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Add the module to convert DIA-NN output to msstats.csv.
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124 files changed

+452
-3
lines changed

‎MSFragger-GUI/resources/workflows/DIA_DIA-Umpire_SpecLib_Quant.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/DIA_SpecLib_Quant.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/Default.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/Diagnostic-ion-mining.workflow

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crystalc.run-crystalc=true
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/FPOP.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/LFQ-MBR.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/LFQ-phospho.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/LFQ-ubiquitin.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/Labile_ADP-ribosylation.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/Labile_phospho.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/Mass-Offset-CommonPTMs.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/Nonspecific-HLA-C57.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/Nonspecific-HLA-DIA.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/Nonspecific-HLA-TMT10.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/Nonspecific-HLA-glyco.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/Nonspecific-HLA-phospho.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/Nonspecific-HLA.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/Nonspecific-peptidome.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/Open-quickscan.workflow

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crystalc.run-crystalc=true
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/Open.workflow

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crystalc.run-crystalc=true
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/SILAC3-phospho.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/SILAC3.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/SLC-ABPP.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT10-MS3-phospho.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT10-MS3.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT10-Open.workflow

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crystalc.run-crystalc=true
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT10-acetyl-noloc.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT10-acetyl.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT10-bridge.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT10-phospho-bridge.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT10-phospho.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT10-ubiquitin.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT10-ubiquitination-K_tmt_or_ubiq.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT10-ubiquitination-K_tmt_plus_ubiq.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT10.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT16-MS3.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT16-acetyl-noloc.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT16-acetyl.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT16-phospho.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/TMT16.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/XRNAX-MassOffset.workflow

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crystalc.run-crystalc=true
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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‎MSFragger-GUI/resources/workflows/diaTOP_ABPP.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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‎MSFragger-GUI/resources/workflows/glyco-N-HCD.workflow

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crystalc.run-crystalc=false
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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‎MSFragger-GUI/resources/workflows/glyco-N-Hybrid.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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‎MSFragger-GUI/resources/workflows/glyco-N-LFQ.workflow

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crystalc.run-crystalc=false
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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‎MSFragger-GUI/resources/workflows/glyco-N-TMT.workflow

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crystalc.run-crystalc=false
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‎MSFragger-GUI/resources/workflows/glyco-N-open-HCD.workflow

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crystalc.run-crystalc=true
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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‎MSFragger-GUI/resources/workflows/glyco-N-open-Hybrid.workflow

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crystalc.run-crystalc=true
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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diann.light=

‎MSFragger-GUI/resources/workflows/glyco-O-HCD.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
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diann.generate-msstats=false
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diann.heavy=
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diann.library=
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‎MSFragger-GUI/resources/workflows/glyco-O-Hybrid.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
8+
diann.generate-msstats=false
89
diann.heavy=
910
diann.library=
1011
diann.light=

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