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Bugfix for petsc-parallel output. #42

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Merged
merged 1 commit into from
Apr 7, 2025
Merged

Bugfix for petsc-parallel output. #42

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13 changes: 7 additions & 6 deletions src/output.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -201,24 +201,25 @@ void Output::writeDataFiles(int timestep, double time, const Vec state, MasterEq
/* Write output only every <num> time-steps */
if (timestep % output_frequency == 0) {


/* Write expected energy levels to file */
for (size_t iosc = 0; iosc < expectedfile.size(); iosc++) {
double expected = mastereq->getOscillator(iosc)->expectedEnergy(state);
if (expectedfile[iosc] != NULL) {
double expected = mastereq->getOscillator(iosc)->expectedEnergy(state);
fprintf(expectedfile[iosc], "%.8f %1.14e\n", time, expected);
}
}

double expected_comp = mastereq->expectedEnergy(state);
if (expectedfile_comp != NULL) {
double expected_comp = mastereq->expectedEnergy(state);
fprintf(expectedfile_comp, "%.8f %1.14e\n", time, expected_comp);
}

/* Write population to file */
for (size_t iosc = 0; iosc < populationfile.size(); iosc++) {
std::vector<double> pop (mastereq->getOscillator(iosc)->getNLevels(), 0.0);
mastereq->getOscillator(iosc)->population(state, pop);
if (populationfile[iosc] != NULL) {
std::vector<double> pop (mastereq->getOscillator(iosc)->getNLevels(), 0.0);
mastereq->getOscillator(iosc)->population(state, pop);
fprintf(populationfile[iosc], "%.8f ", time);
for (size_t i = 0; i<pop.size(); i++) {
fprintf(populationfile[iosc], " %1.14e", pop[i]);
Expand All @@ -227,9 +228,9 @@ void Output::writeDataFiles(int timestep, double time, const Vec state, MasterEq
}
}

std::vector<double> population_comp;
mastereq->population(state, population_comp);
if (populationfile_comp != NULL) {
std::vector<double> population_comp;
mastereq->population(state, population_comp);
fprintf(populationfile_comp, "%.8f ", time);
for (size_t i=0; i<population_comp.size(); i++){
fprintf(populationfile_comp, "%1.14e ", population_comp[i]);
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