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Add the module to convert DIA-NN output to msstats.csv.
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124 files changed

+452
-3
lines changed

‎MSFragger-GUI/resources/workflows/DIA_DIA-Umpire_SpecLib_Quant.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
6+
diann.generate-msstats=false
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diann.heavy=
78
diann.library=
89
diann.light=

‎MSFragger-GUI/resources/workflows/DIA_SpecLib_Quant.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
6+
diann.generate-msstats=false
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diann.heavy=
78
diann.library=
89
diann.light=

‎MSFragger-GUI/resources/workflows/Default.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
6+
diann.generate-msstats=false
67
diann.heavy=
78
diann.library=
89
diann.light=

‎MSFragger-GUI/resources/workflows/Diagnostic-ion-mining.workflow

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crystalc.run-crystalc=true
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
6+
diann.generate-msstats=false
67
diann.heavy=
78
diann.library=
89
diann.light=

‎MSFragger-GUI/resources/workflows/FPOP.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
55
diann.fragpipe.cmd-opts=
6+
diann.generate-msstats=false
67
diann.heavy=
78
diann.library=
89
diann.light=

‎MSFragger-GUI/resources/workflows/LFQ-MBR.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
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diann.fragpipe.cmd-opts=
6+
diann.generate-msstats=false
67
diann.heavy=
78
diann.library=
89
diann.light=

‎MSFragger-GUI/resources/workflows/LFQ-phospho.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
55
diann.fragpipe.cmd-opts=
6+
diann.generate-msstats=false
67
diann.heavy=
78
diann.library=
89
diann.light=

‎MSFragger-GUI/resources/workflows/LFQ-ubiquitin.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
55
diann.fragpipe.cmd-opts=
6+
diann.generate-msstats=false
67
diann.heavy=
78
diann.library=
89
diann.light=

‎MSFragger-GUI/resources/workflows/Labile_ADP-ribosylation.workflow

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crystalc.run-crystalc=false
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database.decoy-tag=rev_
55
diann.fragpipe.cmd-opts=
6+
diann.generate-msstats=false
67
diann.heavy=
78
diann.library=
89
diann.light=

‎MSFragger-GUI/resources/workflows/Labile_phospho.workflow

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crystalc.run-crystalc=false
44
database.decoy-tag=rev_
55
diann.fragpipe.cmd-opts=
6+
diann.generate-msstats=false
67
diann.heavy=
78
diann.library=
89
diann.light=

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