⬆️ conda

Author: GiulioRossetti

.github/workflows/build_and_upload_pypi.yml

@@ -0,0 +1,40 @@
+# This workflow will upload a Python Package using Twine when a release is created
+# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
+
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+name: Upload Python Package
+
+on:
+  release:
+    types: [published]
+  #workflow_dispatch:
+  
+jobs:
+  deploy:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.x'
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install build
+    
+    - name: Build package
+      run: python -m build
+        
+    - name: Publish distribution 📦 to PyPI
+      if: startsWith(github.ref, 'refs/tags')
+      uses: pypa/gh-action-pypi-publish@master
+      with:
+        user: __token__
+        password: ${{ secrets.PYPI_API_TOKEN }}

.github/workflows/publish.yml

@@ -0,0 +1,20 @@
+name: publish_conda
+
+on:
+  release:
+    types: [published]
+  #workflow_dispatch: # on demand
+    
+jobs:
+  publish:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v1
+    - name: publish-to-conda
+      uses: GiulioRossetti/conda-package-publish-action@v1.1.0
+      with:
+        subdir: 'conda'
+        AnacondaToken: ${{ secrets.ANACONDA_TOKEN }}
+        platforms: 'all'
+        override: true
+        # dry_run: true

.github/workflows/python-package-conda.yml

@@ -0,0 +1,34 @@
+name: Python Package using Conda
+
+on: [push]
+
+jobs:
+  build-linux:
+    runs-on: ubuntu-latest
+    strategy:
+      max-parallel: 5
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python 3.8
+      uses: actions/setup-python@v2
+      with:
+        python-version: 3.8
+    - name: Add conda to system path
+      run: |
+        # $CONDA is an environment variable pointing to the root of the miniconda directory
+        echo $CONDA/bin >> $GITHUB_PATH
+    - name: Install dependencies
+      run: |
+        conda env update --file environment.yml --name base
+    - name: Lint with flake8
+      run: |
+        conda install flake8
+        # stop the build if there are Python syntax errors or undefined names
+        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+    - name: Test with pytest
+      run: |
+        conda install pytest
+        pytest

.github/workflows/test_ubuntu.yml

@@ -0,0 +1,51 @@
+# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+
+name: Test and Coverage (Ubuntu)
+
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: [3.7, 3.8, 3.9]
+
+    steps:
+    - uses: actions/checkout@v2
+    - uses: conda-incubator/setup-miniconda@v2
+      with:
+        auto-update-conda: true
+        python-version: ${{ matrix.python-version }}
+
+
+    - name: Install pip dependencies
+      run: |
+
+        python -m pip install --upgrade pip
+        pip install .
+        pip install -r requirements.txt
+        python -m pip install flake8 pytest
+        pip install pytest pytest-cov
+        pip install coveralls
+
+    - name: Lint with flake8
+      run: |
+        # stop the build if there are Python syntax errors or undefined names
+        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+        # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
+        flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
+
+    - name: Test with pytest
+      run: |
+        pytest --cov-config=.coveragerc --cov=./ --cov-report=xml
+
+    - name: codecov
+      uses: codecov/codecov-action@v1

conda/build.sh

@@ -0,0 +1 @@
+$PYTHON setup.py install --single-version-externally-managed --record=record.txt

conda/conda_build_config.yaml

@@ -0,0 +1,4 @@
+python:
+- 3.7
+- 3.8
+- 3.9

conda/meta.yaml

@@ -0,0 +1,32 @@
+package:
+  name: "nf1"
+  version: "0.0.4"
+
+source:
+  git_rev: v0.0.4
+  git_url: https://github.com/GiulioRossetti/f1-communities
+
+requirements:
+  host:
+    - python
+    - setuptools
+  build:
+    - python
+    - setuptools
+  run:
+    - python>=3.7
+    - numpy
+    - matplotlib
+    - scipy
+    - pandas
+
+about:
+  home: https://github.com/GiulioRossetti/f1-communities
+  license: BSD-2-Clause
+  license_familY: BSD
+  license_file: LICENSE
+  summary: "NF1 - Normalized F1 score for community evaluation against ground truth"
+
+extra:
+  recipe-maintainers:
+    - GiulioRossetti

environment.yml

@@ -0,0 +1,10 @@
+name: angel_env
+channels:
+- conda-forge
+- defaults
+dependencies:
+- python>=3.7
+- numpy
+- matplotlib
+- scipy
+- pandas

requirements.txt

@@ -1,5 +1,4 @@
 numpy
 matplotlib
 scipy
-pandas
-pytest==5.1.*
+pandas

setup.py

@@ -14,7 +14,7 @@
 
 
 setup(name='nf1',
-      version='0.0.3',
+      version='0.0.4',
       license='BSD-Clause-2',
       description='NF1: Normalized F1 score for community evaluation against ground truth',
       url='https://github.com/GiulioRossetti/f1-communities',