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Required Software
Alejandro Barrera edited this page May 2, 2017
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2 revisions
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http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/
- bigWigToBedGraph
- bedGraphToBigWig
- bedClip
- bedSort
- bamtools >=2.2.3
- bedtools2 >=2.25.0
- bowtie ==0.12.9
- deeptools >=2.3.5
- fastqc >=0.11.4
- macs2 >=2.1.0.20151222
- samtools >=1.3
- picard >=1.130
- preseq ==v2.0
- STAR >=2.4.1a
- rsem >=1.2.21
- subread >=1.4.6-p4
- R >=3.2.0
- phantompeakqualtools ==1.10.1
- node.js >=4.3.1
GGR-cwl pipelines developed by the www.reddylab.org @ Duke GCB