Differential Expression Analysis page

[AgentKumara]

Data set reminder section:

• Do you want the slides to now link to your supplementary materials page?

All sections, in the R code, some parts use = and others <-

• fcData = read.table('yeast_counts_all_chr.txt', sep='\t', header=TRUE)

• names(fcData)[7:12] = c("WT1", "WT2", "WT3", "MT1", "MT2", "MT3")

• counts = fcData[, 7:12]

• rownames(counts) = fcData$Geneid

• logCounts = log2(as.matrix(counts)+ 0.5)

• geneLengths = getlength(rownames(counts), "sacCer2","ensGene")

• sigGenes = which(tt$adj.P.Val <= 0.05)

• sigGenes = which(tt$adj.P.Val <= 0.05 & (abs(tt$logFC) > log2(2)))

• res = na.omit(res)

• Is it possible to change the <= symbols in the code blocks to what you would actually type? It currently looks like a MS Word-formatted symbol.

• Is it possible to change the <- symbols in the code blocks to look less like a pretty arrow?

[DininduSenanayake]

Thanks @AgentKumara

Referring this to @MattBixley @tylermcinnes for a review

[DininduSenanayake]

Is it possible to change the <= symbols in the code blocks to what you would actually type? It currently looks like a MS Word-formatted symbol. ☑️

Is it possible to change the <- symbols in the code blocks to look less like a pretty arrow? ☑️

Above was a result of using "Fira code" font for code blocks. I have have changed it to default "Roberto Mono"