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Update the About page.
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MSFragger-GUI/src/com/dmtavt/fragpipe/Fragpipe.java

Lines changed: 11 additions & 14 deletions
Original file line numberDiff line numberDiff line change
@@ -860,20 +860,17 @@ private String createAboutBody() {
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final Properties p = ThisAppProps.getRemotePropertiesWithLocalDefaults();
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String linkSite = p.getProperty(ThisAppProps.PROP_LAB_SITE_URL, "https://www.nesvilab.org/");
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return "FragPipe GUI (v" + Version.version() + ")<br>"
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+ "Fengchao Yu<br>"
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+ "Dmitry Avtonomov<br>"
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+ "Guo-Ci Teo<br>"
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+ "University of Michigan, 2017-2022<br><br>"
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+ "<a href=\"" + linkSite + "\">Alexey Nesvizhskii lab</a><br/>&nbsp;<br/>"
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+ "Components (lead developers):<br>"
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+ "<a href='https://diaumpire.nesvilab.org/'>DIA-Umpire</a>: Chih-Chiang Tsou<br>"
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return "FragPipe Proteomics Platform (v" + Version.version() + ")<br>"
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+ "<a href=\"" + linkSite + "\">Alexey Nesvizhskii lab</a><br/>"
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+ "University of Michigan<br><br>"
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+ "<a href='https://fragpipe.nesvilab.org/'>FragPipe GUI</a>: Fengchao Yu, Dmitry Avtonomov, Daniel Polasky, Guo Ci Teo<br><br>"
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+ "Components (software developers):<br>"
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+ "<a href='https://diaumpire.nesvilab.org/'>DIA-Umpire</a>: Chih-Chiang Tsou, Guo Ci Teo<br>"
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+ "<a href='https://diatracer.nesvilab.org/'>diaTracer</a>: Kai Li, Fengchao Yu<br>"
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+ "<a href='https://msfragger.nesvilab.org/'>MSFragger</a>: Andy Kong, Fengchao Yu, Guo-Ci Teo, Dmitry Avtonomov<br>"
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+ "MSFragger Glyco mode: Daniel Polasky, Fengchao Yu, Guo-Ci Teo<br>"
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+ "<a href='https://msfragger.nesvilab.org/'>MSFragger</a>: Andy Kong, Fengchao Yu, Daniel Polasky, Guo-Ci Teo, Dmitry Avtonomov<br>"
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+ "<a href='https://www.nesvilab.org/Crystal-C/'>Crystal-C</a>: Hui-Yin Chang<br>"
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+ "<a href='https://github.com/Nesvilab/MSBooster'>MSBooster</a>: Kevin Yang<br>"
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+ "<a href='https://philosopher.nesvilab.org/'>Philosopher</a>: Felipe Leprevost<br>"
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+ "<a href='https://philosopher.nesvilab.org/'>Philosopher</a>: Felipe Leprevost, Yamei Deng<br>"
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+ "Philosopher (TPP components): <a href='http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP'>TPP developers with link to the TPP site</a><br>"
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+ "<a href='http://percolator.ms/'>Percolator</a>: Lukas Käll<br>"
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+ "<a href='http://www.tppms.org/tools/ptm/'>PTMProphet</a>: David Shteynberg<br>"
@@ -886,8 +883,8 @@ private String createAboutBody() {
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+ "<a href='https://github.com/vdemichev/DiaNN'>DIA-NN</a>: Vadim Demichev<br>"
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+ "<a href='https://github.com/Nesvilab/FragPipe-PDV'>FragPipe-PDV</a>: Kai Li, Bo Wen<br>"
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+ "<a href='https://skyline.ms/project/home/software/Skyline/begin.view'>Skyline</a>: Brendan MacLean, Matthew Chambers<br>"
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+ "<a href='https://saint-apms.sourceforge.net/Main.html'>SAINT</a>: Hyungwon Choi<br>"
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+ "Websites and tutorials: Sarah Haynes<br>"
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+ "<a href='https://saint-apms.sourceforge.net/Main.html'>SAINT</a>: Hyungwon Choi, Guo Ci Teo<br>"
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+ "Websites and tutorials: Sarah Haynes<br><br>"
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+ "Special thanks to Lukas Käll (Percolator), David Shteynberg (TPP, PTMProphet), George Rosenberger (EasyPQP), Vadim Demichev (DIA-NN), Brendan MacLean (Skyline), and Matthew Chambers (Skyline).<br><br>"
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+ "RawFileReader reading tool: Copyright (c) 2016 by Thermo Fisher Scientific, Inc. All rights reserved.<br>"
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+ "Bruker SDK library: Included software components: Copyright (c) 2022 by Bruker Daltonics GmbH & Co. KG. All rights reserved.”<br>";
@@ -897,7 +894,7 @@ public void showAboutDialog(Component parent) {
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log.debug("Showing about dialog");
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// HtmlStyledJEditorPane ep = new HtmlStyledJEditorPane(true, createAboutBody());
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HtmlStyledJEditorPane ep = SwingUtils.createClickableHtml(createAboutBody());
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ep.setPreferredSize(new Dimension(350, 600));
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ep.setPreferredSize(new Dimension(500, 600));
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SwingUtils.showDialog(parent, ep, "About FragPipe", JOptionPane.INFORMATION_MESSAGE);
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}
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