RC 1.5.5: Fixes to get rid of easystats warnings (#286)

* add citation template

* Update pkgdown.yaml

* adapt to easystats changes

* update parameters version

* use stricter options

* use more citation template

* use latest effectsize

* Update .Rbuildignore

* bump metaplus

* bump to latest CRAN version of metaplus

* turn off partial matching of args

* update news

* bump version

* fix CRAN check issue

* Apply automatic changes

* Update WORDLIST

* fox style workflow issue

---------

Co-authored-by: IndrajeetPatil <IndrajeetPatil@users.noreply.github.com>

Author: IndrajeetPatil

.Rbuildignore

@@ -42,6 +42,7 @@
 ^doc$
 ^docs$
 ^gitsum$
+^man-roxygen$
 ^paper.*$
 ^pkgdown$
 ^revdep$

.github/workflows/check-all-examples.yaml

@@ -44,6 +44,12 @@ jobs:
 
       - name: Run examples
         run: |
-          options(crayon.enabled = TRUE, warn = 2L)
+          options(
+            crayon.enabled = TRUE,
+            # warnPartialMatchArgs = TRUE,
+            # warnPartialMatchAttr = TRUE,
+            # warnPartialMatchDollar = TRUE,
+            warn = 2L
+          )
           devtools::run_examples(run_dontrun = TRUE, run_donttest = TRUE, document = FALSE)
         shell: Rscript {0}

.github/workflows/check-readme.yaml

@@ -54,6 +54,12 @@ jobs:
 
       - name: Render README
         run: |
-          options(crayon.enabled = TRUE, warn = 2L)
+          options(
+            crayon.enabled = TRUE,
+            # warnPartialMatchArgs = TRUE,
+            # warnPartialMatchAttr = TRUE,
+            # warnPartialMatchDollar = TRUE,
+            warn = 2L
+          )
           rmarkdown::render("README.Rmd")
         shell: Rscript {0}

.github/workflows/check-vignette-warnings.yaml

@@ -38,7 +38,13 @@ jobs:
 
       - name: Build vignettes
         run: |
-          options(crayon.enabled = TRUE, warn = 2L)
+          options(
+            crayon.enabled = TRUE,
+            # warnPartialMatchArgs = TRUE,
+            # warnPartialMatchAttr = TRUE,
+            # warnPartialMatchDollar = TRUE,
+            warn = 2L
+          )
           vignettes <- fs::dir_ls("vignettes/", glob = "*.Rmd", recurse = TRUE)
           purrr::walk(vignettes, rmarkdown::render)
         shell: Rscript {0}

.github/workflows/pkgdown.yaml

@@ -36,7 +36,6 @@ jobs:
           pak-version: devel
           upgrade: "TRUE"
           extra-packages: |
-            r-lib/evaluate
             r-lib/pkgdown
             local::.
           needs: website

.github/workflows/styler.yaml

@@ -33,6 +33,7 @@ jobs:
             any::roxygen2
             anthonynorth/roxyglobals
           needs: |
+            metaplus
             styler
             roxygen2
 
@@ -66,7 +67,7 @@ jobs:
       - name: Style package
         run: |
           options(crayon.enabled = TRUE)
-          styler::style_pkg(filetype = c(".qmd", ".R", ".Rmd", ".Rmarkdown", ".Rnw"))
+          styler::style_pkg()
         shell: Rscript {0}
 
       - name: Document

CITATION.cff

@@ -8,7 +8,7 @@ message: 'To cite package "statsExpressions" in publications use:'
 type: software
 license: MIT
 title: 'statsExpressions: Tidy Dataframes and Expressions with Statistical Details'
-version: 1.5.4.9000
+version: 1.5.5
 doi: 10.21105/joss.03236
 abstract: 'Utilities for producing dataframes with rich details for the most common
   types of statistical approaches and tests: parametric, nonparametric, robust, and
@@ -32,7 +32,6 @@ preferred-citation:
     email: patilindrajeet.science@gmail.com
     orcid: https://orcid.org/0000-0003-1995-6531
   doi: 10.21105/joss.03236
-  url: https://doi.org/10.21105/joss.03236
   year: '2021'
   publisher:
     name: The Open Journal
@@ -206,7 +205,7 @@ references:
   abstract: 'effectsize: Indices of Effect Size'
   notes: Imports
   url: https://easystats.github.io/effectsize/
-  repository: https://easystats.r-universe.dev
+  repository: https://CRAN.R-project.org/package=effectsize
   authors:
   - family-names: Ben-Shachar
     given-names: Mattan S.
@@ -237,7 +236,7 @@ references:
     email: philip.waggoner@gmail.com
     orcid: https://orcid.org/0000-0002-7825-7573
   year: '2024'
-  version: '>= 0.8.8'
+  version: '>= 0.8.9'
 - type: software
   title: glue
   abstract: 'glue: Interpreted String Literals'
@@ -315,7 +314,7 @@ references:
   abstract: 'parameters: Processing of Model Parameters'
   notes: Imports
   url: https://easystats.github.io/parameters/
-  repository: https://easystats.r-universe.dev
+  repository: https://CRAN.R-project.org/package=parameters
   authors:
   - family-names: Lüdecke
     given-names: Daniel
@@ -341,7 +340,7 @@ references:
     email: brenton@wiernik.org
     orcid: https://orcid.org/0000-0001-9560-6336
   year: '2024'
-  version: '>= 0.21.7'
+  version: '>= 0.22.0'
 - type: software
   title: performance
   abstract: 'performance: Assessment of Regression Models Performance'
@@ -641,12 +640,13 @@ references:
   authors:
   - family-names: Beath
     given-names: Ken
-    email: ken@kjbeath.com.au
+    email: ken@kjbeath.id.au
   - family-names: Bolker
     given-names: Ben
     email: bolker@mcmaster.ca
   - name: R Development Core Team
   year: '2024'
+  version: '>= 1.0-5'
 - type: software
   title: rmarkdown
   abstract: 'rmarkdown: Dynamic Documents for R'

DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: statsExpressions
 Title: Tidy Dataframes and Expressions with Statistical Details
-Version: 1.5.4.9000
+Version: 1.5.5
 Authors@R: 
     person("Indrajeet", "Patil", , "patilindrajeet.science@gmail.com", role = c("cre", "aut", "cph"),
            comment = c(ORCID = "0000-0003-1995-6531", Twitter = "@patilindrajeets"))
@@ -27,11 +27,11 @@ Imports:
     correlation (>= 0.8.5),
     datawizard (>= 0.11.0),
     dplyr (>= 1.1.4),
-    effectsize (>= 0.8.8),
+    effectsize (>= 0.8.9),
     glue (>= 1.7.0),
     insight (>= 0.20.1),
     magrittr (>= 2.0.3),
-    parameters (>= 0.21.7),
+    parameters (>= 0.22.0),
     performance (>= 0.12.0),
     PMCMRplus (>= 1.9.10),
     purrr (>= 1.0.2),
@@ -48,7 +48,7 @@ Suggests:
     knitr,
     metaBMA,
     metafor,
-    metaplus,
+    metaplus (>= 1.0-5),
     rmarkdown,
     rstantools,
     survival,
@@ -62,8 +62,6 @@ Config/testthat/parallel: true
 Encoding: UTF-8
 Language: en-US
 LazyData: true
-Roxygen: list(
-    markdown = TRUE,
-    roclets = c("collate", "namespace", "rd", "pkgapi::api_roclet", "roxyglobals::global_roclet")
-  )
-RoxygenNote: 7.3.1
+Roxygen: list( markdown = TRUE, roclets = c("collate", "namespace", "rd",
+    "pkgapi::api_roclet", "roxyglobals::global_roclet") )
+RoxygenNote: 7.3.2

NEWS.md

@@ -1,9 +1,13 @@
-# statsExpressions 1.5.4.9000
+# statsExpressions 1.5.5
 
 ## MAJOR CHANGES
 
 - The package licence has been updated to an MIT license.
 
+## MINOR CHANGES
+
+- Updates code to fix warnings coming via updates to easystats packages.
+
 # statsExpressions 1.5.4
 
 ## MAJOR CHANGES

R/add-expression-col.R

@@ -70,6 +70,9 @@
 #'   digits         = 3L,
 #'   digits.df      = 3L
 #' )
+#'
+#' @template citation
+#'
 #' @export
 add_expression_col <- function(
     data,