MAM4xx: Fix of mam4_constituent_fluxes_standalone_np1 #2999

odiazib · 2024-09-16T23:11:03Z

This small PR should fix mam4_constituent_fluxes_standalone_np1.

singhbalwinder · 2024-09-16T23:44:43Z

E3SM-Bot · 2024-09-19T19:23:45Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

E3SM-Bot · 2024-09-19T19:23:49Z

Status Flag 'Pre-Test Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
ERROR: LABEL SET BY UNAPPROVED USER 'odiazib', INSPECTION IS INVALID! - This PR must be re-inspected by approved user.

E3SM-Bot · 2024-09-19T19:37:21Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

E3SM-Bot · 2024-09-19T19:37:23Z

Status Flag 'Pre-Test Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
NO INSPECTION HAS BEEN PERFORMED ON THIS PULL REQUEST! - This PR must be inspected by setting label 'AT: PRE-TEST INSPECTED'.

E3SM-Bot · 2024-09-19T19:42:17Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

E3SM-Bot · 2024-09-19T20:36:30Z

Status Flag 'Pre-Test Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED by label AT: PRE-TEST INSPECTED! Autotester is Removing Label; this inspection will remain valid until a new commit to source branch is performed.

E3SM-Bot · 2024-09-19T20:37:18Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Build Num: 6064
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: RETEST;AT: AUTOMERGE;bugfix;EAGLES;MAM
PULLREQUESTNUM	2999
SCREAM_SOURCE_REPO	https://github.com/eagles-project/scream
SCREAM_SOURCE_SHA	`c194ee2`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`25120ff`
TEST_REPO_ALIAS	SCREAM

Using Repos:

Repo: SCREAM (eagles-project/scream)

Pull Request Author: odiazib

E3SM-Bot · 2024-09-19T20:45:19Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Build Num: 6064
Status: FAILED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: RETEST;AT: AUTOMERGE;bugfix;EAGLES;MAM
PULLREQUESTNUM	2999
SCREAM_SOURCE_REPO	https://github.com/eagles-project/scream
SCREAM_SOURCE_SHA	`c194ee2`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`25120ff`
TEST_REPO_ALIAS	SCREAM

SCREAM_PullRequest_Autotester_Weaver # 6064 FAILED (click to see last 100 lines of console output)


Warning: Permanently added the ECDSA host key for IP address '140.82.114.4' to the list of known hosts.
Submodule 'extern/Catch2' (git@github.com:E3SM-Project/Catch2) registered for path 'externals/ekat/extern/Catch2'
Submodule 'extern/kokkos' (git@github.com:E3SM-Project/kokkos) registered for path 'externals/ekat/extern/kokkos'
Submodule 'extern/spdlog' (git@github.com:gabime/spdlog.git) registered for path 'externals/ekat/extern/spdlog'
Submodule 'extern/yaml-cpp' (git@github.com:SNLComputation/yaml-cpp.git) registered for path 'externals/ekat/extern/yaml-cpp'
Cloning into '/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/6064/scream/externals/ekat/extern/Catch2'...
Cloning into '/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/6064/scream/externals/ekat/extern/kokkos'...
Cloning into '/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/6064/scream/externals/ekat/extern/spdlog'...
Cloning into '/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/6064/scream/externals/ekat/extern/yaml-cpp'...
Warning: Permanently added the ECDSA host key for IP address '140.82.113.3' to the list of known hosts.
ERROR: Repository not found.
fatal: Could not read from remote repository.
Please make sure you have the correct access rights

and the repository exists.

fatal: clone of 'git@github.com:SNLComputation/yaml-cpp.git' into submodule path '/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/6064/scream/externals/ekat/extern/yaml-cpp' failed

Failed to clone 'extern/yaml-cpp'. Retry scheduled

Cloning into '/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/6064/scream/externals/ekat/extern/yaml-cpp'...

ERROR: Repository not found.

fatal: Could not read from remote repository.
Please make sure you have the correct access rights

and the repository exists.

fatal: clone of 'git@github.com:SNLComputation/yaml-cpp.git' into submodule path '/home/e3sm-jenkins/weaver/workspace/SCREAM_PullRequest_Autotester_Weaver/6064/scream/externals/ekat/extern/yaml-cpp' failed

Failed to clone 'extern/yaml-cpp' a second time, aborting

Failed to recurse into submodule path 'externals/ekat'
at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.CliGitAPIImpl.launchCommandIn(CliGitAPIImpl.java:2846)
at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.CliGitAPIImpl.launchCommandWithCredentials(CliGitAPIImpl.java:2185)
at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.CliGitAPIImpl$7.lambda$execute$0(CliGitAPIImpl.java:1573)
at Jenkins v2.462.1//com.google.common.util.concurrent.TrustedListenableFutureTask$TrustedFutureInterruptibleTask.runInterruptibly(TrustedListenableFutureTask.java:131)
at Jenkins v2.462.1//com.google.common.util.concurrent.InterruptibleTask.run(InterruptibleTask.java:76)
at Jenkins v2.462.1//com.google.common.util.concurrent.TrustedListenableFutureTask.run(TrustedListenableFutureTask.java:82)
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)
at Jenkins v2.462.1//com.google.common.util.concurrent.DirectExecutorService.execute(DirectExecutorService.java:51)
at java.base/java.util.concurrent.ExecutorCompletionService.submit(ExecutorCompletionService.java:184)
at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.submitRemainingCommand(GitCommandsExecutor.java:77)
at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.invokeAll(GitCommandsExecutor.java:70)

Also:   hudson.remoting.Channel$CallSiteStackTrace: Remote call to weaver

at hudson.remoting.Channel.attachCallSiteStackTrace(Channel.java:1826)

at hudson.remoting.UserRequest$ExceptionResponse.retrieve(UserRequest.java:356)

at hudson.remoting.Channel.call(Channel.java:1042)

at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler.execute(RemoteGitImpl.java:153)

at jdk.internal.reflect.GeneratedMethodAccessor105.invoke(Unknown Source)

at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)

at java.base/java.lang.reflect.Method.invoke(Method.java:569)

at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler.invoke(RemoteGitImpl.java:138)

at PluginClassLoader for git-client/jdk.proxy30/jdk.proxy30.$Proxy100.execute(Unknown Source)

at PluginClassLoader for git//hudson.plugins.git.extensions.impl.SubmoduleOption.onCheckoutCompleted(SubmoduleOption.java:196)

at PluginClassLoader for git//hudson.plugins.git.GitSCM.checkout(GitSCM.java:1388)

at hudson.scm.SCM.checkout(SCM.java:540)

at hudson.model.AbstractProject.checkout(AbstractProject.java:1247)

at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:649)

at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:85)

at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:521)

at hudson.model.Run.execute(Run.java:1894)

at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:44)

at hudson.model.ResourceController.execute(ResourceController.java:101)

at hudson.model.Executor.run(Executor.java:446)

Caused: hudson.plugins.git.GitException

at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.checkResult(GitCommandsExecutor.java:89)

at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.invokeAll(GitCommandsExecutor.java:69)

at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.cgit.GitCommandsExecutor.invokeAll(GitCommandsExecutor.java:47)

at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.CliGitAPIImpl$7.execute(CliGitAPIImpl.java:1576)

at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler$GitCommandMasterToSlaveCallable.call(RemoteGitImpl.java:170)

at PluginClassLoader for git-client//org.jenkinsci.plugins.gitclient.RemoteGitImpl$CommandInvocationHandler$GitCommandMasterToSlaveCallable.call(RemoteGitImpl.java:161)

at hudson.remoting.UserRequest.perform(UserRequest.java:211)

at hudson.remoting.UserRequest.perform(UserRequest.java:54)

at hudson.remoting.Request$2.run(Request.java:377)

at hudson.remoting.InterceptingExecutorService.lambda$wrap$0(InterceptingExecutorService.java:78)

at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264)

at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)

at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)

at java.base/java.lang.Thread.run(Thread.java:829)

Caused: java.io.IOException: Could not perform submodule update

at PluginClassLoader for git//hudson.plugins.git.extensions.impl.SubmoduleOption.onCheckoutCompleted(SubmoduleOption.java:201)

at PluginClassLoader for git//hudson.plugins.git.GitSCM.checkout(GitSCM.java:1388)

at hudson.scm.SCM.checkout(SCM.java:540)

at hudson.model.AbstractProject.checkout(AbstractProject.java:1247)

at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:649)

at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:85)

at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:521)

at hudson.model.Run.execute(Run.java:1894)

at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:44)

at hudson.model.ResourceController.execute(ResourceController.java:101)

at hudson.model.Executor.run(Executor.java:446)

Performing Post build task...

Match found for : : True

Logical operation result is TRUE

Running script  : #!/bin/bash -le
cd $WORKSPACE/${BUILD_ID}/
./scream/components/eamxx/scripts/jenkins/jenkins_cleanup.sh

[SCREAM_PullRequest_Autotester_Weaver] $ /bin/bash -le /tmp/jenkins8116523680157011376.sh

POST BUILD TASK : SUCCESS

END OF POST BUILD TASK : 0

Sending e-mails to: lbertag@sandia.gov

Finished: FAILURE

E3SM-Bot · 2024-09-22T23:11:42Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

E3SM-Bot · 2024-09-22T23:15:22Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Build Num: 6068
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: RETEST;AT: AUTOMERGE;bugfix;AT: PRE-TEST INSPECTED;EAGLES;MAM
PULLREQUESTNUM	2999
SCREAM_SOURCE_REPO	https://github.com/eagles-project/scream
SCREAM_SOURCE_SHA	`c194ee2`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`798bfa6`
TEST_REPO_ALIAS	SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Build Num: 5837
Status: STARTED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: RETEST;AT: AUTOMERGE;bugfix;AT: PRE-TEST INSPECTED;EAGLES;MAM
PULLREQUESTNUM	2999
SCREAM_SOURCE_REPO	https://github.com/eagles-project/scream
SCREAM_SOURCE_SHA	`c194ee2`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`798bfa6`
TEST_REPO_ALIAS	SCREAM

Using Repos:

Repo: SCREAM (eagles-project/scream)

Pull Request Author: odiazib

E3SM-Bot · 2024-09-23T00:26:42Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: SCREAM_PullRequest_Autotester_Weaver

Build Num: 6068
Status: PASSED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: RETEST;AT: AUTOMERGE;bugfix;AT: PRE-TEST INSPECTED;EAGLES;MAM
PULLREQUESTNUM	2999
SCREAM_SOURCE_REPO	https://github.com/eagles-project/scream
SCREAM_SOURCE_SHA	`c194ee2`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`798bfa6`
TEST_REPO_ALIAS	SCREAM

Build Information

Test Name: SCREAM_PullRequest_Autotester_Mappy

Build Num: 5837
Status: PASSED

Jenkins Parameters

Parameter Name	Value
PR_LABELS	AT: RETEST;AT: AUTOMERGE;bugfix;AT: PRE-TEST INSPECTED;EAGLES;MAM
PULLREQUESTNUM	2999
SCREAM_SOURCE_REPO	https://github.com/eagles-project/scream
SCREAM_SOURCE_SHA	`c194ee2`
SCREAM_TARGET_BRANCH	master
SCREAM_TARGET_REPO	https://github.com/E3SM-Project/scream
SCREAM_TARGET_SHA	`798bfa6`
TEST_REPO_ALIAS	SCREAM

Remove member of class from parallel_for.

c194ee2

odiazib requested review from singhbalwinder and AaronDonahue September 16, 2024 23:11

AaronDonahue approved these changes Sep 16, 2024

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AaronDonahue added AT: AUTOMERGE bugfix MAM labels Sep 16, 2024

singhbalwinder approved these changes Sep 16, 2024

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singhbalwinder added EAGLES Work related to the EAGLES aerosol project AT: RETEST labels Sep 17, 2024

odiazib added AT: RETEST and removed AT: RETEST labels Sep 18, 2024

E3SM-Bot removed the AT: PRE-TEST INSPECTED label Sep 19, 2024

mahf708 added the AT: PRE-TEST INSPECTED label Sep 19, 2024

E3SM-Bot removed the AT: PRE-TEST INSPECTED label Sep 19, 2024

E3SM-Bot removed the AT: RETEST label Sep 19, 2024

odiazib added AT: RETEST labels Sep 22, 2024

E3SM-Bot removed the AT: RETEST label Sep 23, 2024

E3SM-Bot merged commit 293cbd5 into E3SM-Project:master Sep 23, 2024
7 checks passed

E3SM-Bot removed the AT: AUTOMERGE label Sep 23, 2024

MAM4xx: Fix of mam4_constituent_fluxes_standalone_np1 #2999

MAM4xx: Fix of mam4_constituent_fluxes_standalone_np1 #2999

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