Adds capability to automatically pick the init file and removes init files from testmods

Author: singhbalwinder

components/eamxx/cime_config/namelist_defaults_scream.xml

@@ -37,6 +37,8 @@ be lost if SCREAM_HACK_XML is not enabled.
     <selector name="hgrid" case_env="ATM_GRID"/>
     <selector name="dyn" case_env="CAM_TARGET"/>
     <selector name="nlev" case_env="SCREAM_CMAKE_OPTIONS" regex=".*SCREAM_NUM_VERTICAL_LEV ([0-9]+).*"/>
+    <selector name="ntracers" case_env="SCREAM_CMAKE_OPTIONS" regex=".*SCREAM_NUM_TRACERS ([0-9]+).*"/>
+
   </selectors>
 
   <!-- List of scream grids for a given compset. I/O can only happen on these grids -->
@@ -245,7 +247,7 @@ be lost if SCREAM_HACK_XML is not enabled.
 
     <!-- MAM4xx-Dry Deposition -->
     <mam4_drydep inherit="atm_proc_base">
-    <fractional_land_use_file type="file" doc="File containing Fractional land use data for drydep">${DIN_LOC_ROOT}/atm/scream/mam4xx/drydep/ne4pg2/atmsrf_ne30pg2_c20241017.nc</fractional_land_use_file>
+    <fractional_land_use_file type="file" doc="File containing Fractional land use data for drydep">${DIN_LOC_ROOT}/atm/scream/mam4xx/drydep/ne30pg2/atmsrf_ne30pg2_c20241017.nc</fractional_land_use_file>
     <fractional_land_use_file hgrid="ne4np4.pg2" type="file" doc="File containing Fractional land use data for drydep">${DIN_LOC_ROOT}/atm/scream/mam4xx/drydep/ne4pg2/atmsrf_ne4pg2_c20241017.nc</fractional_land_use_file>
 
     <!-- Mapping Files for finer resolutions -->
@@ -497,8 +499,10 @@ be lost if SCREAM_HACK_XML is not enabled.
   <initial_conditions>
     <Filename type="file">UNSET</Filename>
     <Filename hgrid="ne4np4">${DIN_LOC_ROOT}/atm/scream/init/screami_ne4np4L72_20220823.nc</Filename>
+    <Filename hgrid="ne4np4" ntracers="41">${DIN_LOC_ROOT}/atm/scream/init/screami_mam4xx_ne4np4L72_c20240208.nc</Filename>
     <Filename hgrid="ne30np4" nlev="72">${DIN_LOC_ROOT}/atm/scream/init/screami_ne30np4L72_20220823.nc</Filename>
     <Filename hgrid="ne30np4" nlev="128">${DIN_LOC_ROOT}/atm/scream/init/screami_ne30np4L128_20221004.nc</Filename>
+    <Filename hgrid="ne30np4" nlev="72" ntracers="41">${DIN_LOC_ROOT}/atm/scream/init/screami_mam_ne30np4L72_c20240623.nc</Filename>
     <Filename hgrid="ne120np4" nlev="72">${DIN_LOC_ROOT}/atm/scream/init/screami_ne120np4L72_20220823.nc</Filename>
     <Filename hgrid="ne120np4" nlev="128">${DIN_LOC_ROOT}/atm/scream/init/screami_ne120np4L128_20230215.nc</Filename>
     <Filename hgrid="ne256np4">${DIN_LOC_ROOT}/atm/scream/init/screami_ne256np4L128_ifs-20200120_20220914.nc</Filename>

components/eamxx/cime_config/testdefs/testmods_dirs/scream/mam4xx/aci/shell_commands

@@ -5,9 +5,6 @@
 #------------------------------------------------------
 $CIMEROOT/../components/eamxx/cime_config/testdefs/testmods_dirs/scream/mam4xx/update_eamxx_num_tracers.sh
 
-#modify initial condition file to get aerosol species ICs
-$CIMEROOT/../components/eamxx/scripts/atmchange initial_conditions::Filename='$DIN_LOC_ROOT/atm/scream/init/screami_mam4xx_ne4np4L72_c20240208.nc' -b
-
 # Add spa as RRTMG needs spa
 $CIMEROOT/../components/eamxx/scripts/atmchange physics::atm_procs_list="mac_aero_mic,spa,rrtmgp" -b
 

components/eamxx/cime_config/testdefs/testmods_dirs/scream/mam4xx/drydep/shell_commands

@@ -8,9 +8,8 @@
 $CIMEROOT/../components/eamxx/cime_config/testdefs/testmods_dirs/scream/mam4xx/update_eamxx_num_tracers.sh -b
 
 #------------------------------------------------------
-#Update IC file and add drydep process
+# Add drydep process
 #------------------------------------------------------
-$CIMEROOT/../components/eamxx/scripts/atmchange initial_conditions::Filename='$DIN_LOC_ROOT/atm/scream/init/screami_mam4xx_ne4np4L72_c20240208.nc' -b
 $CIMEROOT/../components/eamxx/scripts/atmchange physics::atm_procs_list="mac_aero_mic,rrtmgp,mam4_drydep" -b
 
 

components/eamxx/cime_config/testdefs/testmods_dirs/scream/mam4xx/optics/shell_commands

@@ -4,7 +4,6 @@
 #------------------------------------------------------
 $CIMEROOT/../components/eamxx/cime_config/testdefs/testmods_dirs/scream/mam4xx/update_eamxx_num_tracers.sh
 
-$CIMEROOT/../components/eamxx/scripts/atmchange initial_conditions::Filename='$DIN_LOC_ROOT/atm/scream/init/screami_mam4xx_ne4np4L72_c20240208.nc' -b
 $CIMEROOT/../components/eamxx/scripts/atmchange physics::atm_procs_list="mac_aero_mic,mam4_optics,rrtmgp" -b
 
 

components/eamxx/cime_config/testdefs/testmods_dirs/scream/mam4xx/srf_online_emiss_constituent_fluxes/shell_commands

@@ -8,9 +8,8 @@
 $CIMEROOT/../components/eamxx/cime_config/testdefs/testmods_dirs/scream/mam4xx/update_eamxx_num_tracers.sh -b
 
 #------------------------------------------------------
-#Update IC file and add the processes
+# Add the processes
 #------------------------------------------------------
-$CIMEROOT/../components/eamxx/scripts/atmchange initial_conditions::Filename='$DIN_LOC_ROOT/atm/scream/init/screami_mam4xx_ne4np4L72_c20240208.nc' -b
 $CIMEROOT/../components/eamxx/scripts/atmchange physics::atm_procs_list="mam4_constituent_fluxes,mac_aero_mic,rrtmgp,mam4_srf_online_emiss" -b
 
 

components/eamxx/cime_config/testdefs/testmods_dirs/scream/mam4xx/wetscav/shell_commands

@@ -7,7 +7,6 @@
 $CIMEROOT/../components/eamxx/cime_config/testdefs/testmods_dirs/scream/mam4xx/update_eamxx_num_tracers.sh -b
 
 #------------------------------------------------------
-#Update IC file and add wetscav process
+# Add wetscav process
 #------------------------------------------------------
-$CIMEROOT/../components/eamxx/scripts/atmchange initial_conditions::Filename='$DIN_LOC_ROOT/atm/scream/init/screami_mam4xx_ne4np4L72_c20240208.nc' -b
 $CIMEROOT/../components/eamxx/scripts/atmchange physics::atm_procs_list="mac_aero_mic,mam4_wetscav,rrtmgp" -b

components/eamxx/src/physics/mam/readfiles/common_file_read_func.hpp

@@ -219,7 +219,6 @@ void srfEmissFunctions<S, D>::update_srfEmiss_data_from_file(
         srfEmiss_horiz_interp.get_tgt_field(i).get_view<const Real *>();
     const auto emiss =
         Kokkos::subview(srfEmiss_input.data.emiss_sectors, i, Kokkos::ALL());
-    printf("BALLI:%i, %i,%i, %i\n",emiss.extent(0),emiss.extent(1),sector.extent(0),sector.extent(1));
     Kokkos::deep_copy(emiss, sector);
   }
 
@@ -282,7 +281,6 @@ void srfEmissFunctions<S, D>::init_srf_emiss_objects(
   SrfEmissData_start = srfEmissInput(ncol, sectors.size());
   SrfEmissData_end   = srfEmissInput(ncol, sectors.size());
   SrfEmissData_out.init(ncol, 1, true);
-  std::cout<<"BALLI-ncol1:"<<ncol<<":"<<SrfEmissData_start.data.emiss_sectors.extent(0)<<std::endl;
 
   // Create reader (an AtmosphereInput object)
   SrfEmissDataReader =