Update dependencies and CI (#158)

* Update dependencies

* Update manifest files

* Update CI

* Fix documentation by reexporting `discretemeasure`

* Try to fix test error by weaker tolerance

* Simplify CI

Author: devmotion

.github/workflows/CI.yml

@@ -6,6 +6,12 @@ on:
       - master
   pull_request:
 
+concurrency:
+  # Skip intermediate builds: always.
+  # Cancel intermediate builds: only if it is a pull request build.
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
+
 jobs:
   test:
     name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
@@ -22,20 +28,13 @@ jobs:
           - windows-latest
         arch:
           - x64
-        include:
-          - version: '1'
-            os: ubuntu-latest
-            arch: x64
-            coverage: true
     steps:
       - uses: actions/checkout@v2
       - name: Install python
         uses: actions/setup-python@v2
         with:
           python-version: '3.9'
           architecture: ${{ matrix.arch }}
-      # Limitation of pip: https://pythonot.github.io/index.html#pip-installation
-      - run: python -m pip install cython numpy
       - run: python -m pip install pot
       - uses: julia-actions/setup-julia@v1
         with:
@@ -54,18 +53,18 @@ jobs:
       - uses: julia-actions/julia-buildpkg@latest
       - uses: julia-actions/julia-runtest@latest
         with:
-          coverage: ${{ matrix.coverage || false }}
+          coverage: ${{ matrix.version == '1' && matrix.os == 'ubuntu-latest' }}
         env:
           PYTHON: python
           GROUP: OptimalTransport
       - uses: julia-actions/julia-processcoverage@v1
-        if: matrix.coverage
-      - uses: codecov/codecov-action@v1
-        if: matrix.coverage
+        if: matrix.version == '1' && matrix.os == 'ubuntu-latest'
+      - uses: codecov/codecov-action@v2
+        if: matrix.version == '1' && matrix.os == 'ubuntu-latest'
         with:
           file: lcov.info
       - uses: coverallsapp/github-action@master
-        if: matrix.coverage
+        if: matrix.version == '1' && matrix.os == 'ubuntu-latest'
         with:
           github-token: ${{ secrets.GITHUB_TOKEN }}
           path-to-lcov: lcov.info

.github/workflows/Documentation.yml

@@ -7,6 +7,12 @@ on:
     tags: '*'
   pull_request:
 
+concurrency:
+  # Skip intermediate builds: always.
+  # Cancel intermediate builds: only if it is a pull request build.
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: ${{ startsWith(github.ref, 'refs/pull/') }}
+
 jobs:
   build:
     runs-on: ubuntu-latest
@@ -17,8 +23,6 @@ jobs:
         with:
           python-version: '3.9'
           architecture: ${{ matrix.arch }}
-      # Limitation of pip: https://pythonot.github.io/index.html#pip-installation
-      - run: python -m pip install cython numpy
       - run: python -m pip install pot
       - uses: julia-actions/setup-julia@latest
         with:

Project.toml

@@ -1,7 +1,7 @@
 name = "OptimalTransport"
 uuid = "7e02d93a-ae51-4f58-b602-d97af76e3b33"
 authors = ["zsteve <stephenz@student.unimelb.edu.au>"]
-version = "0.3.17"
+version = "0.3.18"
 
 [deps]
 ExactOptimalTransport = "24df6009-d856-477c-ac5c-91f668376b31"
@@ -12,7 +12,7 @@ NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd"
 Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
 
 [compat]
-ExactOptimalTransport = "0.1"
+ExactOptimalTransport = "0.1, 0.2"
 IterativeSolvers = "0.8.4, 0.9"
 LogExpFunctions = "0.2, 0.3"
 NNlib = "0.6, 0.7"