EAMxx: fix standalone tests do comply with input files changes

bartgol · bartgol · commit 516225c54a9f · 2025-08-11T12:24:16.000-06:00
diff --git a/components/eamxx/src/control/tests/ad_tests.yaml b/components/eamxx/src/control/tests/ad_tests.yaml
@@ -9,7 +9,7 @@ initial_conditions:
   V: [2.0, 3.0]
   Z: "A"
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [dummy1, dummy2, dummy3]
   schedule_type: sequential
 
diff --git a/components/eamxx/tests/multi-process/dynamics_physics/homme_shoc_cld_p3_rrtmgp/input.yaml b/components/eamxx/tests/multi-process/dynamics_physics/homme_shoc_cld_p3_rrtmgp/input.yaml
@@ -23,7 +23,7 @@ initial_conditions:
   hetfrz_contact_nucleation_tend: 0.1
   hetfrz_deposition_nucleation_tend: 0.1
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [homme,physics]
   schedule_type: sequential
   homme:
diff --git a/components/eamxx/tests/multi-process/dynamics_physics/homme_shoc_cld_p3_rrtmgp_pg2/input.yaml b/components/eamxx/tests/multi-process/dynamics_physics/homme_shoc_cld_p3_rrtmgp_pg2/input.yaml
@@ -30,7 +30,7 @@ initial_conditions:
   sfc_alb_dif_nir: 0.0
   landfrac: 0.5
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [homme,physics]
   schedule_type: sequential
   homme:
diff --git a/components/eamxx/tests/multi-process/dynamics_physics/homme_shoc_cld_spa_p3_rrtmgp/input.yaml b/components/eamxx/tests/multi-process/dynamics_physics/homme_shoc_cld_spa_p3_rrtmgp/input.yaml
@@ -19,7 +19,7 @@ initial_conditions:
   hetfrz_contact_nucleation_tend: 0.1
   hetfrz_deposition_nucleation_tend: 0.1
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [homme,physics]
   schedule_type: sequential
   homme:
diff --git a/components/eamxx/tests/multi-process/dynamics_physics/homme_shoc_cld_spa_p3_rrtmgp_128levels/input.yaml b/components/eamxx/tests/multi-process/dynamics_physics/homme_shoc_cld_spa_p3_rrtmgp_128levels/input.yaml
@@ -19,7 +19,7 @@ initial_conditions:
   hetfrz_contact_nucleation_tend: 0.1
   hetfrz_deposition_nucleation_tend: 0.1
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [homme,physics]
   schedule_type: sequential
   compute_tendencies: [T_mid, qv]
diff --git a/components/eamxx/tests/multi-process/dynamics_physics/homme_shoc_cld_spa_p3_rrtmgp_pg2_dp/input.yaml b/components/eamxx/tests/multi-process/dynamics_physics/homme_shoc_cld_spa_p3_rrtmgp_pg2_dp/input.yaml
@@ -37,7 +37,7 @@ initial_conditions:
   eddy_diff_mom: 0.02
   sgs_buoy_flux: -0.001
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [sc_import,homme,physics]
   schedule_type: sequential
   homme:
diff --git a/components/eamxx/tests/multi-process/dynamics_physics/mam/homme_shoc_cld_mam_aci_p3_mam_optics_rrtmgp_mam_drydep/input.yaml b/components/eamxx/tests/multi-process/dynamics_physics/mam/homme_shoc_cld_mam_aci_p3_mam_optics_rrtmgp_mam_drydep/input.yaml
@@ -41,7 +41,7 @@ initial_conditions:
   dgnumwet: 0.41417721820867320E-007
   wetdens: 0.15100083211582764E+004
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [homme,physics]
   schedule_type: sequential
   homme:
diff --git a/components/eamxx/tests/multi-process/dynamics_physics/mam/homme_shoc_cld_p3_mam_optics_rrtmgp/input.yaml b/components/eamxx/tests/multi-process/dynamics_physics/mam/homme_shoc_cld_p3_mam_optics_rrtmgp/input.yaml
@@ -25,7 +25,7 @@ initial_conditions:
   pbl_height : 1.0
   phis : 1.0
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [homme,physics]
   schedule_type: sequential
   homme:
diff --git a/components/eamxx/tests/multi-process/dynamics_physics/mam/homme_shoc_cld_spa_p3_rrtmgp_mam4_wetscav/input.yaml b/components/eamxx/tests/multi-process/dynamics_physics/mam/homme_shoc_cld_spa_p3_rrtmgp_mam4_wetscav/input.yaml
@@ -32,7 +32,7 @@ initial_conditions:
   wetdep_dust_bin3: 1e-5 # wet deposition of dust (bin3) [kg/m2/s]
   wetdep_dust_bin4: 1e-5 # wet deposition of dust (bin4) [kg/m2/s]
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [homme,physics]
   schedule_type: sequential
   homme:
diff --git a/components/eamxx/tests/multi-process/dynamics_physics/model_restart/input.yaml b/components/eamxx/tests/multi-process/dynamics_physics/model_restart/input.yaml
@@ -25,7 +25,7 @@ initial_conditions:
   aero_tau_sw: 0.0
   aero_tau_lw: 0.0
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [homme,physics]
   schedule_type: sequential
   homme:
diff --git a/components/eamxx/tests/multi-process/physics_only/atm_proc_subcycling/input.yaml b/components/eamxx/tests/multi-process/physics_only/atm_proc_subcycling/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   schedule_type: sequential
   atm_procs_list: [shoc,p3]
   number_of_subcycles: ${NUM_SUBCYCLES}
diff --git a/components/eamxx/tests/multi-process/physics_only/mam/mam4_srf_online_emiss_mam4_constituent_fluxes/input.yaml b/components/eamxx/tests/multi-process/physics_only/mam/mam4_srf_online_emiss_mam4_constituent_fluxes/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mam4_srf_online_emiss, mam4_constituent_fluxes]
   schedule_type: sequential
   mam4_srf_online_emiss:
diff --git a/components/eamxx/tests/multi-process/physics_only/mam/optics_rrtmgp/input.yaml b/components/eamxx/tests/multi-process/physics_only/mam/optics_rrtmgp/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mam4_optics, rrtmgp]
   schedule_type: sequential
   mam4_optics:
diff --git a/components/eamxx/tests/multi-process/physics_only/mam/p3_mam4_wetscav/input.yaml b/components/eamxx/tests/multi-process/physics_only/mam/p3_mam4_wetscav/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mac_mic, mam4_wetscav]
   schedule_type: sequential
   mac_mic:
diff --git a/components/eamxx/tests/multi-process/physics_only/mam/shoc_cldfrac_mam4_aci_p3/input.yaml b/components/eamxx/tests/multi-process/physics_only/mam/shoc_cldfrac_mam4_aci_p3/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mac_mic]
   schedule_type: sequential
   mac_mic:
diff --git a/components/eamxx/tests/multi-process/physics_only/mam/shoc_cldfrac_mam4_aci_p3_mam4_optics_rrtmgp/input.yaml b/components/eamxx/tests/multi-process/physics_only/mam/shoc_cldfrac_mam4_aci_p3_mam4_optics_rrtmgp/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mac_mic, mam4_optics, rrtmgp]
   schedule_type: sequential
   mac_mic:
diff --git a/components/eamxx/tests/multi-process/physics_only/mam/shoc_cldfrac_mam4_aci_p3_rrtmgp/input.yaml b/components/eamxx/tests/multi-process/physics_only/mam/shoc_cldfrac_mam4_aci_p3_rrtmgp/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mac_mic,rrtmgp]
   schedule_type: sequential
   mac_mic:
diff --git a/components/eamxx/tests/multi-process/physics_only/mam/shoc_cldfrac_p3_wetscav/input.yaml b/components/eamxx/tests/multi-process/physics_only/mam/shoc_cldfrac_p3_wetscav/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mac_mic, mam4_wetscav]
   schedule_type: sequential
   mac_mic:
diff --git a/components/eamxx/tests/multi-process/physics_only/mam/shoc_mam4_aci/input.yaml b/components/eamxx/tests/multi-process/physics_only/mam/shoc_mam4_aci/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mac_mic]
   schedule_type: sequential
   mac_mic:
diff --git a/components/eamxx/tests/multi-process/physics_only/mam/shoc_mam4_drydep/input.yaml b/components/eamxx/tests/multi-process/physics_only/mam/shoc_mam4_drydep/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mac_mic,mam4_drydep]
   schedule_type: sequential
   mac_mic:
diff --git a/components/eamxx/tests/multi-process/physics_only/shoc_cld_p3_rrtmgp/input.yaml b/components/eamxx/tests/multi-process/physics_only/shoc_cld_p3_rrtmgp/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mac_mic,rrtmgp]
   schedule_type: sequential
   mac_mic:
diff --git a/components/eamxx/tests/multi-process/physics_only/shoc_cld_spa_p3_rrtmgp/input.yaml b/components/eamxx/tests/multi-process/physics_only/shoc_cld_spa_p3_rrtmgp/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mac_mic,rrtmgp]
   schedule_type: sequential
   mac_mic:
diff --git a/components/eamxx/tests/multi-process/physics_only/shoc_p3_nudging/input_nudging.yaml b/components/eamxx/tests/multi-process/physics_only/shoc_p3_nudging/input_nudging.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   schedule_type: sequential
   atm_procs_list: [shoc,p3,nudging]
   p3:
diff --git a/components/eamxx/tests/multi-process/physics_only/shoc_p3_nudging/input_nudging_glob_novert.yaml b/components/eamxx/tests/multi-process/physics_only/shoc_p3_nudging/input_nudging_glob_novert.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   schedule_type: sequential
   atm_procs_list: [shoc,p3,nudging]
   p3:
diff --git a/components/eamxx/tests/multi-process/physics_only/shoc_p3_nudging/input_source_data.yaml b/components/eamxx/tests/multi-process/physics_only/shoc_p3_nudging/input_source_data.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   schedule_type: sequential
   atm_procs_list: [shoc,p3]
   p3:
diff --git a/components/eamxx/tests/python/pyp3/input.yaml b/components/eamxx/tests/python/pyp3/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [p3]
   p3:
     log_level: info
diff --git a/components/eamxx/tests/python/pyp3/p3_standalone.py b/components/eamxx/tests/python/pyp3/p3_standalone.py
@@ -40,7 +40,7 @@ def main ():
     nlevs = 72
     pyeamxx.create_grids_manager(ncols,nlevs,str(ic_file))
 
-    p3 = pyeamxx.AtmProc(yaml_input['atmosphere_processes']['p3'],'p3')
+    p3 = pyeamxx.AtmProc(yaml_input['eamxx']['p3'],'p3')
     params = p3.get_params()
     old = params.get_dbl('max_total_ni')
     print (f"max_total_ni: {params.get_dbl('max_total_ni')}")
diff --git a/components/eamxx/tests/single-process/cld_fraction/input.yaml b/components/eamxx/tests/single-process/cld_fraction/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [cld_fraction]
   cld_fraction:
     ice_cloud_threshold: 1e-12
diff --git a/components/eamxx/tests/single-process/cosp/input.yaml b/components/eamxx/tests/single-process/cosp/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [cosp]
   cosp:
     cosp_frequency: ${NUM_STEPS}
diff --git a/components/eamxx/tests/single-process/homme/input.yaml b/components/eamxx/tests/single-process/homme/input.yaml
@@ -12,7 +12,7 @@ initial_conditions:
   filename: ${SCREAM_DATA_DIR}/init/${EAMxx_tests_IC_FILE_72lev}
   topography_filename: ${TOPO_DATA_DIR}/${EAMxx_tests_TOPO_FILE}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [dynamics]
   dynamics:
     type: homme
diff --git a/components/eamxx/tests/single-process/mam/aci/input.yaml b/components/eamxx/tests/single-process/mam/aci/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mam4_aci]
   mam4_aci:
     wsubmin: 0.001
diff --git a/components/eamxx/tests/single-process/mam/aero_microphys/input.yaml b/components/eamxx/tests/single-process/mam/aero_microphys/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mam4_aero_microphys]
   mam4_aero_microphys:
    mam4_do_cond: true
diff --git a/components/eamxx/tests/single-process/mam/constituent_fluxes/input.yaml b/components/eamxx/tests/single-process/mam/constituent_fluxes/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mam4_constituent_fluxes]
   mam4_constituent_fluxes:
     create_fields_interval_checks: true
diff --git a/components/eamxx/tests/single-process/mam/drydep/input.yaml b/components/eamxx/tests/single-process/mam/drydep/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mam4_drydep]
   mam4_drydep:
     # Fractional land use file
diff --git a/components/eamxx/tests/single-process/mam/emissions/input.yaml b/components/eamxx/tests/single-process/mam/emissions/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mam4_srf_online_emiss]
   mam4_srf_online_emiss:
     # MAM4xx-Surface-Emissions
diff --git a/components/eamxx/tests/single-process/mam/optics/input.yaml b/components/eamxx/tests/single-process/mam/optics/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mam4_optics]
   mam4_optics:
     create_fields_interval_checks: true
diff --git a/components/eamxx/tests/single-process/mam/wet_scav/input.yaml b/components/eamxx/tests/single-process/mam/wet_scav/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [mam4_wetscav]
   mam4_wetscav:
    create_fields_interval_checks: true
diff --git a/components/eamxx/tests/single-process/ml_correction/input.yaml b/components/eamxx/tests/single-process/ml_correction/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [MLCorrection]
   ml_correction:
     ml_model_path_tq: NONE
diff --git a/components/eamxx/tests/single-process/ml_correction/ml_correction_standalone.cpp b/components/eamxx/tests/single-process/ml_correction/ml_correction_standalone.cpp
@@ -27,7 +27,7 @@ TEST_CASE("ml_correction-stand-alone", "") {
   const auto  nsteps = ts.get<int>("number_of_steps");
   const auto  t0_str = ts.get<std::string>("run_t0");
   const auto  t0     = util::str_to_time_stamp(t0_str);
-  const auto  ml     = ad_params.sublist("atmosphere_processes").sublist("MLCorrection");
+  const auto  ml     = ad_params.sublist("eamxx").sublist("MLCorrection");
   const auto  ML_model_tq_path = ml.get<std::string>("ml_model_path_tq");
   const auto  ML_model_uv_path = ml.get<std::string>("ml_model_path_uv");
 
diff --git a/components/eamxx/tests/single-process/p3/input.yaml b/components/eamxx/tests/single-process/p3/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [p3]
   p3:
     max_total_ni: 740.0e3
diff --git a/components/eamxx/tests/single-process/rrtmgp/input.yaml b/components/eamxx/tests/single-process/rrtmgp/input.yaml
@@ -10,7 +10,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [rrtmgp]
   rrtmgp:
     column_chunk_size: ${COL_CHUNK_SIZE}
diff --git a/components/eamxx/tests/single-process/rrtmgp/input_unit.yaml b/components/eamxx/tests/single-process/rrtmgp/input_unit.yaml
@@ -3,7 +3,7 @@
 driver_options:
   atmosphere_dag_verbosity_level: 5
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [rrtmgp]
   rrtmgp:
     column_chunk_size: 123
diff --git a/components/eamxx/tests/single-process/shoc/input.yaml b/components/eamxx/tests/single-process/shoc/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [shoc]
   shoc:
     number_of_subcycles: ${NUM_SUBCYCLES}
diff --git a/components/eamxx/tests/single-process/spa/input.yaml b/components/eamxx/tests/single-process/spa/input.yaml
@@ -8,7 +8,7 @@ time_stepping:
   run_t0: ${RUN_T0}  # YYYY-MM-DD-XXXXX
   number_of_steps: ${NUM_STEPS}
 
-atmosphere_processes:
+eamxx:
   atm_procs_list: [spa]
   spa:
     spa_data_file: ${SCREAM_DATA_DIR}/init/spa_file_unified_and_complete_ne2np4L72_20231222.nc
diff --git a/components/eamxx/tests/single-process/surface_coupling/input.yaml b/components/eamxx/tests/single-process/surface_coupling/input.yaml
diff --git a/components/eamxx/tests/single-process/surface_coupling/surface_coupling.cpp b/components/eamxx/tests/single-process/surface_coupling/surface_coupling.cpp
diff --git a/components/eamxx/tests/single-process/zm/input.yaml b/components/eamxx/tests/single-process/zm/input.yaml
