TL: mini fix for edge cases #2237

Workflow file for this run

.github/workflows/ci_pipeline.yml at 9dc9f34

	---

	name: CI pipeline for pySDC

	on:
	push:
	pull_request:
	schedule:
	- cron: '1 5 * * 1'

	jobs:

	lint:
	runs-on: ubuntu-latest
	env:
	YML: 'etc/environment-lint.yml'
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- name: Checkout
	uses: actions/checkout@v1
	- name: Install Conda environment with Micromamba
	uses: mamba-org/setup-micromamba@v1
	with:
	environment-file: ${{ env.YML }}
	create-args: >-
	python=3.12
	- name: Code reformatting with black
	run: \|
	black pySDC --check --diff --color
	- name: Linting with ruff
	run: \|
	ruff check pySDC

	user_cpu_tests_linux:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	env: ['base', 'fenics', 'mpi4py', 'petsc', 'pytorch']
	python: ['3.9', '3.10', '3.11', '3.12']
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- name: Install Conda environment with Micromamba
	uses: mamba-org/setup-micromamba@v1
	with:
	environment-file: "etc/environment-${{ matrix.env }}.yml"
	create-args: >-
	python=${{ matrix.python }}
	- name: Install additional packages as needed
	run: \|
	micromamba install -y --file etc/environment-tests.yml --freeze-installed
	- name: Install pySDC as a package in the current environment
	run: \|
	pip install --no-deps -e .
	- name: Run pytest for CPU stuff
	run: \|
	echo "print('Loading sitecustomize.py...')
	import coverage
	coverage.process_startup() " > sitecustomize.py
	coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/tests -m ${{ matrix.env }}
	- name: Make coverage report
	run: \|
	coverage combine
	mv .coverage coverage_${{ matrix.env }}.dat
	- name: Uploading artifacts
	uses: actions/upload-artifact@v4
	if: matrix.python == '3.12'
	with:
	name: test-artifacts-cpu-${{ matrix.env }}
	path: \|
	data
	coverage_${{ matrix.env }}.dat

	project_cpu_tests_linux:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	env:
	- AllenCahn_Bayreuth
	- AsympConv
	- DAE
	- FastWaveSlowWave
	- Hamiltonian
	- matrixPFASST
	- parallelSDC
	- parallelSDC_reloaded
	- PinTSimE
	- RDC
	- Resilience
	- SDC_showdown
	- Second_orderSDC
	- soft_failure
	- TOMS
	python: ['3.9', '3.10', '3.11', '3.12']
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- name: Install Conda environment with Micromamba
	uses: mamba-org/setup-micromamba@v1
	with:
	environment-file: "pySDC/projects/${{ matrix.env }}/environment.yml"
	create-args: >-
	python=${{ matrix.python }}
	- name: Install additional packages as needed
	run: \|
	micromamba install -y --file etc/environment-tests.yml --freeze-installed
	- name: Run pytest for CPU stuff
	run: \|
	echo "print('Loading sitecustomize.py...')
	import coverage
	coverage.process_startup() " > sitecustomize.py
	coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/${{ matrix.env }}/tests
	- name: Make coverage report
	run: \|
	coverage combine
	mv .coverage coverage_${{ matrix.env }}.dat
	- name: Uploading artifacts
	uses: actions/upload-artifact@v4
	if: matrix.python == '3.12'
	with:
	name: test-artifacts-project-${{ matrix.env }}
	path: \|
	data
	coverage_${{ matrix.env }}.dat

	user_libpressio_tests:
	runs-on: ubuntu-latest
	container:
	image: brownbaerchen/libpressio:amd64_2
	volumes:
	- ${{ github.workspace }}:/pySDC
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- name: Install pySDC and pytest
	run: \|
	source /pySDC/pySDC/projects/compression/Docker/install_pySDC.sh
	- name: Run pytest
	run: \|
	source /opt/spack/share/spack/setup-env.sh
	spack load libpressio

	coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/compression/tests -m libpressio
	- name: Make coverage report
	run: \|
	source /opt/spack/share/spack/setup-env.sh
	spack load libpressio

	mv data data_libpressio
	coverage combine
	mv .coverage coverage_libpressio.dat
	- name: Upload artifacts
	uses: actions/upload-artifact@v4
	with:
	name: test-artifacts-libpressio
	path: \|
	data_libpressio
	coverage_libpressio.dat

	user_firedrake_tests:
	runs-on: ubuntu-latest
	container:
	image: firedrakeproject/firedrake-vanilla-default:latest
	options: --user root
	volumes:
	- ${{ github.workspace }}:/repositories
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- name: Fix HOME
	# For unknown reasons GitHub actions overwrite HOME to /github/home
	# which will break everything unless fixed
	# (https://github.com/actions/runner/issues/863)
	run: echo "HOME=/home/firedrake" >> "$GITHUB_ENV"
	- name: Checkout pySDC
	uses: actions/checkout@v4
	with:
	path: ./pySDC
	- name: Checkout gusto
	uses: actions/checkout@v4
	with:
	repository: firedrakeproject/gusto
	path: ./gusto_repo
	- name: Create virtual environment
	# pass '--system-site-packages' so Firedrake can be found
	run: python3 -m venv --system-site-packages venv-pySDC

	- name: Install pySDC
	run: \|
	. venv-pySDC/bin/activate
	pip install -e /repositories/pySDC
	pip install qmat
	# test installation
	python -c "import pySDC; print(f'pySDC module: {pySDC}')"
	- name: Install gusto
	run: \|
	. venv-pySDC/bin/activate
	pip install -e /repositories/gusto_repo
	# test installation
	python -c "import gusto; print(f'gusto module: {gusto}')"
	- name: run pytest
	run: \|
	. venv-pySDC/bin/activate
	firedrake-clean
	cd ./pySDC
	python -m coverage run -m pytest --continue-on-collection-errors -v --durations=0 /repositories/pySDC/pySDC/tests -m firedrake
	timeout-minutes: 45
	- name: Make coverage report
	run: \|

	cd ./pySDC
	mv data ../data_firedrake
	coverage combine
	mv .coverage ../coverage_firedrake.dat
	- name: Upload artifacts
	uses: actions/upload-artifact@v4
	with:
	name: test-artifacts-firedrake
	path: \|
	data_firedrake
	coverage_firedrake.dat

	user_monodomain_tests_linux:
	runs-on: ubuntu-latest
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- name: Install Conda environment with Micromamba
	uses: mamba-org/setup-micromamba@v1
	with:
	environment-file: "pySDC/projects/Monodomain/etc/environment-monodomain.yml"
	create-args: >-
	python=3.12
	- name: Compile C++ ionic models
	env:
	IONIC_MODELS_PATH: "pySDC/projects/Monodomain/problem_classes/ionicmodels/cpp"
	run: >
	c++ -O3 -Wall -shared -std=c++11 -fPIC -fvisibility=hidden
	$(python3 -m pybind11 --includes)
	${IONIC_MODELS_PATH}/bindings_definitions.cpp
	-o ${IONIC_MODELS_PATH}/ionicmodels$(python3-config --extension-suffix)
	- name: Run pytest for CPU stuff
	run: \|
	echo "print('Loading sitecustomize.py...')
	import coverage
	coverage.process_startup() " > sitecustomize.py
	coverage run -m pytest --continue-on-collection-errors -v --durations=0 pySDC/projects/Monodomain/tests -m monodomain
	- name: Make coverage report
	run: \|
	mv data data_monodomain
	coverage combine
	mv .coverage coverage_monodomain.dat
	- name: Uploading artifacts
	uses: actions/upload-artifact@v4
	with:
	name: test-artifacts-monodomain
	path: \|
	data_monodomain
	coverage_monodomain.dat

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TL: mini fix for edge cases #2237

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TL: mini fix for edge cases #2237

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