Merge pull request #278 from PauloCarvalhoRJ/Upgrade_to_VTK9.1

Upgrade to vtk9.1

Author: PauloCarvalhoRJ

GammaRay.pro

@@ -689,7 +689,7 @@ isEmpty(_QWT_LIB){
 }
 INCLUDEPATH += $$_QWT_INCLUDE
 LIBPATH     += $$_QWT_LIB
-LIBS        += -lqwt
+LIBS        += -lqwt-qt5
 #==============================================================
 
 #========== The VTK include and lib paths and libraries==================
@@ -744,7 +744,6 @@ LIBS        += -lvtkGUISupportQt$$_VTK_VERSION_SUFFIX \
 			   -lvtkImagingGeneral$$_VTK_VERSION_SUFFIX \
 			   -lvtkRenderingVolume$$_VTK_VERSION_SUFFIX \
 			   -lvtkFiltersStatistics$$_VTK_VERSION_SUFFIX \
-                           -lvtkalglib$$_VTK_VERSION_SUFFIX \
                 -lvtkImagingStencil$$_VTK_VERSION_SUFFIX \
                 -lvtkImagingHybrid$$_VTK_VERSION_SUFFIX \
                 -lvtkRenderingContext2D$$_VTK_VERSION_SUFFIX \
@@ -778,7 +777,8 @@ LIBS        += -lITKCommon$$_ITK_VERSION_SUFFIX \
                -litkvnl$$_ITK_VERSION_SUFFIX \
                -litkvnl_algo$$_ITK_VERSION_SUFFIX \
                -lITKIOPNG$$_ITK_VERSION_SUFFIX \
-               -lITKTransform$$_ITK_VERSION_SUFFIX
+               -lITKTransform$$_ITK_VERSION_SUFFIX \
+               -lITKSmoothing$$_ITK_VERSION_SUFFIX
 
 #=============================================================================
 
@@ -824,7 +824,7 @@ win32 {
 # The application version
 # Don't forget to update the Util::importSettingsFromPreviousVersion() method to
 # enable the import of registry/user settings of previous versions.
-VERSION = 6.14
+VERSION = 6.16
 
 # Define a preprocessor macro so we can get the application version in application code.
 DEFINES += APP_VERSION=\\\"$$VERSION\\\"

README.md

@@ -15,6 +15,7 @@ If you enjoyed this project, you might also enjoy GeostatsPy: https://github.com
 Python script to convert Eclipse grids to Paraview-compatible VTU format: https://github.com/BinWang0213/PyGRDECL
 
 VERSION HISTORY:<br>
+&nbsp;&nbsp;&nbsp;Version 6.16  - Upgrade of VTK to 9.1 and other years-old dependencies; some fixes.<br>
 &nbsp;&nbsp;&nbsp;Version 6.14  - Several improvements mainly involving the 3D Viewer and dataset processing.<br>
 &nbsp;&nbsp;&nbsp;Version 6.12  - Several new methods to work with grids. Several fixes and enhancements.<br>
 &nbsp;&nbsp;&nbsp;Version 6.9   - Export geologic grids as Eclipse grids, multiple other new features, enhancements and fixes.<br>

dialogs/dynamicfaciesrelationshipdiagramdialog.cpp

@@ -12,6 +12,7 @@
 #include <QScrollBar>
 #include <QClipboard>
 #include <QInputDialog>
+#include <QFile>
 
 DynamicFaciesRelationshipDiagramDialog::DynamicFaciesRelationshipDiagramDialog(
         std::vector<Attribute *> &categoricalAttributes,

dialogs/krigingdialog.cpp

@@ -18,6 +18,7 @@
 
 #include <QInputDialog>
 #include <QMessageBox>
+#include <QFile>
 #include <cmath>
 
 KrigingDialog::KrigingDialog(QWidget *parent) :

dialogs/mcrfsimdialog.cpp

@@ -174,7 +174,7 @@ void MCRFSimDialog::onRun()
         Application::instance()->logError( "    Last error:" + markovSim.getLastError() );
     } else {
         int realNum = 1;
-        for( const spectral::arrayPtr& simValues : markovSim.getRealizations() ){
+        for( spectral::arrayPtr simValues : markovSim.getRealizations() ){
             markovSim.m_cgSim->append( m_commonSimulationParameters->getBaseNameForRealizationVariables() + QString::number(realNum),
                                        *simValues,
                                        markovSim.m_pdf->getCategoryDefinition() );

docs/GammaRayManual.docx

@@ -19,7 +19,7 @@ VTK_MODULE_INIT(vtkRenderingFreeType)
 #include "imagejockey/paraviewscalarbar/vtkParaViewScalarBar.h"
 #include "util.h"
 #include <QProgressDialog>
-#include <QVTKOpenGLWidget.h>
+#include <QVTKOpenGLNativeWidget.h>
 #include <QMessageBox>
 #include <vtkAxesActor.h>
 #include <vtkOrientationMarkerWidget.h>
@@ -64,23 +64,23 @@ GaborFilterDialog::GaborFilterDialog(IJAbstractCartesianGrid *inputGrid,
     }
 
     ///-------------------setup the 3D viewer-------------------
-    _vtkwidget = new QVTKOpenGLWidget();
+    _vtkwidget = new QVTKOpenGLNativeWidget();
 
     _renderer = vtkSmartPointer<vtkRenderer>::New();
 
     // enable antialiasing
     _renderer->SetUseFXAA( true );
 
-    _vtkwidget->SetRenderWindow(vtkGenericOpenGLRenderWindow::New());
-    _vtkwidget->GetRenderWindow()->AddRenderer(_renderer);
+    _vtkwidget->setRenderWindow(vtkGenericOpenGLRenderWindow::New());
+    _vtkwidget->renderWindow()->AddRenderer(_renderer);
     _vtkwidget->setFocusPolicy(Qt::StrongFocus);
 
     //----------------------adding the orientation axes-------------------------
     vtkSmartPointer<vtkAxesActor> axes = vtkSmartPointer<vtkAxesActor>::New();
     _vtkAxesWidget = vtkSmartPointer<vtkOrientationMarkerWidget>::New();
     _vtkAxesWidget->SetOutlineColor(0.9300, 0.5700, 0.1300);
     _vtkAxesWidget->SetOrientationMarker(axes);
-    _vtkAxesWidget->SetInteractor(_vtkwidget->GetRenderWindow()->GetInteractor());
+    _vtkAxesWidget->SetInteractor(_vtkwidget->renderWindow()->GetInteractor());
     _vtkAxesWidget->SetViewport(0.0, 0.0, 0.2, 0.2);
     _vtkAxesWidget->SetEnabled(1);
     _vtkAxesWidget->InteractiveOn();
@@ -155,7 +155,8 @@ void GaborFilterDialog::updateDisplay()
     double featureSizeFinal = ( featureSizeXFinal + featureSizeYFinal ) / 2;
     //get the feature size step size (intial size is greater because initial frequency is lower)
     double dFeatureSize = ( featureSizeInitial - featureSizeFinal ) / ( s1 - s0 ) ;
-
+    //get the z coordinate of the origin of the spectrogram
+    double spectrogramOriginZ = featureSizeFinal - 0.5 * dFeatureSize;
 
     /////--------------------code to render the spectrogram cube-----------------------
     vtkSmartPointer<vtkActor> spectrogramActor = vtkSmartPointer<vtkActor>::New();
@@ -182,7 +183,7 @@ void GaborFilterDialog::updateDisplay()
                                                     dFeatureSize);
         spectrogramGridAsCellCentered->SetOrigin ( m_inputGrid->getOriginX() - m_inputGrid->getCellSizeI()/2,
                                                    m_inputGrid->getOriginY() - m_inputGrid->getCellSizeJ()/2,
-                                                   featureSizeFinal - 0.5 * dFeatureSize );
+                                                   spectrogramOriginZ );
         spectrogramGridAsCellCentered->SetExtent( extent[0], extent[1]+1,
                                                   extent[2], extent[3]+1,
                                                   extent[4], extent[5]+1 );
@@ -218,7 +219,8 @@ void GaborFilterDialog::updateDisplay()
         vtkSmartPointer<vtkThreshold> threshold = vtkSmartPointer<vtkThreshold>::New();
         {
             threshold->SetInputData( spectrogramGridAsCellCentered );
-            threshold->ThresholdByUpper(1); // Criterion is cells whose scalars are greater or equal to threshold.
+            threshold->SetUpperThreshold(1); // Criterion is cells whose scalars are greater or equal to threshold.
+            threshold->SetThresholdFunction( vtkThreshold::THRESHOLD_UPPER );
             threshold->SetInputArrayToProcess(0, 0, 0, vtkDataObject::FIELD_ASSOCIATION_CELLS, "Visibility");
             threshold->Update();
         }
@@ -249,7 +251,7 @@ void GaborFilterDialog::updateDisplay()
         _scalarBar->SetTitle("amplitude");
         //scalarBar->SetNumberOfLabels( 4 );
         _scalarBar->SetRenderer( _renderer );
-        _scalarBar->SetInteractor( _vtkwidget->GetRenderWindow()->GetInteractor() );
+        _scalarBar->SetInteractor( _vtkwidget->renderWindow()->GetInteractor() );
 
         // Create a text style for the cube axes
         vtkSmartPointer<vtkTextProperty> tprop = vtkSmartPointer<vtkTextProperty>::New();
@@ -282,11 +284,18 @@ void GaborFilterDialog::updateDisplay()
         spectral::arrayPtr gridData( m_inputGrid->createSpectralArray( m_inputVariableIndex ) );
         ImageJockeyUtils::makeVTKImageDataFromSpectralArray( out, *gridData );
 
-        //put the input grid a bit far from the spectrogram cube
+        //put the input grid a bit below from the spectrogram cube
         double* origin = out->GetOrigin();
-        origin[2] -= 10.0;
+        origin[0] = m_inputGrid->getOriginX();
+        origin[1] = m_inputGrid->getOriginY();
+        origin[2] = spectrogramOriginZ - 10.0;
         out->SetOrigin( origin );
 
+        //render the input grid with the correct cell sizes
+        out->SetSpacing ( m_inputGrid->getCellSizeI(),
+                          m_inputGrid->getCellSizeJ(),
+                          m_inputGrid->getCellSizeK());
+
         //Create a color table
         vtkSmartPointer<vtkLookupTable> lut = vtkSmartPointer<vtkLookupTable>::New();
         {
@@ -330,7 +339,7 @@ void GaborFilterDialog::updateDisplay()
     _renderer->AddActor( gridActor );
     _currentActors.push_back( gridActor );
     _renderer->ResetCamera();
-    _vtkwidget->GetRenderWindow()->Render();
+    _vtkwidget->renderWindow()->Render();
 }
 
 void GaborFilterDialog::onScan()
@@ -408,7 +417,7 @@ void GaborFilterDialog::onFreqAzSelectionsUpdated(const GaborFrequencyAzimuthSel
 
 void GaborFilterDialog::onUserEditedAFrequency(QString freqValue)
 {
-    Q_UNUSED( freqValue );
+    Q_UNUSED( freqValue )
     //get the user-entered topological frequencies
     // the frequencies are topological (that is, inverse of cell counts)
     // because the Gabor transform involves convolutions, which are cell-centered

docs/figures.pptx

@@ -12,7 +12,7 @@ class GaborFilterDialog;
 
 class IJAbstractCartesianGrid;
 class IJQuick3DViewer;
-class QVTKOpenGLWidget;
+class QVTKOpenGLNativeWidget;
 class vtkRenderer;
 class vtkOrientationMarkerWidget;
 class vtkPolyData;
@@ -50,7 +50,7 @@ class GaborFilterDialog : public QDialog
 
     ////////-----members used for 3D display-------------------
     // the Qt widget containing a VTK viewport
-    QVTKOpenGLWidget *_vtkwidget;
+    QVTKOpenGLNativeWidget *_vtkwidget;
     // the VTK renderer (add VTK actors to it to build the scene).
     vtkSmartPointer<vtkRenderer> _renderer;
     // this must be class variable, otherwise a crash ensues due to smart pointer going

imagejockey/gabor/gaborfilterdialog.cpp

@@ -11,6 +11,8 @@
 #include <qwt_plot_renderer.h>
 #include <qwt_plot_canvas.h>
 #include <qwt_plot_curve.h>
+#include <qwt_matrix_raster_data.h>
+#include <QPen>
 #include <cmath>
 
 #include <qapplication.h>
@@ -41,8 +43,8 @@ class SpectrogramZoomer: public QwtPlotZoomer
     }
 };
 
-///////////////////////////////////////////RASTER DATA ADAPTER: QwtRasterData <-> CartesianGrid ///////////////////////
-class SpectrogramData: public QwtRasterData{
+///////////////////////////////////////////RASTER DATA ADAPTER: QwtMatrixRasterData <-> CartesianGrid ///////////////////////
+class SpectrogramData: public QwtMatrixRasterData{
 public:
     SpectrogramData() : m_var( nullptr ), m_cg( nullptr ), m_decibelRefValue(100.0) {
         //set some default values before the user chooses a grid
@@ -105,8 +107,8 @@ class SpectrogramData: public QwtRasterData{
     double m_decibelRefValue;
 };
 
-///////////////////////////////////////////RASTER DATA ADAPTER: QwtRasterData <-> SVDFactor ///////////////////////
-class FactorData: public QwtRasterData{
+///////////////////////////////////////////RASTER DATA ADAPTER: QwtMatrixRasterData <-> SVDFactor ///////////////////////
+class FactorData: public QwtMatrixRasterData{
 public:
     FactorData() : m_factor( nullptr ), m_colorScaleForSVDFactor( ColorScaleForSVDFactor::LINEAR ) {
 		//set some default values before the user chooses a factor