End to end testing #754
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: End to end testing | |
| on: | |
| pull_request: | |
| types: [ labeled ] | |
| # push: | |
| # branches: [ main ] | |
| schedule: | |
| - cron: "0 22 * * *" # daily at 10 pm | |
| workflow_dispatch: | |
| inputs: | |
| test_case: | |
| description: 'Test case to run (see e2e_test_cases.yaml for available cases), "all" to run all test cases.' | |
| required: false | |
| default: 'all' | |
| commitish_to_test: | |
| type: string | |
| description: 'Enter commit hash or branch to test (default: main).' | |
| default: "main" | |
| jobs: | |
| parse_inputs: | |
| runs-on: ubuntu-latest | |
| if: contains(github.event.pull_request.labels.*.name, 'test:e2e') || github.event_name == 'push' || github.event_name == 'schedule' || github.event_name == 'workflow_dispatch' | |
| outputs: | |
| test_cases: ${{ steps.parse-test-cases.outputs.test_cases }} | |
| commitish_to_test: ${{ steps.parse-commitish-to-test.outputs.commitish_to_test }} | |
| steps: | |
| - id: parse-test-cases | |
| run: | | |
| if [ "${{ github.event_name }}" = "workflow_dispatch" ] && [ "${{ github.event.inputs.test_case }}" != "all" ]; then | |
| echo "test_cases=[\"${{ github.event.inputs.test_case }}\"]" >> $GITHUB_OUTPUT | |
| else | |
| # NEW TEST CASES ARE ADDED HERE: | |
| echo 'test_cases=["basic", "astral", "astral_automatic_calibration", "multistep", "synchropasef", ]' >> $GITHUB_OUTPUT | |
| fi | |
| - id: parse-commitish-to-test | |
| run: | | |
| if [ "${{ github.event_name }}" = "workflow_dispatch" ]; then | |
| echo "commitish_to_test=[\"${{ github.event.inputs.commitish_to_test }}\"]" >> $GITHUB_OUTPUT | |
| else | |
| echo "commitish_to_test=" >> $GITHUB_OUTPUT # this will trigger 'actions/checkout' to use the reference or SHA for the current event | |
| fi | |
| end2end_tests: | |
| name: End to end tests | |
| needs: parse_inputs | |
| runs-on: self-hosted | |
| strategy: | |
| fail-fast: false | |
| max-parallel: 1 # make order of tests deterministic, cf. https://github.com/tektoncd/pipeline/issues/7056#issuecomment-1689301827 | |
| matrix: | |
| test_case: ${{ fromJson(needs.parse_inputs.outputs.test_cases) }} | |
| env: | |
| RUN_NAME: alphadia-${{github.sha}}-${{github.run_id}}-${{github.run_attempt}} | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| NEPTUNE_API_TOKEN: ${{ secrets.NEPTUNE_E2E_TOKEN }} | |
| NEPTUNE_PROJECT_NAME: "MannLabs/alphaDIA-e2e-tests" | |
| NUMBA_BOUNDSCHECK: 1 | |
| NUMBA_DEVELOPER_MODE: 1 | |
| NUMBA_FULL_TRACEBACKS: 1 | |
| TQDM_MININTERVAL: 10 # avoid lots of tqdm outputs | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ needs.parse_inputs.outputs.commitish_to_test }} | |
| - name: Pip installation (stable) | |
| id: pip_installation | |
| shell: bash -el {0} | |
| run: | | |
| conda info | |
| cd misc | |
| . ./pip_install.sh stable $RUN_NAME | |
| - name: Run e2e tests | |
| shell: bash -el {0} | |
| run: | | |
| cd tests | |
| . ./run_e2e_tests.sh ${{ matrix.test_case }} $RUN_NAME True ${GITHUB_SHA::7} $BRANCH_NAME | |
| - name: Cleanup | |
| if: always() | |
| shell: bash -l {0} | |
| run: | | |
| conda remove -n $RUN_NAME --all -y | |
| - name: Delete Caches on Error | |
| if: ${{ failure() && steps.pip_installation.conclusion == 'failure' }} | |
| shell: bash -el {0} | |
| run: | | |
| rm -rf ~/.cache/pip | |
| rm -rf ~/.cache/conda | |
| # Exit with error code to fail the job | |
| exit 1 |