Fix crash in physics_check_data when registry variable has initial_value but not read from file, yet is modified (intent out) from physics scheme #256
Workflow file for this run
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| name: Fortran Unit Tests | |
| on: | |
| push: | |
| branches: | |
| - development | |
| - main | |
| pull_request: | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref || github.run_id }} | |
| cancel-in-progress: true | |
| jobs: | |
| gcc-toolchain: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| version: [12, 13, 14] | |
| env: | |
| CC: gcc-${{ matrix.version }} | |
| CXX: g++-${{ matrix.version }} | |
| FC: gfortran-${{ matrix.version }} | |
| steps: | |
| - name: install dependencies | |
| run: | | |
| sudo apt install -y libnetcdff-dev libnetcdf-mpi-dev libopenmpi-dev openmpi-bin doxygen | |
| - name: Checkout cam-sima | |
| uses: actions/checkout@v4 | |
| - name: Build pFUnit | |
| run: | | |
| git clone --depth 1 --branch v4.10.0 https://github.com/Goddard-Fortran-Ecosystem/pFUnit.git | |
| cd pFUnit | |
| cmake -B./build -S. | |
| cd build | |
| make install | |
| - name: Build PIO | |
| run: | | |
| git clone --depth 1 --branch pio2_6_6 https://github.com/NCAR/ParallelIO.git | |
| cd ParallelIO | |
| FC=$(which mpif90) \ | |
| CC=$(which mpicc) \ | |
| cmake -S./ -B./build \ | |
| -DCMAKE_INSTALL_PREFIX=./install \ | |
| -DPIO_ENABLE_TIMING=OFF \ | |
| -DWITH_PNETCDF=OFF \ | |
| -DCMAKE_PREFIX_PATH="/usr/lib/x86_64-linux-gnu/cmake/netCDF" \ | |
| -DNetCDF_Fortran_LIBRARY="/usr/lib/x86_64-linux-gnu/libnetcdff.a" \ | |
| -DNetCDF_C_LIBRARY="/usr/lib/x86_64-linux-gnu/libnetcdf.so" \ | |
| -DCMAKE_EXE_LINKER_FLAGS="-lmpi -Wl,--no-as-needed" | |
| cd build | |
| make | |
| make install | |
| - name: Checkout atmospheric_physics | |
| run: | | |
| bin/git-fleximod update ncar-physics ccpp-framework share | |
| - name: Build cam-sima | |
| run: | | |
| PIO_ROOT=$GITHUB_WORKSPACE/ParallelIO/install/ \ | |
| cmake \ | |
| -DCMAKE_PREFIX_PATH="$GITHUB_WORKSPACE/pFUnit/build/installed;/usr/lib/x86_64-linux-gnu/cmake/netCDF;/usr/lib/x86_64-linux-gnu/" \ | |
| -DCAM_SIMA_ENABLE_CODE_COVERAGE=ON \ | |
| -DCAM_SIMA_ENABLE_IO_TESTS=ON \ | |
| -DCAM_SIMA_ENABLE_TESTS=ON \ | |
| -B./build \ | |
| -S./test/unit/fortran | |
| cd build | |
| make | |
| - name: Checkout datafiles for file IO reader tests | |
| run: | | |
| git clone https://github.com/earth-system-radiation/rrtmgp-data.git | |
| - name: Run fortran unit tests | |
| run: | | |
| cd build && ctest -V --output-on-failure --output-junit test_results.xml | |
| - name: Upload unit test results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: unit-test-results-${{ env.FC }} | |
| path: build/test_results.xml | |
| - name: Setup Gcov | |
| run: | | |
| python3 -m venv venv | |
| source venv/bin/activate | |
| pip3 install gcovr | |
| - name: Run Gcov | |
| run: | | |
| source venv/bin/activate | |
| cd build | |
| gcovr --gcov-executable gcov-${{ matrix.version }} -r .. --filter '\.\./src' --html cam_sima_code_coverage.html --txt | |
| - name: Upload code coverage results | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: code-coverage-results-${{ env.FC }} | |
| path: build/cam_sima_code_coverage.html |