Update Pandas #86

	name: CI

	on:
	push:
	branches:
	- master
	pull_request:
	branches:
	- master

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: [3.11]

	steps:
	- uses: actions/checkout@v3
	with:
	fetch-depth: 1

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install htslib dependencies
	run: sudo apt-get update && sudo apt-get install -y libcurl4-openssl-dev

	- name: Install Poetry
	run: \|
	curl -sSL https://install.python-poetry.org \| python3 -
	echo "$HOME/.local/bin" >> $GITHUB_PATH

	- name: Cache poetry virtualenv
	uses: actions/cache@v4
	with:
	path: .venv
	key: venv-${{ runner.os }}-py${{ matrix.python-version }}-${{ hashFiles('**/poetry.lock') }}
	restore-keys: \|
	venv-${{ runner.os }}-py${{ matrix.python-version }}-

	- name: Install dependencies
	run: poetry install --no-interaction --no-root

	- name: Install library
	run: poetry install --no-interaction

	- name: Code Quality
	run: poetry run black . --check

	- name: Test with pytest
	run: poetry run pytest -n 2 --cov . --cov-report=xml

	# - name: Upload coverage to Codecov
	# uses: codecov/codecov-action@v4
	# with:
	# file: ./coverage.xml
	# flags: unittests
	# env_vars: OS,PYTHON
	# name: codecov-umbrella
	# fail_ci_if_error: true

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