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CI: Use Netlify for notebooks tests #97

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44762d2
'CI:Use_Netlify_for_notebooks_tests'
Jan 5, 2021
5b3c4d5
BUG:Same_virtual_env_in_all_notebooks
Jan 14, 2021
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17 changes: 0 additions & 17 deletions .github/workflows/notebook-test.yml
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25 changes: 25 additions & 0 deletions .github/workflows/notebooks-test.yml
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@@ -0,0 +1,25 @@
name: Notebooks tests

on: [push, pull_request]

jobs:
test-elastix:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set Up Python
uses: actions/setup-python@v2
with:
python-version: 3.7
- run: |
cd examples
pip install -r requirements.txt
pip install pytest-tornasync
python -m ipykernel install --user --name elastixenv
pip install pytest 'nbmake[html]'
- run: |
pytest --nbmake --path-output=.
# - if: failure()
- run: |
netlify deploy --dir=_build/html --auth=${{ secrets.NETLIFY_TOKEN }} --site=${{ secrets.NETLIFY_SITE_API_ID }}

6 changes: 3 additions & 3 deletions examples/ITK_Example10_Transformix_Jacobian.ipynb
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Expand Up @@ -186,9 +186,9 @@
],
"metadata": {
"kernelspec": {
"display_name": "ElastixEnv2",
"display_name": "ElastixEnv",
"language": "python",
"name": "elastixenv2"
"name": "elastixenv"
},
"language_info": {
"codemirror_mode": {
Expand All @@ -200,7 +200,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.9"
"version": "3.8.5"
}
},
"nbformat": 4,
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6 changes: 3 additions & 3 deletions examples/ITK_Example11_Transformix_DeformationField.ipynb
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Expand Up @@ -265,9 +265,9 @@
],
"metadata": {
"kernelspec": {
"display_name": "ElastixEnv2",
"display_name": "ElastixEnv",
"language": "python",
"name": "elastixenv2"
"name": "elastixenv"
},
"language_info": {
"codemirror_mode": {
Expand All @@ -279,7 +279,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.9"
"version": "3.8.5"
}
},
"nbformat": 4,
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6 changes: 3 additions & 3 deletions examples/ITK_UnitTestExample1_RigidRegistration.ipynb
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Expand Up @@ -121,9 +121,9 @@
],
"metadata": {
"kernelspec": {
"display_name": "ITKTestEnvDebug",
"display_name": "ElastixEnv",
"language": "python",
"name": "itktestenvdebug"
"name": "elastixenv"
},
"language_info": {
"codemirror_mode": {
Expand All @@ -135,7 +135,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.9"
"version": "3.8.5"
}
},
"nbformat": 4,
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6 changes: 3 additions & 3 deletions examples/ITK_UnitTestExample2_AffineRegistration.ipynb
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Expand Up @@ -122,9 +122,9 @@
],
"metadata": {
"kernelspec": {
"display_name": "ITKTestEnvDebug",
"display_name": "ElastixEnv",
"language": "python",
"name": "itktestenvdebug"
"name": "elastixenv"
},
"language_info": {
"codemirror_mode": {
Expand All @@ -136,7 +136,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.9"
"version": "3.8.5"
}
},
"nbformat": 4,
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6 changes: 3 additions & 3 deletions examples/ITK_UnitTestExample6_PointSetTransformation.ipynb
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Expand Up @@ -162,9 +162,9 @@
],
"metadata": {
"kernelspec": {
"display_name": "ITKTestEnvDebug",
"display_name": "ElastixEnv",
"language": "python",
"name": "itktestenvdebug"
"name": "elastixenv"
},
"language_info": {
"codemirror_mode": {
Expand All @@ -176,7 +176,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.9"
"version": "3.8.5"
}
},
"nbformat": 4,
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11 changes: 6 additions & 5 deletions examples/requirements.txt
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@@ -1,4 +1,4 @@
itk-elastix>=0.7.0
itk-elastix>=0.8.0
itk==5.1.1.post1
itk-core==5.1.1.post1
itk-numerics==5.1.1.post1
Expand All @@ -7,8 +7,9 @@ itk-registration==5.1.1.post1
itk-segmentation==5.1.1.post1
itkwidgets>=0.32.0
jupyterlab==1.2.5
imageio
imageio>=2.5.0
ipywidgets>=7.5.1
ipympl>=0.4.1
voila>=0.1.21
pyinstaller
ipympl==0.5.7
voila>=0.2.3
pyinstaller>=4.0
sphinxcontrib-bibtex==1.0.0