Update default ARKODE methods #547
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…ully fixes inconsistent CI test results
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I think this is ready to merge unless someone would like to re-review |
It's been a while since I looked over this so I'll take another pass |
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Update outputs for LLNL/sundials#547 --------- Co-authored-by: David J. Gardner <gardner48@llnl.gov>
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Update the default RK tables in ARKODE: - ARK order >2: Follows the recommendations in the conclusion of https://doi.org/10.1016/j.apnum.2018.10.007 - ERK order 4: Improved principal error and embedded quality metrics - ERK order 5: Improved principal error and embedded quality metrics - ERK order 8: Switch to a method designed for local extrapolation mode, likely better principal error. - DIRK order 2: Improved principal error, L-stability, and stage order 2 - DIRK order >2: Follows the recommendations in the conclusion of https://doi.org/10.1016/j.apnum.2019.07.008 --------- Co-authored-by: David Gardner <gardner48@llnl.gov>
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commit a5ebc2c5a549e338ba2958e1560b6ee2b3d0551c
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Aug 27 16:21:23 2025 -0700
restore develop .github/workflows
commit 6515791f106e7ce03705e0915152f71622453ae4
Merge: 66bfd6b80 5af77e3a2
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Jul 22 11:26:40 2025 -0500
Merge branch 'develop' into feature/ginkgo-batched
commit 66bfd6b804787f70519af99bf13377c73553a7fd
Merge: fc6bc9870 7df148da3
Author: David J. Gardner <gardner48@llnl.gov>
Date: Mon Jul 21 17:48:53 2025 -0500
Merge branch 'develop' into feature/ginkgo-batched
Conflicts:
.github/workflows/check-format.yml
.github/workflows/check-spelling.yml
.github/workflows/check-swig.yml
.gitlab/jobs/dane.yml
.gitlab/jobs/tioga.yml
CHANGELOG.md
cmake/tpl/SundialsGinkgo.cmake
doc/shared/RecentChanges.rst
doc/shared/sundials_vars.py
doc/superbuild/source/developers/getting_started/UsefulUtilities.rst
src/arkode/arkode_forcingstep.c
src/arkode/arkode_lsrkstep_io.c
src/arkode/arkode_splittingstep.c
src/arkode/arkode_splittingstep_coefficients.c
src/arkode/arkode_sprkstep_io.c
src/sunadjointcheckpointscheme/fixed/sunadjointcheckpointscheme_fixed.c
src/sundials/sundatanode/sundatanode_inmem.c
src/sundials/sundatanode/sundatanode_inmem.h
src/sundials/sundials_hashmap_impl.h
src/sundials/sundials_logger.c
src/sundials/sundials_logger_impl.h
test/unit_tests/sundials/test_sundials_hashmap.cpp
test/unit_tests/sunlinsol/ginkgo/CMakeLists.txt
commit fc6bc98703bb7659035aa7cfd7b0f7b0697d8dda
Author: David J. Gardner <gardner48@llnl.gov>
Date: Fri Jul 11 09:04:48 2025 -0700
fix SUNStrToReal usage
commit 7dae6921c7b52f9771db0927db5fefa69b77448e
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 10 22:19:38 2025 -0700
use SUNStrToReal
commit 7ff5d7ebe8d767b3424153c3833e95808a56c7b3
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 10 21:44:04 2025 -0700
add copyright block
commit 2a9ac775a2dc52a568cf5d158b526180a9ae290f
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 10 21:42:09 2025 -0700
update recent changes
commit 7583f10fc1ed2f44c048c3312572c1f5b8100d2d
Merge: f1b3c52fc 295e9ff83
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 10 21:36:26 2025 -0700
Merge branch 'develop' into feature/ginkgo-batched
Conflicts:
CHANGELOG.md
doc/shared/RecentChanges.rst
commit 295e9ff83f75b85b91e65c40546b6cb9ff6c83cb
Author: David Gardner <gardner48@llnl.gov>
Date: Thu Jul 10 09:01:11 2025 -0700
Feature: KINSOL relax requirements on KINSetMAA and KINSetOrthAA (#742)
Update `KINSetMAA` and `KINSetOrthAA` to allow for setting the Anderson
acceleration depth and orthogonalization method after `KINInit`.
Additionally, `KINSetMAA` and `KINSetNumMaxIters` may now be called in
any order.
commit 335c524698a782f00021e16ffe26f930aaf02b1f
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Jul 8 12:20:13 2025 -0700
CI: Test extended precision (#740)
Re-enable tests with extended precision
commit b43e637d1bee6c42edfa7c244f00d9792f9ab208
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jul 7 12:36:33 2025 -0700
Bugfix: MERK Unordered Groups (#741)
Update MERK to use the minimum stage number in a group when computing
the fast time scale forcing. This fixes a bug where, in methods with
unordered stages in a group (MERK43 and MERK54), the forcing computation
would include stage RHS vectors that had not been computed yet. These
vectors are scaled by zero, so in most cases would not impact results
but do add extra vector operations. However, in cases where these
vectors contain `inf` or `nan`, this would lead to erroneous forcing
terms.
commit f1b3c52fc9dcc47617f3d4d49b364e31f6192977
Author: David J. Gardner <gardner48@llnl.gov>
Date: Mon Jul 7 10:14:22 2025 -0700
apply formatting
commit f97729a4506dec80d8dcbd9ac5aa6b2711de2893
Merge: 749c2c520 a7eb69dc3
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jul 7 10:00:01 2025 -0700
Merge branch 'develop' into feature/ginkgo-batched
commit a7eb69dc30902aa08461c5874fc2e2121c42f3e0
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jul 7 06:58:57 2025 -0700
Maintenance: Do not install unit tests (#739)
Update `CMakeLists.txt` files to not install unit tests for vectors,
matrices, etc. that were moved from `examples` to `unit_tests`.
commit 749c2c5203b8aa50f571b897b5ac4c3a1c9b114b
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 3 14:25:09 2025 -0700
remove debugging changes
commit f176e7fa3cdb7565e5642907a1d94bc58d7ac4b8
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 3 14:21:29 2025 -0700
apply formatting
commit 5a4a5579698855c482556e8eba69388a285dd697
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 3 13:27:59 2025 -0700
fix segfaults in matrix test with CUDA
commit 1675f837391d701b767100e68bb3d6142436d912
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 3 13:04:42 2025 -0700
add CUDA output file
commit 1b1a41cf53699853f317728eb9eb247a6ffe21b2
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 3 12:27:12 2025 -0700
fix segfaults in ginkgo batched solver interface
commit bc92c963228198a684c7dab28e9bd6c0cf5e4464
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 3 12:26:33 2025 -0700
fix segfault in batched bruss example
commit 58d8c8c5295978418b137e4b72f5558c0f824117
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 22:47:20 2025 -0700
check that requrested Ginkgo backends are available
commit b722c4bd7f382164ea0c95b6bf969f0b3eed0439
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 21:08:22 2025 -0700
fix loop increment
commit 14ed3405ab4e916a14c08b986657b28233636564
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 18:12:44 2025 -0700
fix compiler warnings
commit 3e67d6188ac1f6a4516f82bca0e053c3538865c0
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 13:48:04 2025 -0700
more test debugging
commit 03e87712ba5b8c4f33276ac48a6e546b1e00ac1c
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 12:59:45 2025 -0700
add prorotypes to address warnings
commit a022f4ca7fe2e48a06795a500d4722fb3776b72d
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 11:30:06 2025 -0700
debug missing warnings
commit b80d200802411abe263a7acdb54809d520b17edf
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 11:05:22 2025 -0700
move non-class methods to impl namespace
commit 90a381b64e25a76b06864191cbf54f557bc98d21
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 11:03:42 2025 -0700
fix initialization order warnings
commit 970cc4d79b0c21e8036bc67489d498851306abdf
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 11:03:01 2025 -0700
move using statements outside impl namespace
commit 07267daea29f6e8c90e41be6dd809c7005097ad2
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 11:02:06 2025 -0700
remove unused macro
commit df7860513a18282d1ddb29d1d74c6f9450d9f072
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 10:12:21 2025 -0700
enable verbose build
commit 3e3ada9640f3b40eb4a478e0ef63b2dfd489ea86
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 21:31:46 2025 -0700
apply formatting
commit dbea58b0f49839ee2cdc136ba2bc0cb2abea17ca
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 21:23:11 2025 -0700
copy data to host to compute solution
commit 5d4b51848962b7dc01518bad815c8733745148be
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 21:20:55 2025 -0700
fix OMP vector length
commit 8f3f1a1121b6a8d0fe6820c9f1703b06abfc8ce0
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 20:55:01 2025 -0700
add output files
commit 4c802f5d8d080f6d3090a4117db34d4d120d732d
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 16:55:09 2025 -0700
apply formatting
commit 9366851e4fd8955efba8deb6af3916fae9b39518
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 16:46:00 2025 -0700
remove old Ginkgo version checks for depreacted code
commit d6e31db08d701c80a57662494a5af4d5d363d705
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 16:39:40 2025 -0700
remove use of deprecated Ginkgo executors
commit aab95abffcd39e92a1d21b2b2ce166916a4cead2
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 16:03:36 2025 -0700
add OpenMP NVector header
commit 1f5a3b02dd1a1c23f1759fee3d2e54e257efef16
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 15:36:21 2025 -0700
use OpenMP vector with OMP backend
commit f7eee7f597882d4f83f6229adbe7b70f3e483f85
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 15:10:15 2025 -0700
apply formatting
commit 35a253b73c8602861510a6069fba91db84502d56
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 14:43:18 2025 -0700
add return for unknown matrix type
commit 44544ad711f04716045fc59308bbb1d9b14a1e56
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 14:15:19 2025 -0700
move hashmap header back to src/sundials
commit 3a78b58a54260ccf3832be84b77aec1d5452c26f
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 14:06:09 2025 -0700
move SUNHashMap and SUNHashMapKeyValue to types header
commit 11ac4246333e430836e4911fcc8a1c4e6a510b94
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 13:38:40 2025 -0700
update include
commit 9b8872e6020c6ce325f4085d17b04b40ac691256
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 13:37:07 2025 -0700
fix typo
commit 800cd26e11eab9556b44f9a81e69320fa93025e6
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 13:26:36 2025 -0700
install hashmap header
commit 84b50609d93a3144bbfff65e14c33fbbc7d1ff62
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 13:25:54 2025 -0700
update includes
commit 8aec238ea4d10c2b7a86aa1f70fcdb1b939de06a
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 12:59:03 2025 -0700
move hashmap header to sundials/priv
commit caad7dbaf6529bde7123685606f3da5817bf0ee7
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 12:49:04 2025 -0700
remove unused includes
commit 884faef81686353c33307d003f954ec6eac0b42e
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 12:07:11 2025 -0700
install priv/sundials_logger_impl.h
commit b44635da4ff03a602623034df9c9825b8d01f785
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 11:47:32 2025 -0700
remove unused variables
commit c78a570619d808fd8b04c7adbfaf72c64fa95e0d
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 11:29:00 2025 -0700
fix cuda/hip order in serial/cuda/hip macro
commit fd1993b53eb2d89810567090ce2dbff6f8c71187
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 11:00:01 2025 -0700
fix typos in serial/cuda/hip macro usage
commit 1c74118bfa80b50ebfc92e2e10d6ac6d7e353640
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 10:33:43 2025 -0700
remove unused variables
commit 441ef517274e13f602a7001cb2aa8ce728894d34
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 10:32:53 2025 -0700
fix typo in include
commit c8a6bf74a6d5da75fee25ab1e7e9b45930add042
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 10:02:04 2025 -0700
fix compilaiton error
commit f603f6c97c4c2ae58d8723944cd32c67c84c3d66
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 09:51:58 2025 -0700
apply formatting
commit 9cbe6defd940a16ed277a9c19560e3788411e6e3
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 09:27:25 2025 -0700
fix cross references
commit 32e4166b2eca67482f8564a0f6ecacc8cc1c57d8
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 09:27:13 2025 -0700
add new ginkgo cpp identifiers
commit a762f7da3b1e5c9f05377c4f0eed3f23416b111f
Merge: 578976294 fc8ed9c23
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 09:16:14 2025 -0700
Merge branch 'develop' into feature/ginkgo-batched
commit fc8ed9c2358cbc70d4a5c84d84a1b621b66a8146
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jun 30 10:55:08 2025 -0700
Bugfix: Add MRI H-Tol to Fortran module, fix segfault with nested MRI methods (#734)
Fix a CMake bug where the MRI H-Tol controller was not included in the
ARKODE Fortran module.
Fix a bug in MRIStep where a segfault occurs when an MRI coupling table
is not explicitly set and an MRI integrator is nested inside another MRI
integrator.
commit 5789762944ee8ae698a478b6333f2dcbbb4360de
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Mon Jun 30 10:02:04 2025 -0700
lock down gitlab ci to ginkgo 1.9.0
commit 4f8c313d4c9b3d1586d9984655bce7921193a581
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jun 30 06:48:52 2025 -0700
CI: Enable unit tests in GitLab (#735)
* Enable unit tests in GitLab CI with output comparisons disabled.
* Fix default logging level in spack package file
* Update error handler tests for different logging levels
commit 98be5c20d4d6fee6e3a829862fad4704ea2457c3
Merge: 2eebcf08f d3d4816ca
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jun 27 12:14:32 2025 -0700
Merge branch 'develop' into feature/ginkgo-batched
commit d3d4816ca52543c1e5a9f2a4eaab2ec91c689f47
Author: David Gardner <gardner48@llnl.gov>
Date: Fri Jun 27 12:14:17 2025 -0700
Bugfix and CI: Fix SUNMemoryHelper_CopyAsync stream and update jenkins ginkgo version (#733)
* Fixed a bug in the CUDA and HIP implementations of
`SUNMemoryHelper_CopyAsync` where the stream was not set
* Update the ginkgo install used in the Jenkins CI to `@master` which
currently corresponds to v1.9.0
* Check for Ginkgo 1.9.0 or newer in CMake
* Default to C++17 when Ginkgo is enabled
* Update GitLab to use C++17
* Enable CUDA warnings as errors when `ENABLE_WARNINGS_AS_ERRORS` is
`ON`
* Remove C90 check when hypre is enabled
commit bb93bbb220c02c0ec09ec3b0f2e2f4097c178836
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 11:25:39 2025 -0700
Docs: Update CVODE examples guide intro (#730)
Thank you Alan Hindmarsh for the updates.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 2eebcf08f966bb20ee93618ff6156cd3c2939f2b
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Thu Jun 26 11:23:07 2025 -0700
namespace
commit 2f8dc037d7c3f5bdfbe99c4435afb4198e35e095
Merge: 8b376ed59 c7c8c3824
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 10:55:58 2025 -0700
Merge branch 'develop' into feature/ginkgo-batched
commit c7c8c3824b5ac939154ce580cecf247ff39f015a
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 10:55:45 2025 -0700
update gitlab ci spack version and ginkgo version (#729)
This updates spack version used in our GitLab CI testing so that we can
use a newer version of Ginkgo.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit b1fd6b5189428ba38102e2d7c77f2837c5d10b44
Author: Steven Roberts <roberts115@llnl.gov>
Date: Thu Jun 26 11:56:54 2025 -0400
Docs: Fix typos in adjoint description (#731)
Add missing * and adjust summation for adjoint description
commit 8b376ed5903dd0e3c6837eae246e8922bce281ce
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 25 12:23:53 2025 -0700
bump answers
commit 20a2f36dd62152f8ec45a1a27d4e8fddfd0429c6
Author: format-robot <no-reply@llnl.gov>
Date: Wed Jun 25 09:59:34 2025 +0000
apply format updates
commit d2649efac5cdb9911e3f97ade56dc45a241354ab
Author: format-robot <no-reply@llnl.gov>
Date: Wed Jun 25 09:56:05 2025 +0000
apply spelling updates
commit 99af9d26c08eabb6208367f9122fbd8781f9e938
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 02:51:23 2025 -0700
regen swig
commit fe9fcc0b268739c59cd797c1783290b2a2e5e427
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 02:46:32 2025 -0700
format
commit 9e340bc21d22e2294746e4c0d18e48f74268bc85
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 02:45:09 2025 -0700
add matrix docs
commit 54e7035c189cc4f8653f3730373a3e8ba867c322
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 02:37:57 2025 -0700
recent changes
commit 108e06d6ee790e6c8923f7c73056b9240eee7a1e
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 02:35:03 2025 -0700
add docs for block linear solver
commit c6785d4def287bb56941ea4bf8650c589f737caf
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 01:59:16 2025 -0700
relax required ginkgo version
commit 8b6d549bb2d5a3b0ea42f6941309f127be3a4259
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 01:57:13 2025 -0700
fix ginkgo batched example
commit 0fd4efb24445bee68ba12c904bae38abbfae7e90
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Jun 24 23:46:27 2025 -0700
cleanup
commit f37e21550e3bd721a59c60a167b74603da86df48
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Jun 24 23:46:06 2025 -0700
remove cg test
commit 40ec4fe3a31d18d19d5946d818b6fdbccf9a7804
Merge: 0da4892ea 444546fc2
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Jun 24 23:35:51 2025 -0700
Merge remote-tracking branch 'origin/develop' into feature/ginkgo-batched
commit 444546fc28d188341d6d3a62346b3be492211355
Author: Mustafa Ağgül <33010171+maggul@users.noreply.github.com>
Date: Tue Jun 24 12:21:38 2025 -0500
Bugfix: Shared Library Versions (#724)
* fix shared library versions for oneMKL matrix and linear solver, PETSc SNES
* fix typos in docs and comments
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 8ea6d153486e752ec344b9c95aa4385604209ae0
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Jun 24 11:43:02 2025 -0400
Maintenance: Resolve a few small todo items (#723)
* Add SUNRsamesign and SUNRdifferentsign
* Use SUNRcopysign
-----
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 56088c9af254174c6a8bbe95d13b26dd460f8bec
Author: Timothy Bourke <tim@tbrk.org>
Date: Tue Jun 24 16:18:03 2025 +0200
Docs: Minor fixes (#720)
Correct function signature and default values
commit 79e43ba9ac8088515ef2c22f93a258fdd2cb54da
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jun 23 17:03:13 2025 -0700
Maintenance: Start next release cycle (#727)
Update recent changes for next release cycle
commit c3ff4663573953facb33eb026dd5d80444ecedc8
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Jun 17 09:11:04 2025 -0700
Release: v7.4.0 (#718)
SUNDIALS Release v7.4.0
commit ca371919f71c3894047b3e0bc2f1664f262fdc02
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 16 14:03:17 2025 -0700
Bugfix: Allowable Eta values in CVodeSetEtaFixedStepBounds (#706)
The docs state that `eta_max_fx >= 1.0` is valid, but the code checks for
`eta_max_fx > 1.0`. `1.0` should be allowed (similarly for `eta_min_fx`).
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
Co-authored-by: Steven Roberts <roberts115@llnl.gov>
commit 838669cf6f9c7d0d2ee623001d60807d963680c9
Author: Steven Roberts <roberts115@llnl.gov>
Date: Mon Jun 16 13:34:51 2025 -0400
Feature: Remove ARKodeSetCFLFraction cfl_frac restriction (#714)
Allow for CFL values greater than 1
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 396b71a1fcfdd3eef9a43be86fd01146e3adb8e7
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 16 08:39:32 2025 -0700
Bugfix: Compensated summation and number of recomputes (#716)
This PR enables us to use compensated summation of `tcur` in any of the
ARKODE modules and fixes the "nrecomputes" accumulator in the
`SUNAdjointStepper`.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 619d3959fe62d5500835d036a428c2ba0085ae3f
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Jun 2 17:49:34 2025 -0700
Build(deps): Bump docker/build-push-action from 6.17.0 to 6.18.0 (#712)
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
commit 2edb5aa9ff54a99a42df4c73b983e5ded3d2ac1f
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Fri May 23 13:59:50 2025 -0700
Build(deps): Bump docker/build-push-action from 6.16.0 to 6.17.0 (#707)
Bumps docker/build-push-action from 6.16.0 to 6.17.0.
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
commit d8b7f2cf669ed991ed785b91743c4275b5b01fbc
Author: Mustafa Ağgül <33010171+maggul@users.noreply.github.com>
Date: Fri May 23 11:32:45 2025 -0500
Docs: Fix math formatting in SUNAdjoint Introduction (#708)
Add missing directive
commit 07d21c2c5ae33211a9a2fafd8eac56de5582dce0
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue May 20 09:56:53 2025 -0700
Bugfix: Set adjMallocDone flag on AdjFree methods (#704)
Fixed segfaults in `CVodeAdjInit` and `IDAAdjInit` when called after adjoint memory has been freed.
commit 8e0da93f611bd3254719ada586e8c276628711eb
Author: Cody Balos <balos1@llnl.gov>
Date: Fri May 16 14:33:58 2025 -0700
Docs: Fix default value of eta fixed step upper bound in arkode math section (#705)
The default value was changed to `1.0` in ARKODE v6.3.0 (SUNDIALS v7.3.0)
commit d1e07340e760f221ff1bf1f404734e81d2f9811d
Author: David Gardner <gardner48@llnl.gov>
Date: Wed May 7 17:28:50 2025 -0700
Maintenance: Ignore python formatting in blame (#701)
Ignore formatting updates from #699 in blame
commit f4dd677103170d9eef53b1237aac4ad438a094a4
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed May 7 14:46:22 2025 -0700
Tools: Separate MRI logging data by level (#698)
Add option to extract MRI logging data separated by level
commit b166f03e29852a17fec5747cb64c4c986f24d42b
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed May 7 11:08:47 2025 -0700
Maintenance: update python formatting (#699)
Format all python files using Spack style with black
commit 83478e706d41ac21465b85b0feca8cf1f5ce7834
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue May 6 09:04:25 2025 -0700
Docs: Add warning for users to free flag strings (#700)
Note sure if the warning or note directive is preferable for this.
commit 0da4892ea1ee65e78eea44ac201aa0c4a35501d3
Author: Cody Balos <balos1@llnl.gov>
Date: Mon May 5 17:10:03 2025 -0700
turn on more ginkgo tests
commit b01225c594b7a6931d860281f1421ff87f825f26
Author: Cody Balos <balos1@llnl.gov>
Date: Mon May 5 16:56:53 2025 -0700
move sundials_logger_impl.h to priv so we can access in header only impls
commit 4992d38bd49a222261c6d81ec8a82e9b35bd1929
Author: Cody Balos <balos1@llnl.gov>
Date: Mon May 5 16:54:34 2025 -0700
fix scaling
commit de123eaecc27e1a33428e9319c713f8513ac8814
Author: Cody Balos <balos1@llnl.gov>
Date: Mon May 5 14:19:01 2025 -0700
remove ell test
commit 67062a30b622e86721eed88d5e99f86cb9c10381
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Sun May 4 14:39:43 2025 -0700
Build(deps): Bump docker/build-push-action from 6.15.0 to 6.16.0 (#697)
commit eba8db3d1e856db0d221427eda8ea8a0ce967ef9
Author: Cody Balos <balos1@llnl.gov>
Date: Fri May 2 15:57:39 2025 -0700
fix dense case
commit 96333052eefab3505ada044b9de27c248121a848
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Apr 29 17:09:44 2025 -0700
[wip] try multiple matrix format and batch solver co,bos
commit 255c45edd37123a86febc2a1323601e696742d24
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Apr 29 17:09:20 2025 -0700
use sunindextype
commit 41d1bb7ce08f0d9f81071ce90a56e836685c4745
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Apr 29 15:08:23 2025 -0700
fix compilation errors
commit 5d38db6cee5a0a4ad542298408aa5452941e1bae
Merge: 823623cfc 70ef60926
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Tue Apr 29 13:20:56 2025 -0700
Merge remote-tracking branch 'origin/develop' into feature/ginkgo-batched
commit 70ef609268b14de0a4dea0952f4b5a0ab6921cc1
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed Apr 16 09:27:59 2025 -0700
Docs: Minor formatting fixes in docs (#691)
Fix typos in docs
commit b6c68f835f656d254a84e2223500852bf01b67ee
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Apr 15 08:45:31 2025 -0700
Bugfix: Fix spacing in some IDA(S) error messages (#690)
Add space after error message time in IDA(S)
commit 295f47ff9889dd97fabdd26a21b971ecd71b3653
Author: Cody Balos <balos1@llnl.gov>
Date: Sun Apr 13 21:33:36 2025 -0700
Bugfix: Fix Caliper compile test (#688)
Fixed a CMake bug that would cause the Caliper compile test to fail at configure time.
------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit e3b56f0336b86a7f6e08939e104fcc25cd54d051
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Apr 8 07:03:04 2025 -0700
Bugfix: CVODE tarscript (#686)
Add missing `.sh`
commit ef498ea0cc674ea413e4dec25c94d39025bc0293
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Apr 7 13:11:27 2025 -0700
Maintenance: Start new release cycle (#685)
Update recent changes for next release cycle
commit e941546af1a5b5e492dcac0a1872540e9961c556
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Apr 7 06:54:19 2025 -0700
Release: v7.3.0 (#684)
SUNDIALS Release v7.3.0
commit 3d2f7744e786bec549babc1020fbd442612aa004
Author: Steven Roberts <roberts115@llnl.gov>
Date: Fri Apr 4 10:46:29 2025 -0700
Feautre: Update ARKODE adaptivity controller defaults (#565)
Updated adaptivity controller defaults
- No deadzone
- Bias: 1.0
- Safety factor: 0.9
- Adjustment: 0
- I controller
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
Co-authored-by: Daniel R. Reynolds <reynolds@smu.edu>
Co-authored-by: Daniel R. Reynolds <dreynolds@umbc.edu>
commit 2a817e705bc891c4201230bbdbcfc23979d6a570
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Apr 2 17:35:52 2025 -0700
Feature: ASA core modules and ERK discrete adjoint support (#641)
Add the core modules for adjoint sensitivity analysis and add
discrete adjoint capability for ERK methods in ERKStep and
ARKStep modules in ARKODE.
---------
Co-authored-by: Steven Roberts <roberts115@llnl.gov>
Co-authored-by: David Gardner <gardner48@llnl.gov>
Co-authored-by: Daniel R. Reynolds <reynolds@smu.edu>
commit 06d44a2c3809e8d3bcdcdca139adf2052518d0bd
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Apr 1 20:08:56 2025 -0700
Feature: CVODE Resize History (#678)
Add support for resizing CVODE and CVODES when solving initial value
problems where the number of equations and unknowns changes over time.
Resizing requires a user supplied history of solution and right-hand
side values at the new problem size.
commit dbe9d95fa867fe5ffe3125a45760ff5cab0bac61
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Apr 1 14:25:41 2025 -0700
CI: Fix mingw32 tests (#683)
[MINGW-packages](https://github.com/msys2/MINGW-packages) dropped
support OpenBLAS
(msys2/MINGW-packages@609f024a4ab22aed8fa77f63cc27e50cfb489499) and
SuiteSparse
(msys2/MINGW-packages@c5ee4e8ee5a17e8d160f967ba74827dfe2b520ca) on
mingw32. These packages are still available for mingw64.
commit 3494706c093837b3d30677a62c742f33ce9a7339
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Mar 31 07:06:27 2025 -0700
Feature: Anderson adaptive damping and depth (#679)
Add support in KINSOL for setting a user-supplied functions to compute
the damping factor and depth in fixed-point or Picard iterations.
commit 8c684cb278d9902aa8b5d72ffc7d77da50f2ceea
Author: Steven Roberts <roberts115@llnl.gov>
Date: Sat Mar 22 15:31:57 2025 -0700
Bugfix: Resizing MRI (#677)
Fix bug where trying to resize an MRI method leads to an erroneous
"Unable to resize vector" error.
---------
Co-authored-by: David J. Gardner <gardner48@llnl.gov>
commit aba7df67f83fd3d94e54c9927228edff0bac0c94
Author: Chris Vogl <vogl2@llnl.gov>
Date: Sat Mar 22 12:50:15 2025 -0400
Examples: Corrected default values in ark_harmonic_symplectic help message (#676)
The default values listed in help message are not what is used in the
code.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 71a480a419e39c22ae3cc2939be25785b721f17d
Author: Steven Roberts <roberts115@llnl.gov>
Date: Fri Mar 21 09:11:53 2025 -0700
Feature: Improve precision of some RK coefficients (#675)
Improved the precision of the coefficients for
`ARKODE_ARK324L2SA_ERK_4_2_3`,
`ARKODE_VERNER_9_5_6`,
`ARKODE_VERNER_10_6_7`,
`ARKODE_VERNER_13_7_8`,
`ARKODE_ARK324L2SA_DIRK_4_2_3`, and
`ARKODE_ESDIRK324L2SA_4_2_3`.
---------
Co-authored-by: David J. Gardner <gardner48@llnl.gov>
commit 47af768f6c2ee279f7493bba6a577e7a34c43e14
Author: Steven Roberts <roberts115@llnl.gov>
Date: Thu Mar 20 09:59:22 2025 -0700
Deprecate Work Space Functions (#669)
Deprecate all work space functions for removal in version 8.0.0
-----
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit d3fdca38e8e4a953d938e672f13743da63fa398a
Author: Harmen Stoppels <harmenstoppels@gmail.com>
Date: Wed Mar 19 17:42:21 2025 +0100
Maintenance: spack v1.0 support (#673)
Spack v1.0 will parse `pkg %gcc +foo` as "pkg with direct dependency gcc
with variant foo enabled" instead of "pkg with variant foo enabled and
compiler gcc". Reorder as `%foo +bar` -> `+bar %foo` to be compatible
with Spack v0.x and v1.0.
commit a5c62e6ed2f61985c91afdfe449f66c6da0d33d1
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Mar 18 17:25:07 2025 -0700
Feature: Fix Adaptivity for Small Errors or no CFL (#548)
The error floor parameter used in the controllers could cause an
error overestimation, particularly for the first step. Use I controller
for initial steps with insufficient history.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 05f019f03b28129577cb723883b95d96743d559e
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Mar 17 08:15:32 2025 -0700
CI: Windows Intel Ninja Test (#672)
Update Intel compiler version to fix CI failures with Windows + Intel +
Ninja
commit 034e1e30c2ba9344ee1329abd174189f05978522
Author: Steven Roberts <roberts115@llnl.gov>
Date: Sun Mar 16 12:31:30 2025 -0700
Docs: Fix typo in SplittingStep description (#670)
commit 0f4d5ae8ff3fca36ea5deeef0af6e0465d17fc01
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue Mar 11 09:29:19 2025 -0700
Build(deps): Bump docker/build-push-action from 6.13.0 to 6.15.0 (#668)
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commit 3344daa29d990004c3fcacd85aa8f25c1338fe02
Author: Steven Roberts <roberts115@llnl.gov>
Date: Fri Feb 28 17:12:42 2025 -0800
Docs: Fix summation bound (#666)
Fix summation bound in operator splitting docs
commit 6cb302c90379b0f18436ffef0fcdb08e97a57ef7
Author: Chris Vogl <vogl2@llnl.gov>
Date: Wed Feb 12 12:36:37 2025 -0500
Docs: Fix typo in table description (#664)
Add "default" to the docs for the Yoshida Butcher Table constant
description.
commit 35d6d24d46c879cb89f7adba610f9381bf8516d5
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed Feb 12 06:48:18 2025 -0800
Feature: Update default ARKODE methods (#547)
Update the default RK tables in ARKODE:
- ARK order >2: Follows the recommendations in the conclusion of
https://doi.org/10.1016/j.apnum.2018.10.007
- ERK order 4: Improved principal error and embedded quality metrics
- ERK order 5: Improved principal error and embedded quality metrics
- ERK order 8: Switch to a method designed for local extrapolation mode,
likely better principal error.
- DIRK order 2: Improved principal error, L-stability, and stage order 2
- DIRK order >2: Follows the recommendations in the conclusion of
https://doi.org/10.1016/j.apnum.2019.07.008
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 51087e02d0a67ec29d5035858e1ceec1592df3d2
Author: Daniel R. Reynolds <reynolds@smu.edu>
Date: Fri Feb 7 16:16:32 2025 -0600
Bugfix: Python plotting script (#663)
Removes an incorrect "sanity check" from python plotting script
so it works with serial and parallel output files.
commit b0cb581f324b46aa2906f39a03aa73a8c400bf34
Author: Mustafa Ağgül <33010171+maggul@users.noreply.github.com>
Date: Wed Feb 5 19:23:41 2025 -0600
Docs: fix typo in README and in a function input argument (#661)
Remove small space due to inconsistent latex rendering of README
Correct docs for LinearCombinationVectorArray
commit 0725fdbc00f8b5c5f8c6b8128f30a4702d18e48a
Author: Steven Roberts <roberts115@llnl.gov>
Date: Fri Jan 31 07:25:31 2025 -0800
Bugfix: Fix return value in ARKodeSetFixedStep (#659)
Previously success was always returned, even if an error occurred
commit 3e3c999274c02e0e5d86054e8a34b61203485cfa
Author: Chris Vogl <vogl2@llnl.gov>
Date: Fri Jan 31 09:16:19 2025 -0500
Maintenance: Typo in Operator Splitting Example (#653)
Fix typo in error check
commit 294361e7f6c9a9d8fd67f54b6eb7f0b5114551da
Author: Mustafa Ağgül <33010171+maggul@users.noreply.github.com>
Date: Thu Jan 30 20:39:59 2025 -0600
Maintenance: Fixing incorrect function name returns in check_flag calls (#658)
Some of the `check_flag` calls in the LSRK examples were not returning
the correct function names.
commit f33b6d7abc5cdef8d5d766b620e23e45b352b988
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Jan 28 20:49:58 2025 -0800
CI: Simplify addressing of CI errors (#657)
Uniquely names artifacts for a matrix of jobs to so there's no conflicts
The changes will allow us to get out files across all logging levels and
precisions with one run rather than repeated runs and updates.
commit b2db253c00970c48c273e991ad4223dc55769a72
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Jan 28 16:43:27 2025 -0800
Bugfix: Correct time label in log parser (#656)
Fix time key in get_history
commit 8e3df317810a34fb539835f4542238e074044333
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Jan 28 15:06:07 2025 -0800
Docs: Fix Shu-Osher Butcher table entry (#655)
Fix typo in Shu-Osher-3-2-3 ERK method table docs
commit e9e8f5cf1e55991e61740c0b9c9b5f5c6d11af17
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Jan 27 16:32:33 2025 -0800
Build(deps): Bump docker/build-push-action from 6.12.0 to 6.13.0 (#654)
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[docker/build-push-action](https://github.com/docker/build-push-action)
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Merge pull request <a
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<li><a
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chore: update generated content</li>
<li><a
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chore(deps): Bump <code>@docker/actions-toolkit</code> from 0.51.0 to
0.53.0</li>
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commit 32b87ca4860998806d9ac84602f5733f1b5dc9e3
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jan 23 13:44:18 2025 -0800
CMake: Add a macro to wrap add_executable (#651)
Add sundials_add_executable macro to easily include/exclude
examples with complex values
commit 7c540be32e2c89b568215c25f4e1fd497ec617a1
Author: Daniel R. Reynolds <reynolds@smu.edu>
Date: Wed Jan 22 12:03:30 2025 -0600
Reorganized organization of checkNvector routines (#647)
Clean up how ARKODE and its steppers check for required and optional
N_Vector routines.
1. Stepper-specific N_Vector operation checks have been removed.
2. ARKODE performs an initial check on the supplied N_Vector for
operations that are always required.
3. Individual ARKODE utilities perform their own N_Vector checks when
they are configured.
4. ARKODE then performs a final check after user configuration is
complete to check any remaining N_Vector operation requirements.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 767679fb673cfb8a2567eb2c0ff3ba49745f5046
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed Jan 22 06:46:15 2025 -0800
Update copyright year (#636)
Update copyright year range for 2025
Add .sh suffix to tarscripts
Fix spelling errors with new codespell version
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit e34ff3d7c811cc20bde7fea6cdd857c439a83dbb
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Jan 20 20:31:54 2025 -0800
Build(deps): Bump docker/build-push-action from 6.11.0 to 6.12.0 (#650)
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Merge pull request <a
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chore: update generated content</li>
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chore(deps): Bump <code>@docker/actions-toolkit</code> from 0.49.0 to
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Merge pull request <a
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update bake-action to v6</li>
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commit cc5e58c72392635b8dc4f2fa657a526b9b8fe185
Author: David Gardner <gardner48@llnl.gov>
Date: Sat Jan 18 09:19:50 2025 -0800
Docs: cleanup install guide (#637)
* Separate sections for installing with Spack and CMake
* Co-locate Linux, Windows, and HPC install instructions in CMake
section
* Remove `ccmake` steps to focus on simpler `cmake` steps
* Create subsections for related CMake options
* Combine TPL sections with related TPL options
* Add cross-references to corresponding TPL modules
* Add configuration examples for all TPLs
* Combine addons section with CMake option
* Create subsections for table of headers and libraries
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* Add missing headers and libraries
* Remove deprecated headers
* Remove duplicate text
---------
Co-authored-by: Steven Roberts <roberts115@llnl.gov>
commit 72b88cc51bc2847133c466c9f6215c35fa671602
Author: Steven Roberts <roberts115@llnl.gov>
Date: Sat Jan 18 08:19:28 2025 -0800
Maintenance: Remove unused macros (#644)
Add -Wunused-macros and -Wunused-local-typedefs with ENABLE_ALL_WARNINGS
--------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit f963373db52c9c5d19558f12f700e036c8c52a7f
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jan 17 16:25:05 2025 -0800
CI: Fix /autofix command (#646)
Currently, our `/autofix` command does not work because the jobs don't
have the 'write' permission. This will fix it, but not until the change
ends up in `main`.
This permission can be set globally too, but this is more secure.
commit 3f72e6cb9446aba3a92c67ac1c48edec14a19b0c
Author: David Gardner <gardner48@llnl.gov>
Date: Fri Jan 17 09:42:33 2025 -0800
CI: Add jobs to test PDF doc builds (#645)
Add CI jobs to build PDFs for the user guides, example docs, and install
guide
commit 7c90f5cf95639249b1086a0493d55eab7abbc88b
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed Jan 15 16:29:25 2025 -0800
Add macros for consistent sunrealtype formatting (#517)
Add SUN_FORMAT_E, SUN_FORMAT_G, and SUN_FORMAT_SG macros
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 87fef531fc3cc9da2b3e45ef345141151b573a54
Author: Daniel R. Reynolds <reynolds@smu.edu>
Date: Tue Jan 14 12:40:36 2025 -0600
Mustafa-contributor (#643)
This PR rectifies an omission from our last release, where we forgot to
update the lists of SUNDIALS contributors to include Mustafa Aggul (who
contributed the ARKODE LSRKStep module).
commit 517507bbf42af6eb5e190d9a77d3344942cbf7da
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Jan 14 08:31:19 2025 -0800
Bugfix: SUNDIALS_ENABLE_ERROR_CHECKS default value (#638)
Fix the behavior of `SUNDIALS_ENABLE_ERROR_CHECKS` so additional runtime
error checks are disabled by default with all release build types.
Previously, `MinSizeRel` builds enabled additional error checking by
default.
commit 1fb40c0e091eb7b103e1103b8990e1387bf78ccc
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Jan 13 23:59:16 2025 -0800
Build(deps): Bump docker/build-push-action from 6.10.0 to 6.11.0 (#639)
Bumps
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<li>Handlebar <code>defaultContext</code> support for
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Merge pull request <a
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ci(e2e): fix setup docker config</li>
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chore: update generated content</li>
<li><a
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chore(deps): Bump <code>@docker/actions-toolkit</code> from 0.46.0 to
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<li><a
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Merge pull request <a
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from crazy-max/named-context-handlebars</li>
<li><a
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Merge pull request <a
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from crazy-max/remove-buildkit-5561</li>
<li><a
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Revert "init buildkit-5561 workflow"</li>
<li><a
href="https://github.com/docker/build-push-action/commit/d1a4129c41bb3f92b731b33dc29cfe5f6cd9298f"><code>d1a4129</code></a>
chore: update generated content</li>
<li><a
href="https://github.com/docker/build-push-action/commit/49c623eaf82513814393adabc13bf2535384d735"><code>49c623e</code></a>
handlebar defaultContext support for build-contexts input</li>
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commit 792686d3347b1691c0bb100d9fdf78a18f119fd8
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jan 8 21:00:33 2025 -0800
Bugfix: guard zeroing of yerr with compensated sums check (#635)
Only zero yerr when compensated summation is enabled
-----
Co-authored-by: David J. Gardner <gardner48@llnl.gov>
commit f0d64a3d303ef3a5770e742219d9a95a600c8d3c
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Jan 7 00:18:39 2025 -0600
Docs: Fix install guide versions (#633)
Fix version numbers in the install guide
Fix scripts to automatically update version numbers
Fix typo in version changed directive
commit 51aaf9a477c7cfe764dc26e6194ad12fbb648d9a
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Dec 26 09:24:40 2024 -0800
Maintenance: Add sundials-downloads-tracker status badge (#631)
Adding a status badge for the workflow that tracks downloads in
https://github.com/sundials-codes/sundials-download-tracker. This will
make it readily apparent when there is an issue tracking downloads.
See https://github.com/sundials-codes/sundials-download-tracker/issues/1.
commit 52453fa94c343c7d3425b7531cbaead8f107a79f
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Dec 20 14:02:09 2024 -0800
Docs: Add release procedure notes, remove old steps (#630)
Update release checklist
-----
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 935d6a45cfe7f080bce30ab70ffb39859e7f8069
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Dec 20 12:06:14 2024 -0800
Maintenance: Start next release cycle (#629)
Update recent changes for next release cycle
commit 5c53be85c88f63c5201c130b8cb2c686615cfb03
Author: David Gardner <gardner48@llnl.gov>
Date: Fri Dec 20 10:05:18 2024 -0800
Release: 7.2.1 (#628)
SUNDIALS Release v7.2.1
---------
Co-authored-by: Cody Balos <cjbalos@gmail.com>
Co-authored-by: Daniel R. Reynolds <reynolds@smu.edu>
commit ab2f4ad730e87870981a2698e2b3ebd22493e94e
Author: David Gardner <gardner48@llnl.gov>
Date: Thu Dec 19 13:51:23 2024 -0800
CI: Update Testing Options (#625)
* Always enable testing
* Consistent naming of CMake testing options
* Add warnings/errors for some testing option combinations
* Add documentation for testing options
* Move testing README into testing docs
* Cleanup using default testing options
* Enable running test in containers without enabling development tests
* Simplify setting pre and post executable run commands/options in
sundials_add_test
* Remove redundant Jenkins tests
* Remove precision dependent diff option in unit tests
commit 6a615a9be4ac9a869ddb2c98ed712a280801b4ae
Author: David Gardner <gardner48@llnl.gov>
Date: Thu Dec 19 08:40:06 2024 -0800
Bugfix: RHS eval logic with certain IMEX methods (#627)
Fix a bug in ARKStep where an extra right-hand side evaluation occurs
each time step when enabling the ``ARKodeSetAutonomous`` option and
using an IMEX method where the DIRK table has an implicit first and is
not stiffly accurate. Fix a bug in counting the number of explicit RHS
evaluations in the ARKStep Dahlquist unit test.
---------
Co-authored-by: Daniel R. Reynolds <reynolds@smu.edu>
commit 525c71bb5f5737007654287f3a2bacae5853ef8b
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Dec 16 17:42:03 2024 -0800
Maintenance: Remove snprintf wrappers (#623)
Remove wrappers that were originally part of a C90 workaround and
are no longer needed now that C99 is required
commit 4a534497108559cee004b696d3172dffa0215942
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Dec 16 14:13:48 2024 -0800
CMake: remove force variable macro (#624)
Remove mostly unused force_variable CMake macro
commit f0860810412f7d0fff0fd49c1ec884c16cf6d01e
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Dec 16 10:00:56 2024 -0800
Docs: Separate sections (#626)
Create separate sections for documenting source code and documentation
in the developer guide
commit eb4c4da8823cc3b07dd5a537cdc51295bf39d617
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Dec 12 11:09:39 2024 -0800
CI: Separate module unit tests from examples (#602)
Move vector, matrix, linear solver, and nonlinear solver tests to unit test directory
-----
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 864e31f6df78d777af6cdeefc83c7970cfa53162
Author: David Gardner <gardner48@llnl.gov>
Date: Wed Dec 11 16:14:38 2024 -0800
Maintenance: Start next release cycle (#622)
Updates to start the next release cycle on develop
commit 0eff39663606f2ff280c4059a947ed62ae38180a
Author: David Gardner <gardner48@llnl.gov>
Date: Wed Dec 11 07:27:48 2024 -0800
Release: 7.2.0 (#620)
SUNDIALS Release v7.2.0
commit 545db2ab5afd7f4b0f556503b461d318c2784c0f
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Dec 10 18:49:43 2024 -0800
Feature: Logging Updates (#501)
Follow on to utilities added in #499
* Ma…
balos1
added a commit
that referenced
this pull request
Sep 2, 2025
commit a5ebc2c5a549e338ba2958e1560b6ee2b3d0551c
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Aug 27 16:21:23 2025 -0700
restore develop .github/workflows
commit 6515791f106e7ce03705e0915152f71622453ae4
Merge: 66bfd6b80 5af77e3a2
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Jul 22 11:26:40 2025 -0500
Merge branch 'develop' into feature/ginkgo-batched
commit 66bfd6b804787f70519af99bf13377c73553a7fd
Merge: fc6bc9870 7df148da3
Author: David J. Gardner <gardner48@llnl.gov>
Date: Mon Jul 21 17:48:53 2025 -0500
Merge branch 'develop' into feature/ginkgo-batched
Conflicts:
.github/workflows/check-format.yml
.github/workflows/check-spelling.yml
.github/workflows/check-swig.yml
.gitlab/jobs/dane.yml
.gitlab/jobs/tioga.yml
CHANGELOG.md
cmake/tpl/SundialsGinkgo.cmake
doc/shared/RecentChanges.rst
doc/shared/sundials_vars.py
doc/superbuild/source/developers/getting_started/UsefulUtilities.rst
src/arkode/arkode_forcingstep.c
src/arkode/arkode_lsrkstep_io.c
src/arkode/arkode_splittingstep.c
src/arkode/arkode_splittingstep_coefficients.c
src/arkode/arkode_sprkstep_io.c
src/sunadjointcheckpointscheme/fixed/sunadjointcheckpointscheme_fixed.c
src/sundials/sundatanode/sundatanode_inmem.c
src/sundials/sundatanode/sundatanode_inmem.h
src/sundials/sundials_hashmap_impl.h
src/sundials/sundials_logger.c
src/sundials/sundials_logger_impl.h
test/unit_tests/sundials/test_sundials_hashmap.cpp
test/unit_tests/sunlinsol/ginkgo/CMakeLists.txt
commit fc6bc98703bb7659035aa7cfd7b0f7b0697d8dda
Author: David J. Gardner <gardner48@llnl.gov>
Date: Fri Jul 11 09:04:48 2025 -0700
fix SUNStrToReal usage
commit 7dae6921c7b52f9771db0927db5fefa69b77448e
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 10 22:19:38 2025 -0700
use SUNStrToReal
commit 7ff5d7ebe8d767b3424153c3833e95808a56c7b3
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 10 21:44:04 2025 -0700
add copyright block
commit 2a9ac775a2dc52a568cf5d158b526180a9ae290f
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 10 21:42:09 2025 -0700
update recent changes
commit 7583f10fc1ed2f44c048c3312572c1f5b8100d2d
Merge: f1b3c52fc 295e9ff83
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 10 21:36:26 2025 -0700
Merge branch 'develop' into feature/ginkgo-batched
Conflicts:
CHANGELOG.md
doc/shared/RecentChanges.rst
commit 295e9ff83f75b85b91e65c40546b6cb9ff6c83cb
Author: David Gardner <gardner48@llnl.gov>
Date: Thu Jul 10 09:01:11 2025 -0700
Feature: KINSOL relax requirements on KINSetMAA and KINSetOrthAA (#742)
Update `KINSetMAA` and `KINSetOrthAA` to allow for setting the Anderson
acceleration depth and orthogonalization method after `KINInit`.
Additionally, `KINSetMAA` and `KINSetNumMaxIters` may now be called in
any order.
commit 335c524698a782f00021e16ffe26f930aaf02b1f
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Jul 8 12:20:13 2025 -0700
CI: Test extended precision (#740)
Re-enable tests with extended precision
commit b43e637d1bee6c42edfa7c244f00d9792f9ab208
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jul 7 12:36:33 2025 -0700
Bugfix: MERK Unordered Groups (#741)
Update MERK to use the minimum stage number in a group when computing
the fast time scale forcing. This fixes a bug where, in methods with
unordered stages in a group (MERK43 and MERK54), the forcing computation
would include stage RHS vectors that had not been computed yet. These
vectors are scaled by zero, so in most cases would not impact results
but do add extra vector operations. However, in cases where these
vectors contain `inf` or `nan`, this would lead to erroneous forcing
terms.
commit f1b3c52fc9dcc47617f3d4d49b364e31f6192977
Author: David J. Gardner <gardner48@llnl.gov>
Date: Mon Jul 7 10:14:22 2025 -0700
apply formatting
commit f97729a4506dec80d8dcbd9ac5aa6b2711de2893
Merge: 749c2c520 a7eb69dc3
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jul 7 10:00:01 2025 -0700
Merge branch 'develop' into feature/ginkgo-batched
commit a7eb69dc30902aa08461c5874fc2e2121c42f3e0
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jul 7 06:58:57 2025 -0700
Maintenance: Do not install unit tests (#739)
Update `CMakeLists.txt` files to not install unit tests for vectors,
matrices, etc. that were moved from `examples` to `unit_tests`.
commit 749c2c5203b8aa50f571b897b5ac4c3a1c9b114b
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 3 14:25:09 2025 -0700
remove debugging changes
commit f176e7fa3cdb7565e5642907a1d94bc58d7ac4b8
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 3 14:21:29 2025 -0700
apply formatting
commit 5a4a5579698855c482556e8eba69388a285dd697
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 3 13:27:59 2025 -0700
fix segfaults in matrix test with CUDA
commit 1675f837391d701b767100e68bb3d6142436d912
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 3 13:04:42 2025 -0700
add CUDA output file
commit 1b1a41cf53699853f317728eb9eb247a6ffe21b2
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 3 12:27:12 2025 -0700
fix segfaults in ginkgo batched solver interface
commit bc92c963228198a684c7dab28e9bd6c0cf5e4464
Author: David J. Gardner <gardner48@llnl.gov>
Date: Thu Jul 3 12:26:33 2025 -0700
fix segfault in batched bruss example
commit 58d8c8c5295978418b137e4b72f5558c0f824117
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 22:47:20 2025 -0700
check that requrested Ginkgo backends are available
commit b722c4bd7f382164ea0c95b6bf969f0b3eed0439
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 21:08:22 2025 -0700
fix loop increment
commit 14ed3405ab4e916a14c08b986657b28233636564
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 18:12:44 2025 -0700
fix compiler warnings
commit 3e67d6188ac1f6a4516f82bca0e053c3538865c0
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 13:48:04 2025 -0700
more test debugging
commit 03e87712ba5b8c4f33276ac48a6e546b1e00ac1c
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 12:59:45 2025 -0700
add prorotypes to address warnings
commit a022f4ca7fe2e48a06795a500d4722fb3776b72d
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 11:30:06 2025 -0700
debug missing warnings
commit b80d200802411abe263a7acdb54809d520b17edf
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 11:05:22 2025 -0700
move non-class methods to impl namespace
commit 90a381b64e25a76b06864191cbf54f557bc98d21
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 11:03:42 2025 -0700
fix initialization order warnings
commit 970cc4d79b0c21e8036bc67489d498851306abdf
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 11:03:01 2025 -0700
move using statements outside impl namespace
commit 07267daea29f6e8c90e41be6dd809c7005097ad2
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 11:02:06 2025 -0700
remove unused macro
commit df7860513a18282d1ddb29d1d74c6f9450d9f072
Author: David J. Gardner <gardner48@llnl.gov>
Date: Wed Jul 2 10:12:21 2025 -0700
enable verbose build
commit 3e3ada9640f3b40eb4a478e0ef63b2dfd489ea86
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 21:31:46 2025 -0700
apply formatting
commit dbea58b0f49839ee2cdc136ba2bc0cb2abea17ca
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 21:23:11 2025 -0700
copy data to host to compute solution
commit 5d4b51848962b7dc01518bad815c8733745148be
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 21:20:55 2025 -0700
fix OMP vector length
commit 8f3f1a1121b6a8d0fe6820c9f1703b06abfc8ce0
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 20:55:01 2025 -0700
add output files
commit 4c802f5d8d080f6d3090a4117db34d4d120d732d
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 16:55:09 2025 -0700
apply formatting
commit 9366851e4fd8955efba8deb6af3916fae9b39518
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 16:46:00 2025 -0700
remove old Ginkgo version checks for depreacted code
commit d6e31db08d701c80a57662494a5af4d5d363d705
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 16:39:40 2025 -0700
remove use of deprecated Ginkgo executors
commit aab95abffcd39e92a1d21b2b2ce166916a4cead2
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 16:03:36 2025 -0700
add OpenMP NVector header
commit 1f5a3b02dd1a1c23f1759fee3d2e54e257efef16
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 15:36:21 2025 -0700
use OpenMP vector with OMP backend
commit f7eee7f597882d4f83f6229adbe7b70f3e483f85
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 15:10:15 2025 -0700
apply formatting
commit 35a253b73c8602861510a6069fba91db84502d56
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 14:43:18 2025 -0700
add return for unknown matrix type
commit 44544ad711f04716045fc59308bbb1d9b14a1e56
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 14:15:19 2025 -0700
move hashmap header back to src/sundials
commit 3a78b58a54260ccf3832be84b77aec1d5452c26f
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 14:06:09 2025 -0700
move SUNHashMap and SUNHashMapKeyValue to types header
commit 11ac4246333e430836e4911fcc8a1c4e6a510b94
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 13:38:40 2025 -0700
update include
commit 9b8872e6020c6ce325f4085d17b04b40ac691256
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 13:37:07 2025 -0700
fix typo
commit 800cd26e11eab9556b44f9a81e69320fa93025e6
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 13:26:36 2025 -0700
install hashmap header
commit 84b50609d93a3144bbfff65e14c33fbbc7d1ff62
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 13:25:54 2025 -0700
update includes
commit 8aec238ea4d10c2b7a86aa1f70fcdb1b939de06a
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 12:59:03 2025 -0700
move hashmap header to sundials/priv
commit caad7dbaf6529bde7123685606f3da5817bf0ee7
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 12:49:04 2025 -0700
remove unused includes
commit 884faef81686353c33307d003f954ec6eac0b42e
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 12:07:11 2025 -0700
install priv/sundials_logger_impl.h
commit b44635da4ff03a602623034df9c9825b8d01f785
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 11:47:32 2025 -0700
remove unused variables
commit c78a570619d808fd8b04c7adbfaf72c64fa95e0d
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 11:29:00 2025 -0700
fix cuda/hip order in serial/cuda/hip macro
commit fd1993b53eb2d89810567090ce2dbff6f8c71187
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 11:00:01 2025 -0700
fix typos in serial/cuda/hip macro usage
commit 1c74118bfa80b50ebfc92e2e10d6ac6d7e353640
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 10:33:43 2025 -0700
remove unused variables
commit 441ef517274e13f602a7001cb2aa8ce728894d34
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 10:32:53 2025 -0700
fix typo in include
commit c8a6bf74a6d5da75fee25ab1e7e9b45930add042
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 10:02:04 2025 -0700
fix compilaiton error
commit f603f6c97c4c2ae58d8723944cd32c67c84c3d66
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 09:51:58 2025 -0700
apply formatting
commit 9cbe6defd940a16ed277a9c19560e3788411e6e3
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 09:27:25 2025 -0700
fix cross references
commit 32e4166b2eca67482f8564a0f6ecacc8cc1c57d8
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 09:27:13 2025 -0700
add new ginkgo cpp identifiers
commit a762f7da3b1e5c9f05377c4f0eed3f23416b111f
Merge: 578976294 fc8ed9c23
Author: David J. Gardner <gardner48@llnl.gov>
Date: Tue Jul 1 09:16:14 2025 -0700
Merge branch 'develop' into feature/ginkgo-batched
commit fc8ed9c2358cbc70d4a5c84d84a1b621b66a8146
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jun 30 10:55:08 2025 -0700
Bugfix: Add MRI H-Tol to Fortran module, fix segfault with nested MRI methods (#734)
Fix a CMake bug where the MRI H-Tol controller was not included in the
ARKODE Fortran module.
Fix a bug in MRIStep where a segfault occurs when an MRI coupling table
is not explicitly set and an MRI integrator is nested inside another MRI
integrator.
commit 5789762944ee8ae698a478b6333f2dcbbb4360de
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Mon Jun 30 10:02:04 2025 -0700
lock down gitlab ci to ginkgo 1.9.0
commit 4f8c313d4c9b3d1586d9984655bce7921193a581
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jun 30 06:48:52 2025 -0700
CI: Enable unit tests in GitLab (#735)
* Enable unit tests in GitLab CI with output comparisons disabled.
* Fix default logging level in spack package file
* Update error handler tests for different logging levels
commit 98be5c20d4d6fee6e3a829862fad4704ea2457c3
Merge: 2eebcf08f d3d4816ca
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jun 27 12:14:32 2025 -0700
Merge branch 'develop' into feature/ginkgo-batched
commit d3d4816ca52543c1e5a9f2a4eaab2ec91c689f47
Author: David Gardner <gardner48@llnl.gov>
Date: Fri Jun 27 12:14:17 2025 -0700
Bugfix and CI: Fix SUNMemoryHelper_CopyAsync stream and update jenkins ginkgo version (#733)
* Fixed a bug in the CUDA and HIP implementations of
`SUNMemoryHelper_CopyAsync` where the stream was not set
* Update the ginkgo install used in the Jenkins CI to `@master` which
currently corresponds to v1.9.0
* Check for Ginkgo 1.9.0 or newer in CMake
* Default to C++17 when Ginkgo is enabled
* Update GitLab to use C++17
* Enable CUDA warnings as errors when `ENABLE_WARNINGS_AS_ERRORS` is
`ON`
* Remove C90 check when hypre is enabled
commit bb93bbb220c02c0ec09ec3b0f2e2f4097c178836
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 11:25:39 2025 -0700
Docs: Update CVODE examples guide intro (#730)
Thank you Alan Hindmarsh for the updates.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 2eebcf08f966bb20ee93618ff6156cd3c2939f2b
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Thu Jun 26 11:23:07 2025 -0700
namespace
commit 2f8dc037d7c3f5bdfbe99c4435afb4198e35e095
Merge: 8b376ed59 c7c8c3824
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 10:55:58 2025 -0700
Merge branch 'develop' into feature/ginkgo-batched
commit c7c8c3824b5ac939154ce580cecf247ff39f015a
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 10:55:45 2025 -0700
update gitlab ci spack version and ginkgo version (#729)
This updates spack version used in our GitLab CI testing so that we can
use a newer version of Ginkgo.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit b1fd6b5189428ba38102e2d7c77f2837c5d10b44
Author: Steven Roberts <roberts115@llnl.gov>
Date: Thu Jun 26 11:56:54 2025 -0400
Docs: Fix typos in adjoint description (#731)
Add missing * and adjust summation for adjoint description
commit 8b376ed5903dd0e3c6837eae246e8922bce281ce
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 25 12:23:53 2025 -0700
bump answers
commit 20a2f36dd62152f8ec45a1a27d4e8fddfd0429c6
Author: format-robot <no-reply@llnl.gov>
Date: Wed Jun 25 09:59:34 2025 +0000
apply format updates
commit d2649efac5cdb9911e3f97ade56dc45a241354ab
Author: format-robot <no-reply@llnl.gov>
Date: Wed Jun 25 09:56:05 2025 +0000
apply spelling updates
commit 99af9d26c08eabb6208367f9122fbd8781f9e938
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 02:51:23 2025 -0700
regen swig
commit fe9fcc0b268739c59cd797c1783290b2a2e5e427
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 02:46:32 2025 -0700
format
commit 9e340bc21d22e2294746e4c0d18e48f74268bc85
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 02:45:09 2025 -0700
add matrix docs
commit 54e7035c189cc4f8653f3730373a3e8ba867c322
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 02:37:57 2025 -0700
recent changes
commit 108e06d6ee790e6c8923f7c73056b9240eee7a1e
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 02:35:03 2025 -0700
add docs for block linear solver
commit c6785d4def287bb56941ea4bf8650c589f737caf
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 01:59:16 2025 -0700
relax required ginkgo version
commit 8b6d549bb2d5a3b0ea42f6941309f127be3a4259
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 01:57:13 2025 -0700
fix ginkgo batched example
commit 0fd4efb24445bee68ba12c904bae38abbfae7e90
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Jun 24 23:46:27 2025 -0700
cleanup
commit f37e21550e3bd721a59c60a167b74603da86df48
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Jun 24 23:46:06 2025 -0700
remove cg test
commit 40ec4fe3a31d18d19d5946d818b6fdbccf9a7804
Merge: 0da4892ea 444546fc2
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Jun 24 23:35:51 2025 -0700
Merge remote-tracking branch 'origin/develop' into feature/ginkgo-batched
commit 444546fc28d188341d6d3a62346b3be492211355
Author: Mustafa Ağgül <33010171+maggul@users.noreply.github.com>
Date: Tue Jun 24 12:21:38 2025 -0500
Bugfix: Shared Library Versions (#724)
* fix shared library versions for oneMKL matrix and linear solver, PETSc SNES
* fix typos in docs and comments
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 8ea6d153486e752ec344b9c95aa4385604209ae0
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Jun 24 11:43:02 2025 -0400
Maintenance: Resolve a few small todo items (#723)
* Add SUNRsamesign and SUNRdifferentsign
* Use SUNRcopysign
-----
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 56088c9af254174c6a8bbe95d13b26dd460f8bec
Author: Timothy Bourke <tim@tbrk.org>
Date: Tue Jun 24 16:18:03 2025 +0200
Docs: Minor fixes (#720)
Correct function signature and default values
commit 79e43ba9ac8088515ef2c22f93a258fdd2cb54da
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jun 23 17:03:13 2025 -0700
Maintenance: Start next release cycle (#727)
Update recent changes for next release cycle
commit c3ff4663573953facb33eb026dd5d80444ecedc8
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Jun 17 09:11:04 2025 -0700
Release: v7.4.0 (#718)
SUNDIALS Release v7.4.0
commit ca371919f71c3894047b3e0bc2f1664f262fdc02
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 16 14:03:17 2025 -0700
Bugfix: Allowable Eta values in CVodeSetEtaFixedStepBounds (#706)
The docs state that `eta_max_fx >= 1.0` is valid, but the code checks for
`eta_max_fx > 1.0`. `1.0` should be allowed (similarly for `eta_min_fx`).
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
Co-authored-by: Steven Roberts <roberts115@llnl.gov>
commit 838669cf6f9c7d0d2ee623001d60807d963680c9
Author: Steven Roberts <roberts115@llnl.gov>
Date: Mon Jun 16 13:34:51 2025 -0400
Feature: Remove ARKodeSetCFLFraction cfl_frac restriction (#714)
Allow for CFL values greater than 1
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 396b71a1fcfdd3eef9a43be86fd01146e3adb8e7
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 16 08:39:32 2025 -0700
Bugfix: Compensated summation and number of recomputes (#716)
This PR enables us to use compensated summation of `tcur` in any of the
ARKODE modules and fixes the "nrecomputes" accumulator in the
`SUNAdjointStepper`.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 619d3959fe62d5500835d036a428c2ba0085ae3f
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Jun 2 17:49:34 2025 -0700
Build(deps): Bump docker/build-push-action from 6.17.0 to 6.18.0 (#712)
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
commit 2edb5aa9ff54a99a42df4c73b983e5ded3d2ac1f
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Fri May 23 13:59:50 2025 -0700
Build(deps): Bump docker/build-push-action from 6.16.0 to 6.17.0 (#707)
Bumps docker/build-push-action from 6.16.0 to 6.17.0.
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
commit d8b7f2cf669ed991ed785b91743c4275b5b01fbc
Author: Mustafa Ağgül <33010171+maggul@users.noreply.github.com>
Date: Fri May 23 11:32:45 2025 -0500
Docs: Fix math formatting in SUNAdjoint Introduction (#708)
Add missing directive
commit 07d21c2c5ae33211a9a2fafd8eac56de5582dce0
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue May 20 09:56:53 2025 -0700
Bugfix: Set adjMallocDone flag on AdjFree methods (#704)
Fixed segfaults in `CVodeAdjInit` and `IDAAdjInit` when called after adjoint memory has been freed.
commit 8e0da93f611bd3254719ada586e8c276628711eb
Author: Cody Balos <balos1@llnl.gov>
Date: Fri May 16 14:33:58 2025 -0700
Docs: Fix default value of eta fixed step upper bound in arkode math section (#705)
The default value was changed to `1.0` in ARKODE v6.3.0 (SUNDIALS v7.3.0)
commit d1e07340e760f221ff1bf1f404734e81d2f9811d
Author: David Gardner <gardner48@llnl.gov>
Date: Wed May 7 17:28:50 2025 -0700
Maintenance: Ignore python formatting in blame (#701)
Ignore formatting updates from #699 in blame
commit f4dd677103170d9eef53b1237aac4ad438a094a4
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed May 7 14:46:22 2025 -0700
Tools: Separate MRI logging data by level (#698)
Add option to extract MRI logging data separated by level
commit b166f03e29852a17fec5747cb64c4c986f24d42b
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed May 7 11:08:47 2025 -0700
Maintenance: update python formatting (#699)
Format all python files using Spack style with black
commit 83478e706d41ac21465b85b0feca8cf1f5ce7834
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue May 6 09:04:25 2025 -0700
Docs: Add warning for users to free flag strings (#700)
Note sure if the warning or note directive is preferable for this.
commit 0da4892ea1ee65e78eea44ac201aa0c4a35501d3
Author: Cody Balos <balos1@llnl.gov>
Date: Mon May 5 17:10:03 2025 -0700
turn on more ginkgo tests
commit b01225c594b7a6931d860281f1421ff87f825f26
Author: Cody Balos <balos1@llnl.gov>
Date: Mon May 5 16:56:53 2025 -0700
move sundials_logger_impl.h to priv so we can access in header only impls
commit 4992d38bd49a222261c6d81ec8a82e9b35bd1929
Author: Cody Balos <balos1@llnl.gov>
Date: Mon May 5 16:54:34 2025 -0700
fix scaling
commit de123eaecc27e1a33428e9319c713f8513ac8814
Author: Cody Balos <balos1@llnl.gov>
Date: Mon May 5 14:19:01 2025 -0700
remove ell test
commit 67062a30b622e86721eed88d5e99f86cb9c10381
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Sun May 4 14:39:43 2025 -0700
Build(deps): Bump docker/build-push-action from 6.15.0 to 6.16.0 (#697)
commit eba8db3d1e856db0d221427eda8ea8a0ce967ef9
Author: Cody Balos <balos1@llnl.gov>
Date: Fri May 2 15:57:39 2025 -0700
fix dense case
commit 96333052eefab3505ada044b9de27c248121a848
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Apr 29 17:09:44 2025 -0700
[wip] try multiple matrix format and batch solver co,bos
commit 255c45edd37123a86febc2a1323601e696742d24
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Apr 29 17:09:20 2025 -0700
use sunindextype
commit 41d1bb7ce08f0d9f81071ce90a56e836685c4745
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Apr 29 15:08:23 2025 -0700
fix compilation errors
commit 5d38db6cee5a0a4ad542298408aa5452941e1bae
Merge: 823623cfc 70ef60926
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Tue Apr 29 13:20:56 2025 -0700
Merge remote-tracking branch 'origin/develop' into feature/ginkgo-batched
commit 70ef609268b14de0a4dea0952f4b5a0ab6921cc1
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed Apr 16 09:27:59 2025 -0700
Docs: Minor formatting fixes in docs (#691)
Fix typos in docs
commit b6c68f835f656d254a84e2223500852bf01b67ee
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Apr 15 08:45:31 2025 -0700
Bugfix: Fix spacing in some IDA(S) error messages (#690)
Add space after error message time in IDA(S)
commit 295f47ff9889dd97fabdd26a21b971ecd71b3653
Author: Cody Balos <balos1@llnl.gov>
Date: Sun Apr 13 21:33:36 2025 -0700
Bugfix: Fix Caliper compile test (#688)
Fixed a CMake bug that would cause the Caliper compile test to fail at configure time.
------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit e3b56f0336b86a7f6e08939e104fcc25cd54d051
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Apr 8 07:03:04 2025 -0700
Bugfix: CVODE tarscript (#686)
Add missing `.sh`
commit ef498ea0cc674ea413e4dec25c94d39025bc0293
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Apr 7 13:11:27 2025 -0700
Maintenance: Start new release cycle (#685)
Update recent changes for next release cycle
commit e941546af1a5b5e492dcac0a1872540e9961c556
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Apr 7 06:54:19 2025 -0700
Release: v7.3.0 (#684)
SUNDIALS Release v7.3.0
commit 3d2f7744e786bec549babc1020fbd442612aa004
Author: Steven Roberts <roberts115@llnl.gov>
Date: Fri Apr 4 10:46:29 2025 -0700
Feautre: Update ARKODE adaptivity controller defaults (#565)
Updated adaptivity controller defaults
- No deadzone
- Bias: 1.0
- Safety factor: 0.9
- Adjustment: 0
- I controller
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
Co-authored-by: Daniel R. Reynolds <reynolds@smu.edu>
Co-authored-by: Daniel R. Reynolds <dreynolds@umbc.edu>
commit 2a817e705bc891c4201230bbdbcfc23979d6a570
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Apr 2 17:35:52 2025 -0700
Feature: ASA core modules and ERK discrete adjoint support (#641)
Add the core modules for adjoint sensitivity analysis and add
discrete adjoint capability for ERK methods in ERKStep and
ARKStep modules in ARKODE.
---------
Co-authored-by: Steven Roberts <roberts115@llnl.gov>
Co-authored-by: David Gardner <gardner48@llnl.gov>
Co-authored-by: Daniel R. Reynolds <reynolds@smu.edu>
commit 06d44a2c3809e8d3bcdcdca139adf2052518d0bd
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Apr 1 20:08:56 2025 -0700
Feature: CVODE Resize History (#678)
Add support for resizing CVODE and CVODES when solving initial value
problems where the number of equations and unknowns changes over time.
Resizing requires a user supplied history of solution and right-hand
side values at the new problem size.
commit dbe9d95fa867fe5ffe3125a45760ff5cab0bac61
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Apr 1 14:25:41 2025 -0700
CI: Fix mingw32 tests (#683)
[MINGW-packages](https://github.com/msys2/MINGW-packages) dropped
support OpenBLAS
(msys2/MINGW-packages@609f024a4ab22aed8fa77f63cc27e50cfb489499) and
SuiteSparse
(msys2/MINGW-packages@c5ee4e8ee5a17e8d160f967ba74827dfe2b520ca) on
mingw32. These packages are still available for mingw64.
commit 3494706c093837b3d30677a62c742f33ce9a7339
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Mar 31 07:06:27 2025 -0700
Feature: Anderson adaptive damping and depth (#679)
Add support in KINSOL for setting a user-supplied functions to compute
the damping factor and depth in fixed-point or Picard iterations.
commit 8c684cb278d9902aa8b5d72ffc7d77da50f2ceea
Author: Steven Roberts <roberts115@llnl.gov>
Date: Sat Mar 22 15:31:57 2025 -0700
Bugfix: Resizing MRI (#677)
Fix bug where trying to resize an MRI method leads to an erroneous
"Unable to resize vector" error.
---------
Co-authored-by: David J. Gardner <gardner48@llnl.gov>
commit aba7df67f83fd3d94e54c9927228edff0bac0c94
Author: Chris Vogl <vogl2@llnl.gov>
Date: Sat Mar 22 12:50:15 2025 -0400
Examples: Corrected default values in ark_harmonic_symplectic help message (#676)
The default values listed in help message are not what is used in the
code.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 71a480a419e39c22ae3cc2939be25785b721f17d
Author: Steven Roberts <roberts115@llnl.gov>
Date: Fri Mar 21 09:11:53 2025 -0700
Feature: Improve precision of some RK coefficients (#675)
Improved the precision of the coefficients for
`ARKODE_ARK324L2SA_ERK_4_2_3`,
`ARKODE_VERNER_9_5_6`,
`ARKODE_VERNER_10_6_7`,
`ARKODE_VERNER_13_7_8`,
`ARKODE_ARK324L2SA_DIRK_4_2_3`, and
`ARKODE_ESDIRK324L2SA_4_2_3`.
---------
Co-authored-by: David J. Gardner <gardner48@llnl.gov>
commit 47af768f6c2ee279f7493bba6a577e7a34c43e14
Author: Steven Roberts <roberts115@llnl.gov>
Date: Thu Mar 20 09:59:22 2025 -0700
Deprecate Work Space Functions (#669)
Deprecate all work space functions for removal in version 8.0.0
-----
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit d3fdca38e8e4a953d938e672f13743da63fa398a
Author: Harmen Stoppels <harmenstoppels@gmail.com>
Date: Wed Mar 19 17:42:21 2025 +0100
Maintenance: spack v1.0 support (#673)
Spack v1.0 will parse `pkg %gcc +foo` as "pkg with direct dependency gcc
with variant foo enabled" instead of "pkg with variant foo enabled and
compiler gcc". Reorder as `%foo +bar` -> `+bar %foo` to be compatible
with Spack v0.x and v1.0.
commit a5c62e6ed2f61985c91afdfe449f66c6da0d33d1
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Mar 18 17:25:07 2025 -0700
Feature: Fix Adaptivity for Small Errors or no CFL (#548)
The error floor parameter used in the controllers could cause an
error overestimation, particularly for the first step. Use I controller
for initial steps with insufficient history.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 05f019f03b28129577cb723883b95d96743d559e
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Mar 17 08:15:32 2025 -0700
CI: Windows Intel Ninja Test (#672)
Update Intel compiler version to fix CI failures with Windows + Intel +
Ninja
commit 034e1e30c2ba9344ee1329abd174189f05978522
Author: Steven Roberts <roberts115@llnl.gov>
Date: Sun Mar 16 12:31:30 2025 -0700
Docs: Fix typo in SplittingStep description (#670)
commit 0f4d5ae8ff3fca36ea5deeef0af6e0465d17fc01
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue Mar 11 09:29:19 2025 -0700
Build(deps): Bump docker/build-push-action from 6.13.0 to 6.15.0 (#668)
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commit 3344daa29d990004c3fcacd85aa8f25c1338fe02
Author: Steven Roberts <roberts115@llnl.gov>
Date: Fri Feb 28 17:12:42 2025 -0800
Docs: Fix summation bound (#666)
Fix summation bound in operator splitting docs
commit 6cb302c90379b0f18436ffef0fcdb08e97a57ef7
Author: Chris Vogl <vogl2@llnl.gov>
Date: Wed Feb 12 12:36:37 2025 -0500
Docs: Fix typo in table description (#664)
Add "default" to the docs for the Yoshida Butcher Table constant
description.
commit 35d6d24d46c879cb89f7adba610f9381bf8516d5
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed Feb 12 06:48:18 2025 -0800
Feature: Update default ARKODE methods (#547)
Update the default RK tables in ARKODE:
- ARK order >2: Follows the recommendations in the conclusion of
https://doi.org/10.1016/j.apnum.2018.10.007
- ERK order 4: Improved principal error and embedded quality metrics
- ERK order 5: Improved principal error and embedded quality metrics
- ERK order 8: Switch to a method designed for local extrapolation mode,
likely better principal error.
- DIRK order 2: Improved principal error, L-stability, and stage order 2
- DIRK order >2: Follows the recommendations in the conclusion of
https://doi.org/10.1016/j.apnum.2019.07.008
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 51087e02d0a67ec29d5035858e1ceec1592df3d2
Author: Daniel R. Reynolds <reynolds@smu.edu>
Date: Fri Feb 7 16:16:32 2025 -0600
Bugfix: Python plotting script (#663)
Removes an incorrect "sanity check" from python plotting script
so it works with serial and parallel output files.
commit b0cb581f324b46aa2906f39a03aa73a8c400bf34
Author: Mustafa Ağgül <33010171+maggul@users.noreply.github.com>
Date: Wed Feb 5 19:23:41 2025 -0600
Docs: fix typo in README and in a function input argument (#661)
Remove small space due to inconsistent latex rendering of README
Correct docs for LinearCombinationVectorArray
commit 0725fdbc00f8b5c5f8c6b8128f30a4702d18e48a
Author: Steven Roberts <roberts115@llnl.gov>
Date: Fri Jan 31 07:25:31 2025 -0800
Bugfix: Fix return value in ARKodeSetFixedStep (#659)
Previously success was always returned, even if an error occurred
commit 3e3c999274c02e0e5d86054e8a34b61203485cfa
Author: Chris Vogl <vogl2@llnl.gov>
Date: Fri Jan 31 09:16:19 2025 -0500
Maintenance: Typo in Operator Splitting Example (#653)
Fix typo in error check
commit 294361e7f6c9a9d8fd67f54b6eb7f0b5114551da
Author: Mustafa Ağgül <33010171+maggul@users.noreply.github.com>
Date: Thu Jan 30 20:39:59 2025 -0600
Maintenance: Fixing incorrect function name returns in check_flag calls (#658)
Some of the `check_flag` calls in the LSRK examples were not returning
the correct function names.
commit f33b6d7abc5cdef8d5d766b620e23e45b352b988
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Jan 28 20:49:58 2025 -0800
CI: Simplify addressing of CI errors (#657)
Uniquely names artifacts for a matrix of jobs to so there's no conflicts
The changes will allow us to get out files across all logging levels and
precisions with one run rather than repeated runs and updates.
commit b2db253c00970c48c273e991ad4223dc55769a72
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Jan 28 16:43:27 2025 -0800
Bugfix: Correct time label in log parser (#656)
Fix time key in get_history
commit 8e3df317810a34fb539835f4542238e074044333
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Jan 28 15:06:07 2025 -0800
Docs: Fix Shu-Osher Butcher table entry (#655)
Fix typo in Shu-Osher-3-2-3 ERK method table docs
commit e9e8f5cf1e55991e61740c0b9c9b5f5c6d11af17
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Jan 27 16:32:33 2025 -0800
Build(deps): Bump docker/build-push-action from 6.12.0 to 6.13.0 (#654)
Bumps
[docker/build-push-action](https://github.com/docker/build-push-action)
from 6.12.0 to 6.13.0.
<details>
<summary>Release notes</summary>
<p><em>Sourced from <a
href="https://github.com/docker/build-push-action/releases">docker/build-push-action's
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<blockquote>
<h2>v6.13.0</h2>
<ul>
<li>Bump <code>@docker/actions-toolkit</code> from 0.51.0 to 0.53.0 in
<a
href="https://redirect.github.com/docker/build-push-action/pull/1308">docker/build-push-action#1308</a></li>
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Merge pull request <a
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<li><a
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chore: update generated content</li>
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chore(deps): Bump <code>@docker/actions-toolkit</code> from 0.51.0 to
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commit 32b87ca4860998806d9ac84602f5733f1b5dc9e3
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jan 23 13:44:18 2025 -0800
CMake: Add a macro to wrap add_executable (#651)
Add sundials_add_executable macro to easily include/exclude
examples with complex values
commit 7c540be32e2c89b568215c25f4e1fd497ec617a1
Author: Daniel R. Reynolds <reynolds@smu.edu>
Date: Wed Jan 22 12:03:30 2025 -0600
Reorganized organization of checkNvector routines (#647)
Clean up how ARKODE and its steppers check for required and optional
N_Vector routines.
1. Stepper-specific N_Vector operation checks have been removed.
2. ARKODE performs an initial check on the supplied N_Vector for
operations that are always required.
3. Individual ARKODE utilities perform their own N_Vector checks when
they are configured.
4. ARKODE then performs a final check after user configuration is
complete to check any remaining N_Vector operation requirements.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 767679fb673cfb8a2567eb2c0ff3ba49745f5046
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed Jan 22 06:46:15 2025 -0800
Update copyright year (#636)
Update copyright year range for 2025
Add .sh suffix to tarscripts
Fix spelling errors with new codespell version
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit e34ff3d7c811cc20bde7fea6cdd857c439a83dbb
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Build(deps): Bump docker/build-push-action from 6.11.0 to 6.12.0 (#650)
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Merge pull request <a
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chore: update generated content</li>
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chore(deps): Bump <code>@docker/actions-toolkit</code> from 0.49.0 to
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<li><a
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Merge pull request <a
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update bake-action to v6</li>
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commit cc5e58c72392635b8dc4f2fa657a526b9b8fe185
Author: David Gardner <gardner48@llnl.gov>
Date: Sat Jan 18 09:19:50 2025 -0800
Docs: cleanup install guide (#637)
* Separate sections for installing with Spack and CMake
* Co-locate Linux, Windows, and HPC install instructions in CMake
section
* Remove `ccmake` steps to focus on simpler `cmake` steps
* Create subsections for related CMake options
* Combine TPL sections with related TPL options
* Add cross-references to corresponding TPL modules
* Add configuration examples for all TPLs
* Combine addons section with CMake option
* Create subsections for table of headers and libraries
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* Remove duplicate text
---------
Co-authored-by: Steven Roberts <roberts115@llnl.gov>
commit 72b88cc51bc2847133c466c9f6215c35fa671602
Author: Steven Roberts <roberts115@llnl.gov>
Date: Sat Jan 18 08:19:28 2025 -0800
Maintenance: Remove unused macros (#644)
Add -Wunused-macros and -Wunused-local-typedefs with ENABLE_ALL_WARNINGS
--------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit f963373db52c9c5d19558f12f700e036c8c52a7f
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jan 17 16:25:05 2025 -0800
CI: Fix /autofix command (#646)
Currently, our `/autofix` command does not work because the jobs don't
have the 'write' permission. This will fix it, but not until the change
ends up in `main`.
This permission can be set globally too, but this is more secure.
commit 3f72e6cb9446aba3a92c67ac1c48edec14a19b0c
Author: David Gardner <gardner48@llnl.gov>
Date: Fri Jan 17 09:42:33 2025 -0800
CI: Add jobs to test PDF doc builds (#645)
Add CI jobs to build PDFs for the user guides, example docs, and install
guide
commit 7c90f5cf95639249b1086a0493d55eab7abbc88b
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed Jan 15 16:29:25 2025 -0800
Add macros for consistent sunrealtype formatting (#517)
Add SUN_FORMAT_E, SUN_FORMAT_G, and SUN_FORMAT_SG macros
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 87fef531fc3cc9da2b3e45ef345141151b573a54
Author: Daniel R. Reynolds <reynolds@smu.edu>
Date: Tue Jan 14 12:40:36 2025 -0600
Mustafa-contributor (#643)
This PR rectifies an omission from our last release, where we forgot to
update the lists of SUNDIALS contributors to include Mustafa Aggul (who
contributed the ARKODE LSRKStep module).
commit 517507bbf42af6eb5e190d9a77d3344942cbf7da
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Jan 14 08:31:19 2025 -0800
Bugfix: SUNDIALS_ENABLE_ERROR_CHECKS default value (#638)
Fix the behavior of `SUNDIALS_ENABLE_ERROR_CHECKS` so additional runtime
error checks are disabled by default with all release build types.
Previously, `MinSizeRel` builds enabled additional error checking by
default.
commit 1fb40c0e091eb7b103e1103b8990e1387bf78ccc
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Jan 13 23:59:16 2025 -0800
Build(deps): Bump docker/build-push-action from 6.10.0 to 6.11.0 (#639)
Bumps
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<li>Handlebar <code>defaultContext</code> support for
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Merge pull request <a
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ci(e2e): fix setup docker config</li>
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chore: update generated content</li>
<li><a
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chore(deps): Bump <code>@docker/actions-toolkit</code> from 0.46.0 to
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<li><a
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Merge pull request <a
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from crazy-max/named-context-handlebars</li>
<li><a
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Merge pull request <a
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from crazy-max/remove-buildkit-5561</li>
<li><a
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Revert "init buildkit-5561 workflow"</li>
<li><a
href="https://github.com/docker/build-push-action/commit/d1a4129c41bb3f92b731b33dc29cfe5f6cd9298f"><code>d1a4129</code></a>
chore: update generated content</li>
<li><a
href="https://github.com/docker/build-push-action/commit/49c623eaf82513814393adabc13bf2535384d735"><code>49c623e</code></a>
handlebar defaultContext support for build-contexts input</li>
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commit 792686d3347b1691c0bb100d9fdf78a18f119fd8
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jan 8 21:00:33 2025 -0800
Bugfix: guard zeroing of yerr with compensated sums check (#635)
Only zero yerr when compensated summation is enabled
-----
Co-authored-by: David J. Gardner <gardner48@llnl.gov>
commit f0d64a3d303ef3a5770e742219d9a95a600c8d3c
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Jan 7 00:18:39 2025 -0600
Docs: Fix install guide versions (#633)
Fix version numbers in the install guide
Fix scripts to automatically update version numbers
Fix typo in version changed directive
commit 51aaf9a477c7cfe764dc26e6194ad12fbb648d9a
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Dec 26 09:24:40 2024 -0800
Maintenance: Add sundials-downloads-tracker status badge (#631)
Adding a status badge for the workflow that tracks downloads in
https://github.com/sundials-codes/sundials-download-tracker. This will
make it readily apparent when there is an issue tracking downloads.
See https://github.com/sundials-codes/sundials-download-tracker/issues/1.
commit 52453fa94c343c7d3425b7531cbaead8f107a79f
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Dec 20 14:02:09 2024 -0800
Docs: Add release procedure notes, remove old steps (#630)
Update release checklist
-----
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 935d6a45cfe7f080bce30ab70ffb39859e7f8069
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Dec 20 12:06:14 2024 -0800
Maintenance: Start next release cycle (#629)
Update recent changes for next release cycle
commit 5c53be85c88f63c5201c130b8cb2c686615cfb03
Author: David Gardner <gardner48@llnl.gov>
Date: Fri Dec 20 10:05:18 2024 -0800
Release: 7.2.1 (#628)
SUNDIALS Release v7.2.1
---------
Co-authored-by: Cody Balos <cjbalos@gmail.com>
Co-authored-by: Daniel R. Reynolds <reynolds@smu.edu>
commit ab2f4ad730e87870981a2698e2b3ebd22493e94e
Author: David Gardner <gardner48@llnl.gov>
Date: Thu Dec 19 13:51:23 2024 -0800
CI: Update Testing Options (#625)
* Always enable testing
* Consistent naming of CMake testing options
* Add warnings/errors for some testing option combinations
* Add documentation for testing options
* Move testing README into testing docs
* Cleanup using default testing options
* Enable running test in containers without enabling development tests
* Simplify setting pre and post executable run commands/options in
sundials_add_test
* Remove redundant Jenkins tests
* Remove precision dependent diff option in unit tests
commit 6a615a9be4ac9a869ddb2c98ed712a280801b4ae
Author: David Gardner <gardner48@llnl.gov>
Date: Thu Dec 19 08:40:06 2024 -0800
Bugfix: RHS eval logic with certain IMEX methods (#627)
Fix a bug in ARKStep where an extra right-hand side evaluation occurs
each time step when enabling the ``ARKodeSetAutonomous`` option and
using an IMEX method where the DIRK table has an implicit first and is
not stiffly accurate. Fix a bug in counting the number of explicit RHS
evaluations in the ARKStep Dahlquist unit test.
---------
Co-authored-by: Daniel R. Reynolds <reynolds@smu.edu>
commit 525c71bb5f5737007654287f3a2bacae5853ef8b
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Dec 16 17:42:03 2024 -0800
Maintenance: Remove snprintf wrappers (#623)
Remove wrappers that were originally part of a C90 workaround and
are no longer needed now that C99 is required
commit 4a534497108559cee004b696d3172dffa0215942
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Dec 16 14:13:48 2024 -0800
CMake: remove force variable macro (#624)
Remove mostly unused force_variable CMake macro
commit f0860810412f7d0fff0fd49c1ec884c16cf6d01e
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Dec 16 10:00:56 2024 -0800
Docs: Separate sections (#626)
Create separate sections for documenting source code and documentation
in the developer guide
commit eb4c4da8823cc3b07dd5a537cdc51295bf39d617
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Dec 12 11:09:39 2024 -0800
CI: Separate module unit tests from examples (#602)
Move vector, matrix, linear solver, and nonlinear solver tests to unit test directory
-----
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 864e31f6df78d777af6cdeefc83c7970cfa53162
Author: David Gardner <gardner48@llnl.gov>
Date: Wed Dec 11 16:14:38 2024 -0800
Maintenance: Start next release cycle (#622)
Updates to start the next release cycle on develop
commit 0eff39663606f2ff280c4059a947ed62ae38180a
Author: David Gardner <gardner48@llnl.gov>
Date: Wed Dec 11 07:27:48 2024 -0800
Release: 7.2.0 (#620)
SUNDIALS Release v7.2.0
commit 545db2ab5afd7f4b0f556503b461d318c2784c0f
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Dec 10 18:49:43 2024 -0800
Feature: Logging Updates (#501)
Follow on to utilities added in #499
* Ma…
balos1
added a commit
that referenced
this pull request
Sep 17, 2025
commit e2502c693305270247547f5b448ba25562bc53f4
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Sep 16 17:08:08 2025 -0700
fix all of the nullable args in set functions
commit 509fac2bfaa392ac70c506d5ff37dc34f4e0cc24
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Sep 16 16:27:14 2025 -0700
ensure user data args are all consistent in idas, cvodes and kinsol
commit c17fc6afe394d6dc1c6f7c3acf43a6a0845fe056
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Sep 16 15:58:48 2025 -0700
add kinsol interface
commit 7b10df9dec01f98db385273992200e9ec29203a1
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Sep 16 12:39:50 2025 -0700
fix CVode SetPreconditioner and SetJtimes nullables
commit c7faa9d62bc449adfbff9be16adffb6b7a35daa7
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Sep 16 12:11:57 2025 -0700
test IDAS
commit c2dcf3a7ff1211f94a8669ffc48ed09dd3c2fe53
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Sep 5 16:58:00 2025 -0700
interface idas
commit 2c795e79b3799c31c7bc2fdc902a2b82c881a592
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Sep 3 16:07:56 2025 -0700
use macros to simplify binding code for arkode
commit f25ffc5cb63dfe6934bcc54809684eb2d1b7dc7d
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Sep 3 16:00:04 2025 -0700
remoive unused typecaster
commit f30182bb219352ce373758f77dd56acab1dea22a
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Sep 3 15:56:34 2025 -0700
ignore GetCurrentState functions
commit 842b08681c32a99f8a203d9ffb150ead4072ca0d
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Aug 29 16:48:46 2025 -0700
allow for FILE*
commit e282a5eea87e18c289a67c606dd2c3341020bafd
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Aug 29 16:42:12 2025 -0700
fix SUNDIALSFileOpen and SUNDIALSFileCLose names
commit fc8b74a63cd9ba711afffaf8abbae5cd2cdae6ff
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Aug 29 14:51:01 2025 -0700
fix splittingstep
commit df21680bc2d6001e5032b6c2f51d89c4d11cc322
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Aug 26 16:00:24 2025 -0700
add placeholder test files
commit fd2f99b4209c6c08655097a99e6e00e05ca9a6b3
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Aug 26 15:55:33 2025 -0700
fix mristepinnerstepper and sunstepper
commit cc7303c99cfb43babf31ae5e5a9e93c0bc3de977
Author: Cody Balos <balos1@llnl.gov>
Date: Tue Aug 26 10:29:56 2025 -0700
wip mristepinnerstepper corruption
commit fc300924e055d977c8a54d3a724ec75d520c351a
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Aug 25 14:02:36 2025 -0700
formatting
commit 6abb0b2b9241319bc185c9a41619172de8e701db
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Aug 25 14:02:29 2025 -0700
add MRIStepInnerStepper [wip]
commit 8f2838ca8b7aad7dc6e2dfd6c2db3b456a0c6e3d
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Aug 21 15:15:55 2025 -0700
fix arkode butcher table interface
commit a5ee33aacf2034b80ebca5e8e68ef4aba1b650c1
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Aug 21 14:52:17 2025 -0700
dont interface struct members as rw
commit 7483ce18d4f94ccd1425d2956af653b9f1cc4f9a
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Aug 21 13:03:32 2025 -0700
handle arrays of vectors and sunrealtype as arrays
commit 80be6db6dd6d8264680b19a3193ad47ce95a1552
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 16:30:32 2025 -0700
regen arkode
commit 223c0671ded273c3c3984429490149085d4b3dc0
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 16:29:52 2025 -0700
fix import
commit c0fdfd2797c4f52616c4682dcea0de853757adcf
Merge: c999414fa fc8ed9c23
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 16:29:01 2025 -0700
Merge remote-tracking branch 'origin/develop' into feature/python-nanobind
commit c999414fa0dce8cdf2a57ff4b1badd21f8c2f55f
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 16:28:21 2025 -0700
rename
commit 2eccc50829c37ceb4b4ea7b1acec1c6f85e0ed17
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 16:27:57 2025 -0700
rename
commit 67be6c3ee74162f2f44b7ef6935b0d6c8888156f
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 16:25:31 2025 -0700
reorganize generator extensions
commit 42ead1c413237e11ed86b4c9d8e06b4f88b71ea3
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 15:56:22 2025 -0700
a few fixes
commit abf3945b1b8acba443ce2de54f5bcbdcff5e1fc7
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 15:34:11 2025 -0700
missing include
commit 31d6a614763684d5bb4744255183692c985e0bde
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 15:30:52 2025 -0700
allow N_VLinearCombination
commit 3a074cbce82b23e5bca2625fc6b64730af35402d
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 15:23:22 2025 -0700
format
commit 29a7ab823d01865aab6ec943b89ebdb991e6955f
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 15:23:11 2025 -0700
replace instances of sunrealtype* and sunrealtype** that are arrays in include/sundials
commit 8b77ed254102d563008450cb98c93781ffad907c
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 14:52:44 2025 -0700
use sunrealtype1d in cvodes
commit 86c969510968ab3f0ec827376cff5fffda0c3b1b
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 12:18:13 2025 -0700
exclude CVodeSetMonitorFn
commit 4f5d29f2dd50a3bcfa19609552003b017bdb2bdd
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 12:16:05 2025 -0700
refine exclusions so we dont exclude things inadvertently
commit a1f43b2ac4fbbd61fa874ac836a9c70fffba63d4
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 12:07:05 2025 -0700
wrap CVodeQuadInit
commit 5cb41d4569f800f7dd320bf51b051b7c367766ba
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 11:47:02 2025 -0700
move cvode adjoint fn pointers to their own struct
commit 91aad4c47f0dda368914e5b92e3c67188841d025
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 11:42:59 2025 -0700
add CVodeSetOwnUserDataB
commit 41d29bd21a8e0bb6dc99a747029ed0fa1d785fd7
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 11:34:45 2025 -0700
add CVodeQuadInitBS
commit dc2cca66beb20167be399df46497f47b442a536a
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 30 11:27:11 2025 -0700
enable an ASA example of CVODES
commit fc8ed9c2358cbc70d4a5c84d84a1b621b66a8146
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jun 30 10:55:08 2025 -0700
Bugfix: Add MRI H-Tol to Fortran module, fix segfault with nested MRI methods (#734)
Fix a CMake bug where the MRI H-Tol controller was not included in the
ARKODE Fortran module.
Fix a bug in MRIStep where a segfault occurs when an MRI coupling table
is not explicitly set and an MRI integrator is nested inside another MRI
integrator.
commit 4f8c313d4c9b3d1586d9984655bce7921193a581
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jun 30 06:48:52 2025 -0700
CI: Enable unit tests in GitLab (#735)
* Enable unit tests in GitLab CI with output comparisons disabled.
* Fix default logging level in spack package file
* Update error handler tests for different logging levels
commit 4463ced560e06cb5b5095cac69a6289e0ea537df
Author: Cody Balos <balos1@llnl.gov>
Date: Sat Jun 28 01:41:38 2025 -0700
comment
commit 29ed5207de14f3877f3b80afe391d0ff03340b84
Author: Cody Balos <balos1@llnl.gov>
Date: Sat Jun 28 01:39:54 2025 -0700
progress on vector array args
commit a43d81acee1d25a031afb524fa4b4782bf3e0c6e
Author: Cody Balos <balos1@llnl.gov>
Date: Sat Jun 28 00:18:16 2025 -0700
move some functions in generate to extensions
commit b1f7daab08b862262754aea020c0bd130e176fec
Author: Cody Balos <balos1@llnl.gov>
Date: Sat Jun 28 00:17:08 2025 -0700
change long int to long with preprocess function
commit ffa6394c6a6c9f7dad0b954b7db5db30aa502433
Author: Cody Balos <balos1@llnl.gov>
Date: Sat Jun 28 00:14:44 2025 -0700
Revert "long int --> long in arkode deprecated headers"
This reverts commit 078a7588dd450e9847e0ec913526264efbb1a01f.
commit 8cbdd18bf7dc89ad841acde4451503f173228aad
Author: Cody Balos <balos1@llnl.gov>
Date: Sat Jun 28 00:14:33 2025 -0700
Revert "long int --> long"
This reverts commit 1e1f4ec61ab19c5d434f1516ecbc2565d9201072.
commit d3d4816ca52543c1e5a9f2a4eaab2ec91c689f47
Author: David Gardner <gardner48@llnl.gov>
Date: Fri Jun 27 12:14:17 2025 -0700
Bugfix and CI: Fix SUNMemoryHelper_CopyAsync stream and update jenkins ginkgo version (#733)
* Fixed a bug in the CUDA and HIP implementations of
`SUNMemoryHelper_CopyAsync` where the stream was not set
* Update the ginkgo install used in the Jenkins CI to `@master` which
currently corresponds to v1.9.0
* Check for Ginkgo 1.9.0 or newer in CMake
* Default to C++17 when Ginkgo is enabled
* Update GitLab to use C++17
* Enable CUDA warnings as errors when `ENABLE_WARNINGS_AS_ERRORS` is
`ON`
* Remove C90 check when hypre is enabled
commit 4b1483e51838172119b3e3c5486a043bdb696498
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 16:58:04 2025 -0700
minor updates
commit fb230ed49af36b115e0110749d4b7a2b59ad1cf4
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 15:50:56 2025 -0700
regen with long int to long change
commit 078a7588dd450e9847e0ec913526264efbb1a01f
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 15:50:09 2025 -0700
long int --> long in arkode deprecated headers
commit 1e1f4ec61ab19c5d434f1516ecbc2565d9201072
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 15:43:20 2025 -0700
long int --> long
commit 8f062c0d058f5a3da3ae110e73615291eade43e8
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 15:39:15 2025 -0700
bind Get functions that use inplace modification
commit a8f7004aea6efd60812bb1e07cdf3d38f02f87c4
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 14:57:35 2025 -0700
fix SetLinearSolver in arkode
commit dc2d3a45248fdd85b092f1540d7421ba5ce28e97
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 14:09:46 2025 -0700
wrap cvodes basic capability
commit bb93bbb220c02c0ec09ec3b0f2e2f4097c178836
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 11:25:39 2025 -0700
Docs: Update CVODE examples guide intro (#730)
Thank you Alan Hindmarsh for the updates.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit c7c8c3824b5ac939154ce580cecf247ff39f015a
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 26 10:55:45 2025 -0700
update gitlab ci spack version and ginkgo version (#729)
This updates spack version used in our GitLab CI testing so that we can
use a newer version of Ginkgo.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit b1fd6b5189428ba38102e2d7c77f2837c5d10b44
Author: Steven Roberts <roberts115@llnl.gov>
Date: Thu Jun 26 11:56:54 2025 -0400
Docs: Fix typos in adjoint description (#731)
Add missing * and adjust summation for adjoint description
commit 3b9fbd97a914be18f0940066f475f2b438270a26
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 17:05:41 2025 -0700
cvodes module
commit 6c6222ce248606b7f2393e97b485854989cfec67
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 16:34:24 2025 -0700
fix typo
commit d21e29e322b5c9e1ca463429067f3df0260b36bf
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 16:20:41 2025 -0700
make sure default value of own_user_data is SUNFALSE
commit 295933a2a7019c737b849305a8e6a27410007ec6
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 16:16:07 2025 -0700
add own_user_data feature
commit bcfc5f73194ca07cbf5eaa2d0499c4265d4cec14
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 15:47:45 2025 -0700
add view classes for each package memory
commit d4c8fb1cea8c5518633c4e9d7da15b0ddac6226a
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 15:05:13 2025 -0700
add lsrkstep domeig set function
commit f7f344e7dd68b8c9f76746dd87f0d7db2c612921
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 13:42:21 2025 -0700
zero out fn_table that is allocated
commit 29c1da6fa1c3e05d6d7018ff6832babfc6290d55
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 13:38:01 2025 -0700
allow user_data to be any position
commit b79267a3e7f3a26cc94068d4f706289b6aca54a3
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 13:34:47 2025 -0700
rename lsrkstep_rhs to lsrkstep_f
commit 026e1f362dd3b51f53074afcf5e94e11b1535d04
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 13:29:42 2025 -0700
dont generate LSRKStepSetDomEigFn
commit 25c504531b078bf3a6351a41de889cf60e8f939c
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 13:29:27 2025 -0700
formatting
commit 8be5cdf0e3dbb91b423119bae76172c5c4cbf35f
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 12:10:21 2025 -0700
some reogranization of tests
commit d4546da4248d9f7798a2cf8fda97cc1553a71309
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jun 25 10:34:26 2025 -0700
update build instructions
commit 444546fc28d188341d6d3a62346b3be492211355
Author: Mustafa Ağgül <33010171+maggul@users.noreply.github.com>
Date: Tue Jun 24 12:21:38 2025 -0500
Bugfix: Shared Library Versions (#724)
* fix shared library versions for oneMKL matrix and linear solver, PETSc SNES
* fix typos in docs and comments
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 8ea6d153486e752ec344b9c95aa4385604209ae0
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Jun 24 11:43:02 2025 -0400
Maintenance: Resolve a few small todo items (#723)
* Add SUNRsamesign and SUNRdifferentsign
* Use SUNRcopysign
-----
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 56088c9af254174c6a8bbe95d13b26dd460f8bec
Author: Timothy Bourke <tim@tbrk.org>
Date: Tue Jun 24 16:18:03 2025 +0200
Docs: Minor fixes (#720)
Correct function signature and default values
commit 0a94f8294a69495c0bbdc545c7b151dd082795b5
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Tue Jun 24 02:36:14 2025 -0700
add lsrkstep and sprkstep py tests
commit ef27409d8a99e0880bf1e3c5822cf72ac723f645
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Tue Jun 24 02:32:31 2025 -0700
interface lsrkstep and sprkstep
commit 57bde64e32b1db8087308de2b0113b5852a3e471
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Tue Jun 24 02:09:00 2025 -0700
interface set functions for user-supplied functions
commit 38ed0f3a912098153ec529c751b16aafac0fec5c
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Tue Jun 24 00:40:24 2025 -0700
create alloc functions
commit 472e833c040687530fd2a60029651916fe009974
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Tue Jun 24 00:31:20 2025 -0700
move mristep and sprkstep functions to deprecated header
commit 8eb983e2130b4f47ebcc6b1c1dc06c48f9b6d94b
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Tue Jun 24 00:27:25 2025 -0700
generate arkode
commit 31984c4c05511a5d261f28bec26eb01a91712c55
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Tue Jun 24 00:05:50 2025 -0700
make the function call wrapper code more slicker
commit 79e43ba9ac8088515ef2c22f93a258fdd2cb54da
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Jun 23 17:03:13 2025 -0700
Maintenance: Start next release cycle (#727)
Update recent changes for next release cycle
commit 9099e095bc52583137ca7b14e54c46d9c3db159b
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Mon Jun 23 16:04:16 2025 -0700
generate erkstep
commit adf57cfae13a4ac618cf9ea4758f0a1de759fe55
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Mon Jun 23 15:57:02 2025 -0700
generate more of arkode
commit bc91473ff1819808077a49a0f55ab6a3af960bd4
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Mon Jun 23 15:53:06 2025 -0700
setup proper callback handling for erkstep
commit c2c1a6c0d6d12ef988ad8813bf03a81c7820e126
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Mon Jun 23 14:51:53 2025 -0700
dont generate ARKodeSetUserData
commit 27cc79e74d810d245dbedb8f6b05228876c8f6f0
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Sat Jun 21 00:07:58 2025 -0700
use generate script for arkode
commit 610495510a1105a392b56078fdf79c74d0053dd8
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Fri Jun 20 23:55:45 2025 -0700
rename arkode files
commit 51289dbca46917bc742f9bf5c1dfe99c904027b7
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Fri Jun 20 23:46:06 2025 -0700
fix bindings for SUNErrCode
commit ba92418a1c97618fd71490c518f1bd564121a480
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 16:42:20 2025 -0700
use correct srml function
commit e5788975b449fd2217b554e7afe5991664a90e1f
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 16:40:06 2025 -0700
add option to dump srcml
commit 67d862df32ad7a7c97a5db967ddb488dc63bdd2a
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 16:30:12 2025 -0700
exclude C comments from generated code
commit f5248f81f4717a8d67f494c964cd2d8604e0e855
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 16:27:26 2025 -0700
allow SWIG blocks to processed
commit d0532e79fe232a86bb1fc35ca52b838bcf3e9748
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 16:09:21 2025 -0700
generate with newer litgen
commit 5daff55d1bf586e26140ad64d0e852e093724331
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 16:08:26 2025 -0700
fix paths of includes
commit 3fc4f5210ccba0b9fcc26967b32352f6ef2b51c7
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 16:08:19 2025 -0700
fix dependencies in toml
commit b2daa13aa2eecddcf21fc80e894ffbc3f1431441
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 15:18:38 2025 -0700
require at least python 3.9
commit cb163b350992391728189c6581bf3702d6301726
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 11:44:05 2025 -0700
bump
commit d397bf79a2cefad3abe9252a284339703fea60fc
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 10:46:03 2025 -0700
bump
commit 22eacac3afbfbbb35e8feeb1ef94c0e4533a9fd6
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 10:41:33 2025 -0700
enable ci wheel builds
commit 10a2f3fed7b01ac8415f08c8033a5074c76eaca6
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 10:32:26 2025 -0700
rename bindings directory to pysundials
commit a32f9a30d51f39fb80bdf0d16c89b0a04dfa5d0d
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 10:24:01 2025 -0700
change name of python project to pysundials-official
commit 8014b084b6d07127a3b17fa3a2be8799a40142ba
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 09:58:30 2025 -0700
allow editable builds
commit 7a64ee0f95350dc1ecc1e71ad9412bbdb6bb2eb9
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 09:31:01 2025 -0700
rename python test directory
commit 50b9474f979bd035a0965949486438d01245857b
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 01:06:07 2025 -0700
add dependencies to pyproject.toml
commit f520bc37ab8715b359fc7d0f2fba627f7b49d2f3
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 00:59:36 2025 -0700
fix gitignore
commit cc1c079ce604981ae2db0fd7960426ad8bb2de97
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Jun 18 00:52:06 2025 -0700
reorganize bindings directory and enable pip install
commit fec710afbc9b9d8f0366ae71497911d06e8bf716
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Tue Jun 17 14:20:59 2025 -0700
add a pytest test target
commit c3ff4663573953facb33eb026dd5d80444ecedc8
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Jun 17 09:11:04 2025 -0700
Release: v7.4.0 (#718)
SUNDIALS Release v7.4.0
commit ca371919f71c3894047b3e0bc2f1664f262fdc02
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 16 14:03:17 2025 -0700
Bugfix: Allowable Eta values in CVodeSetEtaFixedStepBounds (#706)
The docs state that `eta_max_fx >= 1.0` is valid, but the code checks for
`eta_max_fx > 1.0`. `1.0` should be allowed (similarly for `eta_min_fx`).
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
Co-authored-by: Steven Roberts <roberts115@llnl.gov>
commit 838669cf6f9c7d0d2ee623001d60807d963680c9
Author: Steven Roberts <roberts115@llnl.gov>
Date: Mon Jun 16 13:34:51 2025 -0400
Feature: Remove ARKodeSetCFLFraction cfl_frac restriction (#714)
Allow for CFL values greater than 1
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 396b71a1fcfdd3eef9a43be86fd01146e3adb8e7
Author: Cody Balos <balos1@llnl.gov>
Date: Mon Jun 16 08:39:32 2025 -0700
Bugfix: Compensated summation and number of recomputes (#716)
This PR enables us to use compensated summation of `tcur` in any of the
ARKODE modules and fixes the "nrecomputes" accumulator in the
`SUNAdjointStepper`.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit b4237bcb222e34f98a1b32534eaefc64a95ca406
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jun 13 16:48:00 2025 -0700
interface some of the error codes
commit d2caaee7f06feb2fa92b1bcc18d80420540217ac
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jun 13 16:38:03 2025 -0700
update cmake file for renamed files
commit c07feb9039ad8db901dc3f781eb1d6659a33ad3d
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jun 13 16:14:28 2025 -0700
name files pysundials
commit 986114420aab5ebe7706a0a8ba7077804c2e5162
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jun 13 16:10:24 2025 -0700
interfaces all pf sundials core now
commit 4f013705402825b9d1c121c05a8fd66ffd14ebdb
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jun 13 15:33:54 2025 -0700
use static Create methods
commit d8e82f2d4c3a8c5dfd46b1efad9a8c802e01b4d4
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jun 13 15:09:25 2025 -0700
add comments to generate.yaml
commit 04b4fa955b7e8b6b246dcb03ed91dd80595b2ecc
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jun 13 15:03:09 2025 -0700
sort generate.yaml
commit 93761c9549810512334b08b1ba999fe489a9cb19
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jun 6 17:05:41 2025 -0700
tests
commit 0193a52f95670a105451a111c44f8508c799a29c
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jun 6 17:05:35 2025 -0700
more bindings in core
commit 168f8c5b5579168769d14cbe3e0afaa0b8bbf425
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jun 6 16:39:23 2025 -0700
cmake tweaks
commit dcd87d5e661e717ae28f99a27764905799907ed2
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jun 6 16:30:02 2025 -0700
most of core is bound
commit f8f34f8f42b1cf9b78806d5b808679078348ef92
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 5 15:48:40 2025 -0700
more interfaces
commit db99d1a32e2d45ff54786c0e076741642020d51b
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 5 11:58:48 2025 -0700
add matrix interface
commit cbe7e3a0ada606369eb12ca71756d6f1b807f83b
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jun 5 11:33:13 2025 -0700
interface sundials_iterative.h
commit 619d3959fe62d5500835d036a428c2ba0085ae3f
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Jun 2 17:49:34 2025 -0700
Build(deps): Bump docker/build-push-action from 6.17.0 to 6.18.0 (#712)
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
commit 2edb5aa9ff54a99a42df4c73b983e5ded3d2ac1f
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Fri May 23 13:59:50 2025 -0700
Build(deps): Bump docker/build-push-action from 6.16.0 to 6.17.0 (#707)
Bumps docker/build-push-action from 6.16.0 to 6.17.0.
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
commit d8b7f2cf669ed991ed785b91743c4275b5b01fbc
Author: Mustafa Ağgül <33010171+maggul@users.noreply.github.com>
Date: Fri May 23 11:32:45 2025 -0500
Docs: Fix math formatting in SUNAdjoint Introduction (#708)
Add missing directive
commit 07d21c2c5ae33211a9a2fafd8eac56de5582dce0
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue May 20 09:56:53 2025 -0700
Bugfix: Set adjMallocDone flag on AdjFree methods (#704)
Fixed segfaults in `CVodeAdjInit` and `IDAAdjInit` when called after adjoint memory has been freed.
commit 8e0da93f611bd3254719ada586e8c276628711eb
Author: Cody Balos <balos1@llnl.gov>
Date: Fri May 16 14:33:58 2025 -0700
Docs: Fix default value of eta fixed step upper bound in arkode math section (#705)
The default value was changed to `1.0` in ARKODE v6.3.0 (SUNDIALS v7.3.0)
commit c0517fd0307a4d4c6a6776c9753b57645950cefc
Author: Cody Balos <balos1@llnl.gov>
Date: Wed May 14 00:27:46 2025 -0700
generate more code
commit e535376304eee49191bad89d3104b01ab66c430b
Author: Cody Balos <balos1@llnl.gov>
Date: Mon May 12 17:07:11 2025 -0700
generator updates
commit f32faf3ca5e23a98998bba14276842a5f063489c
Author: Cody Balos <balos1@llnl.gov>
Date: Mon May 12 16:56:40 2025 -0700
formatting
commit bb487aece131ba7d7def9b57fcb5667442b4d328
Author: Cody Balos <balos1@llnl.gov>
Date: Mon May 12 14:54:30 2025 -0700
cleanup
commit d5fe9e72a2f9d306ceb5b55d9b9199f81280806f
Author: Cody Balos <balos1@llnl.gov>
Date: Mon May 12 14:54:20 2025 -0700
delete unused bindings
commit 8c79a28f1dd3520ae9f6f9ccc2160c788aef07ca
Merge: 15aee6730 d1e07340e
Author: Cody Balos <balos1@llnl.gov>
Date: Mon May 12 14:52:49 2025 -0700
Merge remote-tracking branch 'origin/develop' into feature/python-nanobind
commit d1e07340e760f221ff1bf1f404734e81d2f9811d
Author: David Gardner <gardner48@llnl.gov>
Date: Wed May 7 17:28:50 2025 -0700
Maintenance: Ignore python formatting in blame (#701)
Ignore formatting updates from #699 in blame
commit f4dd677103170d9eef53b1237aac4ad438a094a4
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed May 7 14:46:22 2025 -0700
Tools: Separate MRI logging data by level (#698)
Add option to extract MRI logging data separated by level
commit b166f03e29852a17fec5747cb64c4c986f24d42b
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed May 7 11:08:47 2025 -0700
Maintenance: update python formatting (#699)
Format all python files using Spack style with black
commit 83478e706d41ac21465b85b0feca8cf1f5ce7834
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue May 6 09:04:25 2025 -0700
Docs: Add warning for users to free flag strings (#700)
Note sure if the warning or note directive is preferable for this.
commit 67062a30b622e86721eed88d5e99f86cb9c10381
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Sun May 4 14:39:43 2025 -0700
Build(deps): Bump docker/build-push-action from 6.15.0 to 6.16.0 (#697)
commit 15aee67302d6f2c0bd8cd0651816c61dfa831366
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Apr 25 12:35:54 2025 -0700
add more linear solver bindings
commit 0d85925a476729ef8897c2ec22563ae77b19ddda
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Apr 25 11:00:27 2025 -0700
add initial support for sunlinearsolver
commit b3498996236072506276d125ccf808247e269803
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Apr 24 16:46:22 2025 -0700
add ARKStepCreate (needs linear solvers to work with implicit)
commit 2f97e441a9cdf69a10ae915e761e895ec2924145
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Apr 24 16:16:51 2025 -0700
separate out arkode steppers into different files
commit 6fca7c5c0ad3987c929949456fcee4a3ffefd6fb
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Apr 24 16:06:44 2025 -0700
add lvalue ref constructor to ClassView
commit 6ac31a359599842526990f6f31fe13fc2484895f
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Apr 24 16:06:20 2025 -0700
reogranize test scripts
commit 6bfa5180ed7d096b5433786401a1a7621f1ca604
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Apr 24 14:27:52 2025 -0700
format
commit 24c3c70374df1e75692362caa6bccbf9c799db25
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Apr 24 14:22:15 2025 -0700
get it building and running clean again
commit de22a57bfe99d51815c8f4f29d73a28a70781cc6
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Apr 23 15:48:23 2025 -0700
change cmake option name
commit 0ce6fb761d34cb5ce73243ea4e6576dd838014c9
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Apr 23 12:37:01 2025 -0700
add another test
commit f0ced6e39a6c6906c35d015ec81b9b20749b7b04
Merge: c341452b7 70ef60926
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Wed Apr 23 09:59:48 2025 -0700
Merge remote-tracking branch 'origin/develop' into feature/python-nanobind
commit 70ef609268b14de0a4dea0952f4b5a0ab6921cc1
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed Apr 16 09:27:59 2025 -0700
Docs: Minor formatting fixes in docs (#691)
Fix typos in docs
commit b6c68f835f656d254a84e2223500852bf01b67ee
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Apr 15 08:45:31 2025 -0700
Bugfix: Fix spacing in some IDA(S) error messages (#690)
Add space after error message time in IDA(S)
commit 295f47ff9889dd97fabdd26a21b971ecd71b3653
Author: Cody Balos <balos1@llnl.gov>
Date: Sun Apr 13 21:33:36 2025 -0700
Bugfix: Fix Caliper compile test (#688)
Fixed a CMake bug that would cause the Caliper compile test to fail at configure time.
------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit e3b56f0336b86a7f6e08939e104fcc25cd54d051
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Apr 8 07:03:04 2025 -0700
Bugfix: CVODE tarscript (#686)
Add missing `.sh`
commit ef498ea0cc674ea413e4dec25c94d39025bc0293
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Apr 7 13:11:27 2025 -0700
Maintenance: Start new release cycle (#685)
Update recent changes for next release cycle
commit e941546af1a5b5e492dcac0a1872540e9961c556
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Apr 7 06:54:19 2025 -0700
Release: v7.3.0 (#684)
SUNDIALS Release v7.3.0
commit 3d2f7744e786bec549babc1020fbd442612aa004
Author: Steven Roberts <roberts115@llnl.gov>
Date: Fri Apr 4 10:46:29 2025 -0700
Feautre: Update ARKODE adaptivity controller defaults (#565)
Updated adaptivity controller defaults
- No deadzone
- Bias: 1.0
- Safety factor: 0.9
- Adjustment: 0
- I controller
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
Co-authored-by: Daniel R. Reynolds <reynolds@smu.edu>
Co-authored-by: Daniel R. Reynolds <dreynolds@umbc.edu>
commit 2a817e705bc891c4201230bbdbcfc23979d6a570
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Apr 2 17:35:52 2025 -0700
Feature: ASA core modules and ERK discrete adjoint support (#641)
Add the core modules for adjoint sensitivity analysis and add
discrete adjoint capability for ERK methods in ERKStep and
ARKStep modules in ARKODE.
---------
Co-authored-by: Steven Roberts <roberts115@llnl.gov>
Co-authored-by: David Gardner <gardner48@llnl.gov>
Co-authored-by: Daniel R. Reynolds <reynolds@smu.edu>
commit 06d44a2c3809e8d3bcdcdca139adf2052518d0bd
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Apr 1 20:08:56 2025 -0700
Feature: CVODE Resize History (#678)
Add support for resizing CVODE and CVODES when solving initial value
problems where the number of equations and unknowns changes over time.
Resizing requires a user supplied history of solution and right-hand
side values at the new problem size.
commit dbe9d95fa867fe5ffe3125a45760ff5cab0bac61
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Apr 1 14:25:41 2025 -0700
CI: Fix mingw32 tests (#683)
[MINGW-packages](https://github.com/msys2/MINGW-packages) dropped
support OpenBLAS
(msys2/MINGW-packages@609f024a4ab22aed8fa77f63cc27e50cfb489499) and
SuiteSparse
(msys2/MINGW-packages@c5ee4e8ee5a17e8d160f967ba74827dfe2b520ca) on
mingw32. These packages are still available for mingw64.
commit 3494706c093837b3d30677a62c742f33ce9a7339
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Mar 31 07:06:27 2025 -0700
Feature: Anderson adaptive damping and depth (#679)
Add support in KINSOL for setting a user-supplied functions to compute
the damping factor and depth in fixed-point or Picard iterations.
commit 8c684cb278d9902aa8b5d72ffc7d77da50f2ceea
Author: Steven Roberts <roberts115@llnl.gov>
Date: Sat Mar 22 15:31:57 2025 -0700
Bugfix: Resizing MRI (#677)
Fix bug where trying to resize an MRI method leads to an erroneous
"Unable to resize vector" error.
---------
Co-authored-by: David J. Gardner <gardner48@llnl.gov>
commit aba7df67f83fd3d94e54c9927228edff0bac0c94
Author: Chris Vogl <vogl2@llnl.gov>
Date: Sat Mar 22 12:50:15 2025 -0400
Examples: Corrected default values in ark_harmonic_symplectic help message (#676)
The default values listed in help message are not what is used in the
code.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 71a480a419e39c22ae3cc2939be25785b721f17d
Author: Steven Roberts <roberts115@llnl.gov>
Date: Fri Mar 21 09:11:53 2025 -0700
Feature: Improve precision of some RK coefficients (#675)
Improved the precision of the coefficients for
`ARKODE_ARK324L2SA_ERK_4_2_3`,
`ARKODE_VERNER_9_5_6`,
`ARKODE_VERNER_10_6_7`,
`ARKODE_VERNER_13_7_8`,
`ARKODE_ARK324L2SA_DIRK_4_2_3`, and
`ARKODE_ESDIRK324L2SA_4_2_3`.
---------
Co-authored-by: David J. Gardner <gardner48@llnl.gov>
commit 47af768f6c2ee279f7493bba6a577e7a34c43e14
Author: Steven Roberts <roberts115@llnl.gov>
Date: Thu Mar 20 09:59:22 2025 -0700
Deprecate Work Space Functions (#669)
Deprecate all work space functions for removal in version 8.0.0
-----
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit d3fdca38e8e4a953d938e672f13743da63fa398a
Author: Harmen Stoppels <harmenstoppels@gmail.com>
Date: Wed Mar 19 17:42:21 2025 +0100
Maintenance: spack v1.0 support (#673)
Spack v1.0 will parse `pkg %gcc +foo` as "pkg with direct dependency gcc
with variant foo enabled" instead of "pkg with variant foo enabled and
compiler gcc". Reorder as `%foo +bar` -> `+bar %foo` to be compatible
with Spack v0.x and v1.0.
commit a5c62e6ed2f61985c91afdfe449f66c6da0d33d1
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Mar 18 17:25:07 2025 -0700
Feature: Fix Adaptivity for Small Errors or no CFL (#548)
The error floor parameter used in the controllers could cause an
error overestimation, particularly for the first step. Use I controller
for initial steps with insufficient history.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 05f019f03b28129577cb723883b95d96743d559e
Author: David Gardner <gardner48@llnl.gov>
Date: Mon Mar 17 08:15:32 2025 -0700
CI: Windows Intel Ninja Test (#672)
Update Intel compiler version to fix CI failures with Windows + Intel +
Ninja
commit 034e1e30c2ba9344ee1329abd174189f05978522
Author: Steven Roberts <roberts115@llnl.gov>
Date: Sun Mar 16 12:31:30 2025 -0700
Docs: Fix typo in SplittingStep description (#670)
commit 0f4d5ae8ff3fca36ea5deeef0af6e0465d17fc01
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Tue Mar 11 09:29:19 2025 -0700
Build(deps): Bump docker/build-push-action from 6.13.0 to 6.15.0 (#668)
Bumps
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commit 3344daa29d990004c3fcacd85aa8f25c1338fe02
Author: Steven Roberts <roberts115@llnl.gov>
Date: Fri Feb 28 17:12:42 2025 -0800
Docs: Fix summation bound (#666)
Fix summation bound in operator splitting docs
commit 6cb302c90379b0f18436ffef0fcdb08e97a57ef7
Author: Chris Vogl <vogl2@llnl.gov>
Date: Wed Feb 12 12:36:37 2025 -0500
Docs: Fix typo in table description (#664)
Add "default" to the docs for the Yoshida Butcher Table constant
description.
commit 35d6d24d46c879cb89f7adba610f9381bf8516d5
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed Feb 12 06:48:18 2025 -0800
Feature: Update default ARKODE methods (#547)
Update the default RK tables in ARKODE:
- ARK order >2: Follows the recommendations in the conclusion of
https://doi.org/10.1016/j.apnum.2018.10.007
- ERK order 4: Improved principal error and embedded quality metrics
- ERK order 5: Improved principal error and embedded quality metrics
- ERK order 8: Switch to a method designed for local extrapolation mode,
likely better principal error.
- DIRK order 2: Improved principal error, L-stability, and stage order 2
- DIRK order >2: Follows the recommendations in the conclusion of
https://doi.org/10.1016/j.apnum.2019.07.008
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 51087e02d0a67ec29d5035858e1ceec1592df3d2
Author: Daniel R. Reynolds <reynolds@smu.edu>
Date: Fri Feb 7 16:16:32 2025 -0600
Bugfix: Python plotting script (#663)
Removes an incorrect "sanity check" from python plotting script
so it works with serial and parallel output files.
commit b0cb581f324b46aa2906f39a03aa73a8c400bf34
Author: Mustafa Ağgül <33010171+maggul@users.noreply.github.com>
Date: Wed Feb 5 19:23:41 2025 -0600
Docs: fix typo in README and in a function input argument (#661)
Remove small space due to inconsistent latex rendering of README
Correct docs for LinearCombinationVectorArray
commit 0725fdbc00f8b5c5f8c6b8128f30a4702d18e48a
Author: Steven Roberts <roberts115@llnl.gov>
Date: Fri Jan 31 07:25:31 2025 -0800
Bugfix: Fix return value in ARKodeSetFixedStep (#659)
Previously success was always returned, even if an error occurred
commit 3e3c999274c02e0e5d86054e8a34b61203485cfa
Author: Chris Vogl <vogl2@llnl.gov>
Date: Fri Jan 31 09:16:19 2025 -0500
Maintenance: Typo in Operator Splitting Example (#653)
Fix typo in error check
commit 294361e7f6c9a9d8fd67f54b6eb7f0b5114551da
Author: Mustafa Ağgül <33010171+maggul@users.noreply.github.com>
Date: Thu Jan 30 20:39:59 2025 -0600
Maintenance: Fixing incorrect function name returns in check_flag calls (#658)
Some of the `check_flag` calls in the LSRK examples were not returning
the correct function names.
commit f33b6d7abc5cdef8d5d766b620e23e45b352b988
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Jan 28 20:49:58 2025 -0800
CI: Simplify addressing of CI errors (#657)
Uniquely names artifacts for a matrix of jobs to so there's no conflicts
The changes will allow us to get out files across all logging levels and
precisions with one run rather than repeated runs and updates.
commit b2db253c00970c48c273e991ad4223dc55769a72
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Jan 28 16:43:27 2025 -0800
Bugfix: Correct time label in log parser (#656)
Fix time key in get_history
commit 8e3df317810a34fb539835f4542238e074044333
Author: Steven Roberts <roberts115@llnl.gov>
Date: Tue Jan 28 15:06:07 2025 -0800
Docs: Fix Shu-Osher Butcher table entry (#655)
Fix typo in Shu-Osher-3-2-3 ERK method table docs
commit e9e8f5cf1e55991e61740c0b9c9b5f5c6d11af17
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Jan 27 16:32:33 2025 -0800
Build(deps): Bump docker/build-push-action from 6.12.0 to 6.13.0 (#654)
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chore: update generated content</li>
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commit 32b87ca4860998806d9ac84602f5733f1b5dc9e3
Author: Cody Balos <balos1@llnl.gov>
Date: Thu Jan 23 13:44:18 2025 -0800
CMake: Add a macro to wrap add_executable (#651)
Add sundials_add_executable macro to easily include/exclude
examples with complex values
commit 7c540be32e2c89b568215c25f4e1fd497ec617a1
Author: Daniel R. Reynolds <reynolds@smu.edu>
Date: Wed Jan 22 12:03:30 2025 -0600
Reorganized organization of checkNvector routines (#647)
Clean up how ARKODE and its steppers check for required and optional
N_Vector routines.
1. Stepper-specific N_Vector operation checks have been removed.
2. ARKODE performs an initial check on the supplied N_Vector for
operations that are always required.
3. Individual ARKODE utilities perform their own N_Vector checks when
they are configured.
4. ARKODE then performs a final check after user configuration is
complete to check any remaining N_Vector operation requirements.
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 767679fb673cfb8a2567eb2c0ff3ba49745f5046
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed Jan 22 06:46:15 2025 -0800
Update copyright year (#636)
Update copyright year range for 2025
Add .sh suffix to tarscripts
Fix spelling errors with new codespell version
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit e34ff3d7c811cc20bde7fea6cdd857c439a83dbb
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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Build(deps): Bump docker/build-push-action from 6.11.0 to 6.12.0 (#650)
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chore: update generated content</li>
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chore(deps): Bump <code>@docker/actions-toolkit</code> from 0.49.0 to
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Merge pull request <a
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update bake-action to v6</li>
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commit cc5e58c72392635b8dc4f2fa657a526b9b8fe185
Author: David Gardner <gardner48@llnl.gov>
Date: Sat Jan 18 09:19:50 2025 -0800
Docs: cleanup install guide (#637)
* Separate sections for installing with Spack and CMake
* Co-locate Linux, Windows, and HPC install instructions in CMake
section
* Remove `ccmake` steps to focus on simpler `cmake` steps
* Create subsections for related CMake options
* Combine TPL sections with related TPL options
* Add cross-references to corresponding TPL modules
* Add configuration examples for all TPLs
* Combine addons section with CMake option
* Create subsections for table of headers and libraries
* Add CMake targets to tables
* Add missing headers and libraries
* Remove deprecated headers
* Remove duplicate text
---------
Co-authored-by: Steven Roberts <roberts115@llnl.gov>
commit 72b88cc51bc2847133c466c9f6215c35fa671602
Author: Steven Roberts <roberts115@llnl.gov>
Date: Sat Jan 18 08:19:28 2025 -0800
Maintenance: Remove unused macros (#644)
Add -Wunused-macros and -Wunused-local-typedefs with ENABLE_ALL_WARNINGS
--------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit f963373db52c9c5d19558f12f700e036c8c52a7f
Author: Cody Balos <balos1@llnl.gov>
Date: Fri Jan 17 16:25:05 2025 -0800
CI: Fix /autofix command (#646)
Currently, our `/autofix` command does not work because the jobs don't
have the 'write' permission. This will fix it, but not until the change
ends up in `main`.
This permission can be set globally too, but this is more secure.
commit 3f72e6cb9446aba3a92c67ac1c48edec14a19b0c
Author: David Gardner <gardner48@llnl.gov>
Date: Fri Jan 17 09:42:33 2025 -0800
CI: Add jobs to test PDF doc builds (#645)
Add CI jobs to build PDFs for the user guides, example docs, and install
guide
commit 7c90f5cf95639249b1086a0493d55eab7abbc88b
Author: Steven Roberts <roberts115@llnl.gov>
Date: Wed Jan 15 16:29:25 2025 -0800
Add macros for consistent sunrealtype formatting (#517)
Add SUN_FORMAT_E, SUN_FORMAT_G, and SUN_FORMAT_SG macros
---------
Co-authored-by: David Gardner <gardner48@llnl.gov>
commit 87fef531fc3cc9da2b3e45ef345141151b573a54
Author: Daniel R. Reynolds <reynolds@smu.edu>
Date: Tue Jan 14 12:40:36 2025 -0600
Mustafa-contributor (#643)
This PR rectifies an omission from our last release, where we forgot to
update the lists of SUNDIALS contributors to include Mustafa Aggul (who
contributed the ARKODE LSRKStep module).
commit 517507bbf42af6eb5e190d9a77d3344942cbf7da
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Jan 14 08:31:19 2025 -0800
Bugfix: SUNDIALS_ENABLE_ERROR_CHECKS default value (#638)
Fix the behavior of `SUNDIALS_ENABLE_ERROR_CHECKS` so additional runtime
error checks are disabled by default with all release build types.
Previously, `MinSizeRel` builds enabled additional error checking by
default.
commit 1fb40c0e091eb7b103e1103b8990e1387bf78ccc
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon Jan 13 23:59:16 2025 -0800
Build(deps): Bump docker/build-push-action from 6.10.0 to 6.11.0 (#639)
Bumps
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<li>Handlebar <code>defaultContext</code> support for
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Merge pull request <a
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ci(e2e): fix setup docker config</li>
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chore: update generated content</li>
<li><a
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chore(deps): Bump <code>@docker/actions-toolkit</code> from 0.46.0 to
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<li><a
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Merge pull request <a
href="https://redirect.github.com/docker/build-push-action/issues/1283">#1283</a>
from crazy-max/named-context-handlebars</li>
<li><a
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Merge pull request <a
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<li><a
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Revert "init buildkit-5561 workflow"</li>
<li><a
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chore: update generated content</li>
<li><a
href="https://github.com/docker/build-push-action/commit/49c623eaf82513814393adabc13bf2535384d735"><code>49c623e</code></a>
handlebar defaultContext support for build-contexts input</li>
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commit 792686d3347b1691c0bb100d9fdf78a18f119fd8
Author: Cody Balos <balos1@llnl.gov>
Date: Wed Jan 8 21:00:33 2025 -0800
Bugfix: guard zeroing of yerr with compensated sums check (#635)
Only zero yerr when compensated summation is enabled
-----
Co-authored-by: David J. Gardner <gardner48@llnl.gov>
commit c341452b7e0cd7458ef930f69e89d40b5ba5fe06
Author: Balos, Cody, J <balos1@llnl.gov>
Date: Tue Jan 7 22:30:29 2025 -0800
wip function pointer struct
commit f0d64a3d303ef3a5770e742219d9a95a600c8d3c
Author: David Gardner <gardner48@llnl.gov>
Date: Tue Jan 7 00:18:39 2025 -0600
Docs: Fix install guide versions (#633)
Fix version numbers in the install guide
Fix scripts to automatically update version numbers
Fix typo in version changed direct…
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Replaces #345
In draft status until we settle on the defaults. Then I'll update the docs and output files.
Justification: