Infer STIM coordinate from populations

Author: frthjf

src/miv_simulator/interface/neuroh5_graph.py

@@ -63,15 +63,14 @@ def __call__(self) -> None:
         self.graph.import_h5types(self.architecture.config.filepath)
         self.graph.import_soma_coordinates(
             self.architecture.config.filepath,
-            populations=list(populations),
+            populations=read_population_names(self.architecture.config.filepath),
         )
         for p in self.synapse_forest.keys():
             self.graph.import_synapse_attributes(
                 p,
                 self.synapse_forest[p].output_filepath,
                 self.synapses[p].output_filepath,
             )
-        self.graph.copy_stim_coordinates()
 
         for p, c in self.connections.items():
             self.graph.import_projections(p, c.output_filepath)

src/miv_simulator/utils/io.py

@@ -1177,12 +1177,3 @@ def import_projections(self, population: str, src: str):
                 f_dst.create_group("Projections")
             with h5py.File(src, "r") as f_src:
                 copy_dataset(f_src, f_dst, projection_dset_path)
-
-    def copy_stim_coordinates(self):
-        with h5py.File(self.cells_filepath, "a") as f:
-            if "/Populations/STIM" not in f:
-                return
-            f.copy(
-                "/Populations/STIM/Generated Coordinates",
-                "/Populations/STIM/Coordinates",
-            )