Skip to content

Commit 19bde03

Browse files
committed
Update README with Running on AIDE section
1 parent 917b193 commit 19bde03

File tree

1 file changed

+11
-0
lines changed

1 file changed

+11
-0
lines changed

README.md

Lines changed: 11 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -111,3 +111,14 @@ Note: two containers are present under GitHub Packages:
111111

112112
The `map` version is for general usage and deployment. The `map-init` version is for developers who wish to build the
113113
MAP from scratch as part of the two-step build process described above.
114+
115+
## Running on AIDE
116+
To run TotalSegmentator on AIDE, two files from the `app/workflows` directory are required, namely:
117+
- `totalsegmentator.json` – AIDE Clinical Workflow file.
118+
- Effectively a sequence of tasks run on AIDE
119+
- `totalsegmentator-argo-template.yaml` – Argo Workflow Template file.
120+
- Called by the AIDE Clinical Workflow file. Executes the Totalsegmentator-AIDE MAP using Argo. This is the central
121+
task within the AIDE Clinical Workflow file.
122+
123+
The `app/workflows` directory also contains four illustrative Argo Workflow Templates depending on system performance.
124+
`low`, `medium`, `high` and `dgx` examples are provided with different CPU and RAM settings.

0 commit comments

Comments
 (0)