"total":0,"type":"terms"},"sampleEntityType":{"terms":[],"total":0,"type":"terms"},"dataUseRestriction":{"terms":[],"total":0,"type":"terms"},"project":{"terms":[],"total":0,"type":"terms"},"sampleDisease":{"terms":[],"total":0,"type":"terms"},"nucleicAcidSource":{"terms":[],"total":0,"type":"terms"},"assayType":{"terms":[],"total":0,"type":"terms"},"instrumentManufacturerModel":{"terms":[],"total":0,"type":"terms"},"institution":{"terms":[],"total":0,"type":"terms"},"donorDisease":{"terms":[],"total":0,"type":"terms"},"organismAge":{"terms":[],"total":0,"type":"terms"},"contentDescription":{"terms":[],"total":0,"type":"terms"},"pairedEnd":{"terms":[],"total":0,"type":"terms"},"developmentStage":{"terms":[],"total":0,"type":"terms"},"preservationMethod":{"terms":[],"total":0,"type":"terms"},"genusSpecies":{"terms":[],"total":0,"type":"terms"},"projectTitle":{"...'
2026-02-28T23:39:31.701179Z 01E 2026-02-28 23:39:31,694 INFO MainThread test.integration_test: Failed sub-test [mirror_sources_and_files] {}
2026-02-28T23:39:31.701181Z 01E test_indexing (integration_test.IndexingIntegrationTest.test_indexing) [mirror_sources_and_files] ... FAIL
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infra[subject] Project infrastructure like CI/CD, build and deployment scripts[subject] Project infrastructure like CI/CD, build and deployment scriptsmirror[subject] Code and infrastructure for mirroring data files[subject] Code and infrastructure for mirroring data filesno demo[process] Not to be demonstrated at the end of the sprint[process] Not to be demonstrated at the end of the sprint