-
Notifications
You must be signed in to change notification settings - Fork 6
Validate rose meta #105
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Merged
jennyhickson
merged 16 commits into
MetOffice:main
from
james-bruten-mo:validate_rose_meta
Aug 29, 2025
Merged
Validate rose meta #105
Changes from 8 commits
Commits
Show all changes
16 commits
Select commit
Hold shift + click to select a range
9136795
add validate rose-meta
james-bruten-mo 6e456a1
styling
james-bruten-mo de0d575
debug comment
james-bruten-mo 13d91dd
fix error
james-bruten-mo a863278
Merge branch 'main' into validate_rose_meta
james-bruten-mo 69f4176
Update lfric_macros/validate_rose_meta.py
james-bruten-mo 11a6c9f
run black
james-bruten-mo baa0ba2
review comments
james-bruten-mo 5892f6b
Update lfric_macros/validate_rose_meta.py
james-bruten-mo 51fdba2
Update lfric_macros/validate_rose_meta.py
james-bruten-mo 9d62826
fix logic for args
james-bruten-mo 27f0b41
Merge branch 'validate_rose_meta' of github.com:james-bruten-mo/SimSy…
james-bruten-mo 20db337
further fix
james-bruten-mo 85543b5
change order
james-bruten-mo d21b5dd
should be right
james-bruten-mo 187983c
move error check
james-bruten-mo File filter
Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
There are no files selected for viewing
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,236 @@ | ||
#!/usr/bin/env python3 | ||
############################################################################## | ||
# (c) Crown copyright 2024 Met Office. All rights reserved. | ||
# The file LICENCE, distributed with this code, contains details of the terms | ||
# under which the code may be used. | ||
############################################################################## | ||
""" | ||
Validate the rose metadata in lfric_apps | ||
""" | ||
|
||
import os | ||
import sys | ||
import subprocess | ||
import argparse | ||
|
||
# A list of invalid metadata sections. Most are invalid as they are imported by | ||
# lfric-gungho but also use the files namelist contained there, creating a circular | ||
# dependency | ||
INVALID_METADATA = [ | ||
"jules-lfric", | ||
"lfric-jules-shared", | ||
"socrates-radiation", | ||
"um-aerosol", | ||
"um-boundary_layer", | ||
"um-chemistry", | ||
"um-cloud", | ||
"um-convection", | ||
"um-iau", | ||
"um-microphysics", | ||
"um-orographic_drag", | ||
"um-spectral_gwd", | ||
"um-stochastic_physics", | ||
] | ||
|
||
# A list of invalid rose-stem apps to ignore when checking metadata validity. These are | ||
# mostly apps required for lfric coupled which use metadata from other repositories | ||
INVALID_APPS = [ | ||
"fcm_make_drivers", | ||
"fcm_make_ocean", | ||
"fcm_make_river", | ||
"lfric_coupled_rivers", | ||
] | ||
|
||
|
||
def run_command(command, shell=False, env=None): | ||
""" | ||
Run a subprocess command and return the result object | ||
Inputs: | ||
- command, str with command to run | ||
Outputs: | ||
- result object from subprocess.run | ||
""" | ||
if not shell: | ||
command = command.split() | ||
if not env: | ||
env = os.environ | ||
return subprocess.run( | ||
command, | ||
capture_output=True, | ||
text=True, | ||
timeout=120, | ||
shell=shell, | ||
check=False, | ||
env=env, | ||
) | ||
|
||
|
||
def check_rose_metadata(rose_meta_path, source_path): | ||
""" | ||
Auto find rose-meta sections from the top level rose-meta directory and run `rose | ||
metadata-check` on each | ||
""" | ||
|
||
print("\n\n[INFO] - Checking rose metadata sections\n\n") | ||
failed = False | ||
|
||
# Add ROSE_META_PATH to env for rose metadata-check command | ||
my_env = os.environ.copy() | ||
my_env["ROSE_META_PATH"] = rose_meta_path | ||
|
||
start_dir = os.path.join(source_path, "rose-meta") | ||
dirs = os.listdir(start_dir) | ||
for section in dirs: | ||
if section in INVALID_METADATA: | ||
continue | ||
meta_dir = os.path.join(start_dir, section, "HEAD") | ||
command = f"rose metadata-check --verbose -C {meta_dir}" | ||
result = run_command(command, env=my_env) | ||
if result.returncode: | ||
print(f"[FAIL] - {section} failed to validate") | ||
print( | ||
f"Failure running rose metata-check on {section}:\n{result.stderr}", | ||
james-bruten-mo marked this conversation as resolved.
Outdated
Show resolved
Hide resolved
|
||
file=sys.stderr, | ||
) | ||
failed = True | ||
cameronbateman-mo marked this conversation as resolved.
Show resolved
Hide resolved
|
||
else: | ||
print(f"[PASS] - {section} validated") | ||
|
||
return failed | ||
cameronbateman-mo marked this conversation as resolved.
Show resolved
Hide resolved
|
||
|
||
|
||
def parse_suite_controlled(err_msg): | ||
""" | ||
Remove any app validation error messages resulting from suite_controlled option | ||
configs | ||
""" | ||
|
||
err = [] | ||
split_err = err_msg.split("\n") | ||
i = 0 | ||
while i < len(split_err): | ||
line = split_err[i] | ||
if "opts=suite_controlled" in line: | ||
i += 2 | ||
continue | ||
if line.strip(): | ||
err.append(line) | ||
i += 1 | ||
# There is always a single line in the error stating the number of failures. | ||
# So only return a non-empty list if there is more than just that line | ||
if len(err) > 1: | ||
jennyhickson marked this conversation as resolved.
Show resolved
Hide resolved
|
||
return err | ||
return [] | ||
|
||
|
||
def check_rose_stem_apps(meta_paths, source_path): | ||
""" | ||
Auto find rose-stem apps that use rose metadata and validate these using 'rose | ||
macro --validate' | ||
""" | ||
|
||
print("\n\n[INFO] - Validating rose-stem apps\n\n") | ||
failed = False | ||
cameronbateman-mo marked this conversation as resolved.
Show resolved
Hide resolved
|
||
|
||
start_dir = os.path.join(source_path, "rose-stem", "app") | ||
apps = os.listdir(start_dir) | ||
for app in apps: | ||
if app in INVALID_APPS: | ||
continue | ||
app_dir = os.path.join(start_dir, app) | ||
conf_file = os.path.join(app_dir, "rose-app.conf") | ||
with open(conf_file, "r") as f: | ||
for line in f: | ||
if line.startswith("meta="): | ||
break | ||
else: | ||
jennyhickson marked this conversation as resolved.
Show resolved
Hide resolved
|
||
# We reach here if the for loop hasn't been broken out of. In that case | ||
# we don't want to execut the code below. | ||
james-bruten-mo marked this conversation as resolved.
Outdated
Show resolved
Hide resolved
|
||
continue | ||
command = f"rose macro --validate {meta_paths} -C {app_dir} --no-warn version" | ||
result = run_command(command) | ||
# Check that errors are only from rose-app-suite-controlled.conf | ||
errors = [] | ||
if result.returncode: | ||
errors = parse_suite_controlled(result.stderr) | ||
errors = "\n".join(e for e in errors) | ||
|
||
if errors: | ||
print(f"[FAIL] - {app} failed to validate") | ||
print(f"Failure validating app {app}:\n{errors}", file=sys.stderr) | ||
failed = True | ||
cameronbateman-mo marked this conversation as resolved.
Show resolved
Hide resolved
|
||
else: | ||
print(f"[PASS] - {app} validated") | ||
|
||
return failed | ||
cameronbateman-mo marked this conversation as resolved.
Show resolved
Hide resolved
|
||
|
||
|
||
def parse_args(): | ||
""" | ||
Read command line args | ||
""" | ||
|
||
parser = argparse.ArgumentParser( | ||
"Validate rose-metadata in LFRic Meta files and apps" | ||
) | ||
parser.add_argument( | ||
"-a", | ||
"--apps", | ||
default=None, | ||
help="The path to the LFRic Apps source. At least one of this or Core are " | ||
"required. If both are provided then it will be assumed that Apps is the " | ||
"repository to check.", | ||
) | ||
parser.add_argument( | ||
"-c", | ||
"--core", | ||
default=None, | ||
help="The path to the LFRic Core source. At least one of this or Apps are " | ||
"required. If both are provided then it will be assumed that Apps is the " | ||
"repository to check.", | ||
) | ||
|
||
args = parser.parse_args() | ||
|
||
if args.apps: | ||
args.apps = os.path.expanduser(args.apps) | ||
if args.core: | ||
args.core = os.path.expanduser(args.core) | ||
|
||
return args | ||
|
||
|
||
def main(): | ||
""" | ||
main function for this script | ||
""" | ||
args = parse_args() | ||
|
||
meta_paths = "" | ||
rose_meta_path = "" | ||
if args.apps: | ||
source_path = args.apps | ||
meta_paths += f"-M {os.path.join(args.apps, "rose-meta")}" | ||
rose_meta_path += args.apps | ||
elif args.core: | ||
source_path = args.core | ||
meta_paths += f"-M {os.path.join(args.core, "rose-meta")} " | ||
if rose_meta_path: | ||
jennyhickson marked this conversation as resolved.
Show resolved
Hide resolved
|
||
rose_meta_path += f":{args.core}" | ||
else: | ||
rose_meta_path = args.core | ||
else: | ||
raise RuntimeError( | ||
"At least one of the Apps or Core sources must be provided as a command " | ||
"line argument" | ||
) | ||
|
||
if check_rose_metadata(rose_meta_path, source_path) or check_rose_stem_apps( | ||
meta_paths, source_path | ||
): | ||
sys.exit("There were metadata validation failures. See output for details") | ||
print("All metadata successfully validated") | ||
|
||
|
||
if __name__ == "__main__": | ||
main() |
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Uh oh!
There was an error while loading. Please reload this page.