Adds Interface and Validation Testing for MAM4xx Online Emissions#3083

Merged

bartgol merged 41 commits intomasterfrom

mjs/eamxx/aero_emis_interface

Nov 19, 2024

Commits on Nov 15, 2024

emissions interface--running and calling mam4xx. next diagnose error

mjschmidt271
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singhbalwinder
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cleanup to fix warnings and change path to emissions input files

mjschmidt271
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singhbalwinder
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got online emis. interface working

mjschmidt271
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singhbalwinder
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online emissions interface appears to be working

mjschmidt271
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singhbalwinder
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bump mam4xx submodule, add comments to srf_online_emis_interface

mjschmidt271
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singhbalwinder
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update mam4xx to main

mjschmidt271
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singhbalwinder
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comment out error-inducing code in mam4_amicphys.cpp and small reorg change in online_emission.hpp

mjschmidt271
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singhbalwinder
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Adds sst variable from the ocean model in EAMxx via coupler
singhbalwinder
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Adds dstfluxes (4 values per col) from coupler to eamxx
singhbalwinder
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Adds all input variables for online emissions into the interface cpp
singhbalwinder
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Commits changes in submodule MAM4xx
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EAMxx:Adds soil erodibility file read and sent to online emission read
singhbalwinder
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Changes needed to start validatioon with EAM
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EAMxx: dust emissions matches EAMvs grdi cell
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EAMxx:calculate_seasalt_numflux_in_bins validated
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EAMxx: marine_organic_emis validated with hardwired file read mom
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EAMxx: Partial implementation of marine orgaics file read
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EAMxx:Reading and interpolation of mariane organic file works, not tested yet
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EAMxx: Connects marine organics emiss with MAM4xx codes
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EAMxx:Fixes units for marine organic emissions
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EAMxx: Adds logic to zero out constituent fluxes, cleanup
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EAMxx: Reverts input yaml and CMake, changes cons fluxes to updated
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EAMxx: Some fixes after rebase
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EAMxx:Adds loop to update file read for marine organics, cleanup
singhbalwinder
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fixup! EAMxx: Some fixes after rebase

mjschmidt271
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singhbalwinder
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EAMxx:Fixes file path and specify vector components for dust flux
singhbalwinder
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EAMxx: MAM4xx submodule pointing to main that include GPU fixes
singhbalwinder
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EAMxx: Some codes re-arranged after rebase
singhbalwinder
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EAMxx:Removes accidently added file
singhbalwinder
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update mam4xx submodule to fix gpu compilation error

mjschmidt271
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singhbalwinder
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EAMxx: Fixes a gpu bug requiring a particular format for dstflx
singhbalwinder
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EAMxx: Clang format
singhbalwinder
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EAMxx: Fixed some comments paths and other minor cleanup
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EAMxx: Moves online emiss and constituent init to a new function hpp file
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fix cuda compile warnings

mjschmidt271
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singhbalwinder
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EAMxx:Inits constituent fluxes to zero
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Revert "EAMxx: Clang format"

mjschmidt271
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singhbalwinder
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ff mam4xx to current main

mjschmidt271
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singhbalwinder
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EAMxx: Remove all diffs from microphysics cpp file
singhbalwinder
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Commits on Nov 16, 2024