Consider other modifications/additions #99
Description
- The ligand-based design lecture and assignment have some inconsistencies and the code in the lecture is more helpful than the example code in the assignment, students report
- Check TeachOpenCADD content and see if any of it should be added to lectures/replace a lecture (find greatest hits/most relevant stuff for course): https://projects.volkamerlab.org/teachopencadd/talktorials.html#structural-biology
- Check content on preparing/running simulations on Google Cloud and think about incorporation (should it be added somewhere? replace something else? Does it work well?) https://github.com/pablo-arantes/making-it-rain
- Same question on these cloud-based tutorials for structural bioinformatics: https://github.com/pb3lab/ibm3202
- Same question on Simon Duerr’s MD/MC stuff: https://dev.simonduerr.eu/interactive/mdmc/intro.html
- Add discussion of “explainshell” in course background materials and probably add an example of it in first (?) lecture or wherever else it fits
- Update the shape overlay examples and assignment using an updated example from OpenEye.
- See if there's a way to migrate fortran code INTO Python so there is no need for compilation