Several quality of life updates.
- Added an option for
qc_inference_pipelineto run on cpu only. - Added an option to skip_masks listing in
list_and_anon_bids.py(Relevant for SR) - Refactored Docker building to have fewer layers.
- Refactored the
inference.pyto always run classifiaction and regression by default. - Fixed a bug in LR report generation (iteration of svg_files was not correct in report.html)
- Fixed a bug in brain_extraction where failed mask extraction would make the script crash.
- Created a dedicated file for the parsers of run_inference and run_reports and refactored run_docker to use this interface.
- Updated readme