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v0.1.3

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@t-sanchez t-sanchez released this 07 May 08:55
· 31 commits to main since this release
79d4308

Several quality of life updates.

  • Added an option for qc_inference_pipeline to run on cpu only.
  • Added an option to skip_masks listing in list_and_anon_bids.py (Relevant for SR)
  • Refactored Docker building to have fewer layers.
  • Refactored the inference.py to always run classifiaction and regression by default.
  • Fixed a bug in LR report generation (iteration of svg_files was not correct in report.html)
  • Fixed a bug in brain_extraction where failed mask extraction would make the script crash.
  • Created a dedicated file for the parsers of run_inference and run_reports and refactored run_docker to use this interface.
  • Updated readme