EAMxx: reinstate params and remove glossary

Author: mahf708

.gitignore

@@ -44,7 +44,7 @@ site
 # Ignore mkdocs site-generated files in eamxx
 components/eamxx/site/*
 # Ignore auto-generated eamxx_params.md file
-components/eamxx/docs/common/eamxx_params.md
+components/eamxx/docs/user/eamxx_params.md
 
 # Python packaging
 *.egg-info

components/eamxx/docs/index.md

@@ -4,7 +4,7 @@
 
 EAMxx was designed and built from the ground up employing modern C++ in order to
 embrace leading-edge software practices and enable
-"[performance portability](common/glossary.md#performance-portability)"
+"[performance portability]"
 [^perf-port_def] across various
 leadership-class supercomputers.
 The latter goal is achieved by using the Kokkos library.

components/eamxx/mkdocs.yml

@@ -17,6 +17,7 @@ nav:
     - 'PyEAMxx': 'user/pyeamxx.md'
     - 'IO Metadata': 'user/io_metadata.md'
     - 'Multi-Instance and NBFB': 'user/multi-instance-mvk.md'
+    - 'EAMxx runtime parameters': 'user/eamxx_params.md'
   - 'Developer Guide':
     # - 'Overview': 'developer/index.md'
     - 'Quick-start Guide': 'developer/dev_quickstart.md'
@@ -40,7 +41,7 @@ nav:
   - 'Technical Guide':
     - 'Overview': 'technical/index.md'
     - 'AeroCom cloud top': 'technical/aerocom_cldtop.md'
-  - 'Glossary': 'common/glossary.md'
+  # - 'Glossary': 'common/glossary.md'
 
 edit_uri: ""
 

components/eamxx/scripts/eamxx-params-docs-autogen

@@ -2,7 +2,7 @@
 
 """
 This script parses the file `cime_config/namelist_defaults_eamxx.xml'
-and generates the markdown file `docs/common/eamxx_params.md`,
+and generates the markdown file `docs/user/eamxx_params.md`,
 containing all the runtime parameters that can be configured via calls
 to `atmchange` (in the case folder). For each parameter, we also report
 a doc string and its type, as well as, if present, constraints and valid values.
@@ -91,7 +91,7 @@ def generate_params_docs():
 
     eamxx = pathlib.Path(__file__).parent.parent.resolve()
     xml_defaults_file = eamxx / "cime_config" / "namelist_defaults_eamxx.xml"
-    output_file = eamxx / "docs" / "common" / "eamxx_params.md"
+    output_file = eamxx / "docs" / "user" / "eamxx_params.md"
 
     print("Generating eamxx params documentation...")
     print(f"  output file: {output_file}")