create vignette AE #59
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vignettes/ae_grade.Rmd
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| Maximum AE grade per patient (for both single-arm and two-arm trials) | ||
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| All AE grades per patient (for both single-arm and two-arm trials) |
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"All AE grades" is not 100% accurate. See the documentation.
Also, I'm not sure how you should describe the tables, as there are so many, but 3 categories is not what I would have said, as there are still only 2 functions. Maybe you should focus on that first? E.g. "this vignette demonstrate how to use the 2 functions of grstat, xxx() and xxx()".
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Adverse Events by Maximum Grade per Patient (Grades 1–5, for both single-arm and two-arm trials)?
I am not quite sure what are you referring to after that?
vignettes/ae_grade.Rmd
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| This vignette covers the following steps: | ||
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| Overview of the dataset, using the simulated dataset grstat_example |
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Please use markdown throughout your vignette, otherwise it is not very comfortable to read.
It is fairly easy to learn and very useful in many cases. (remember, for the backtick ` on overcomplicated French keyboards, it is Alt Gr + 7, then space)
You can also use the "Visual" mode in RStudio if you don't want to learn.
vignettes/ae_grade.Rmd
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| Overview of the dataset, using the simulated dataset grstat_example | ||
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| Creation of various AE tables for single-arm and two-arm trials, including subgroup analysis based on whether the AE is: |
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Not sure I'm following, is this a level-2 list?
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I just changed the format also there might be too many things and I might eventually remove some.
vignettes/ae_grade.Rmd
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| add_footer_lines("Percentages reflect the proportion of patients presenting at most one AE of given grade") | ||
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| ## Table of all grades per patient |
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"All grades" is not really true.
You have to summarise the information at some point, otherwise, you need one row per patient.
I implemented 3 "variants" of summarisation.
If the documentation is unclear, we should improve it! (I struggled a lot to write it, I'm sure there is a lot of room for improvement.)
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I made changes, please have a look. par contre question, pour la troisieme table, est ce que tu compte le patients 1 fois par grade ou plusieur fois pour le meme grade?
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t as pu regarder ce que j ai fait avant que je continue?
| ## Table of maximum grades per patient | ||
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| ```{r} | ||
| ae_table_grade(df_ae=ae, df_enrol=enrolres, arm=NULL, variant="max") %>% |
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idem mais avec le défaut de variant : variant=c("max", "sup", "eq")
Ensuite bien expliquer la différence.
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| ## Table of all grades per patient by arms | ||
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| ```{r} |
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Tu peux n'afficher que les n premières lignes pour raccourcir les tables si besoin
ae_table_soc(df_ae=ae, df_enrol=enrolres) %>% head(2) %>%
as_flextable()
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