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developer-guide/07-Plugins/02-adding-plugins-to-ui.md

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job_name: job_name_as_defined_in_Python
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display: true # true to display on the /Pioreactors card
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source: your_plugin_name
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description: This description is displayed with the start/stop buttons in Manage / Activities.
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description: This description is displayed with the start/stop buttons in Control / Activities.
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published_settings:
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- key: rpm # as defined in Python
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unit: RPM #
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label: Stirring speed # human readable name
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description: This description is displayed with an editable field in Manage / Settings.
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description: This description is displayed with an editable field in Control / Settings.
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type: numeric # one of numeric, bool, string, json
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default: null
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display: true # true to display on the /Pioreactors card
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- key: something_else
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unit: lb
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label: Something else
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description: This description is displayed with an editable switch in Manage / Settings.
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description: This description is displayed with an editable switch in Control / Settings.
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type: bool # one of numeric, bool, string, json
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default: null
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display: true # true to display on the /Pioreactors card

experiments/02-Secondary level education/01-control-testing.md

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3. Wipe the vials and place them in the Pioreactors.
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4. Visit [pioreactor.local](http://pioreactor.local) and start a new experiment.
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5. On the left menu, select the _Pioreactors_ page. Add any additional Pioreactors that you would like to use (more information [here](/user-guide/create-cluster)).
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6. Select _Manage all Pioreactors_, and start _Stirring_ activity, _Temperature automation_ activity (set to an optimal temperature; ex. 30°C) and _OD reading_ activity.
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6. Select _Control all Pioreactors_, and start _Stirring_ activity, _Temperature automation_ activity (set to an optimal temperature; ex. 30°C) and _OD reading_ activity.
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7. Confirm that everything looks normal (ex: receiving optical density signal).
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8. Back on the _Pioreactors_ page, select _Manage all Pioreactors_ and start _Growth rate_. It will take a minute for results to begin showing up.
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8. Back on the _Pioreactors_ page, select _Control all Pioreactors_ and start _Growth rate_. It will take a minute for results to begin showing up.
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9. Watch growth progress on the _Overview_ page.

experiments/02-Secondary level education/caffeine-inhibition.md

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4. Wipe the vials and place them in the Pioreactors.
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5. Visit [pioreactor.local](http://pioreactor.local) and start a new experiment.
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6. On the left menu, select the _Pioreactors_ page. Add any additional Pioreactors that you would like to use (more information [here](/user-guide/create-cluster)).
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7. Select _Manage all Pioreactors_, and start _Stirring_ activity, _Temperature automation_ activity (set to an optimal temperature; ex. 30°C) and _OD reading_ activity.
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7. Select _Control all Pioreactors_, and start _Stirring_ activity, _Temperature automation_ activity (set to an optimal temperature; ex. 30°C) and _OD reading_ activity.
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8. Confirm that everything looks normal (ex: receiving optical density signal).
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9. Back on the _Pioreactors_ page, select _Manage all Pioreactors_ and start _Growth rate_. It will take a minute for results to begin showing up.
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9. Back on the _Pioreactors_ page, select _Control all Pioreactors_ and start _Growth rate_. It will take a minute for results to begin showing up.
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10. Watch growth progress on the _Overview_ page.

experiments/02-Secondary level education/low-vs-high-conc-media.md

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4. Visit [pioreactor.local](http://pioreactor.local) and start a new experiment.
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5. On the left menu, select the _Pioreactors_ page. Add any additional Pioreactors that you would like to use (more information [here](/user-guide/create-cluster)).
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6. Select _Calibrate_ for each Pioreactor and under the _Blanks_ tab, click _Start_.
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7. Select _Manage all Pioreactors_, and start _Stirring_ activity, _Temperature automation_ activity (set to an optimal temperature; ex. 30°C) and _OD reading_ activity.
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7. Select _Control all Pioreactors_, and start _Stirring_ activity, _Temperature automation_ activity (set to an optimal temperature; ex. 30°C) and _OD reading_ activity.
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8. Confirm that everything looks normal (ex: receiving optical density signal).
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9. Back on the _Pioreactors_ page, select _Manage all Pioreactors_ and start _Growth rate_. It will take a minute for results to begin showing up.
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9. Back on the _Pioreactors_ page, select _Control all Pioreactors_ and start _Growth rate_. It will take a minute for results to begin showing up.
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10. Optional: you can change the names of the Pioreactor in the UI to display the percent of media.
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11. Students can watch growth progress on the _Overview_ page.

experiments/02-Secondary level education/salt-stress-on-yeast.md

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7. Using sterile techniqes, add 3-4 drops of this yeast solution to your vials.
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8. Wipe the vials and place them in the Pioreactor.
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9. Visit [pioreactor.local](http://pioreactor.local) and start a new experiment.
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10. On the left menu, select the _Pioreactors_ page. Add any additional Pioreactors that you would like to use (more information [here](/user-guide/create-cluster)). Select _Manage all Pioreactors_, and start:
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10. On the left menu, select the _Pioreactors_ page. Add any additional Pioreactors that you would like to use (more information [here](/user-guide/create-cluster)). Select _Control all Pioreactors_, and start:
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* _Stirring_ activity
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* _OD reading_ activity
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* _Temperature automation_ activity
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11. Confirm that everything looks normal on the _Overview_ page (ex: receiving optical density signal).
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12. Back on the _Pioreactors_ page, select _Manage all Pioreactors_ and start _Growth rate_.
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12. Back on the _Pioreactors_ page, select _Control all Pioreactors_ and start _Growth rate_.
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13. Watch the growth progress on the _Overview_ page!

experiments/02-Secondary level education/yeast-growth-by-temperature.md

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7. Sterily add 3-4 drops of this yeast solution to your vials.
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8. Wipe the vials and place them in the Pioreactor.
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6. Visit [pioreactor.local](http://pioreactor.local) and start a new experiment.
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7. On the left menu, select the _Pioreactors_ page. Add any additional Pioreactors that you would like to use (more information [here](/user-guide/create-cluster)). Select _Manage all Pioreactors_, and start:
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7. On the left menu, select the _Pioreactors_ page. Add any additional Pioreactors that you would like to use (more information [here](/user-guide/create-cluster)). Select _Control all Pioreactors_, and start:
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* _Stirring_ activity
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* _OD reading_ activity
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8. Select _Manage_ on an individual Pioreactor. Turn on the _Temperature automation_ activity on _Thermostat_, selecting your temperature of interest.
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8. Confirm that everything looks normal on the _Overview_ page (ex: receiving optical density signal).
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9. Back on the _Pioreactors_ page, select _Manage all Pioreactors_ and start _Growth rate_.
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9. Back on the _Pioreactors_ page, select _Control all Pioreactors_ and start _Growth rate_.
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* Optional: you can change the names of the Pioreactor in the UI to display the target temperature.
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11. Students can watch growth progress on the _Overview_ page.

experiments/02-Secondary level education/yeast-in-ethanol.md

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* Alternatively, a yeast stock solution can be made by diluting a small amount of yeast in 15 mL of YPD stock, then 1 drop of this stock solution can be added to your vials.
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6. Wipe the vials and place them in the Pioreactors.
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7. Visit [pioreactor.local](http://pioreactor.local) and start a new experiment.
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8. On the left menu, select the Pioreactors page. Add any additional Pioreactors that you would like to use (more information [here](/user-guide/create-cluster)). Select Manage all Pioreactors, and start _Stirring_ activity and _OD reading_ activity.
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8. On the left menu, select the Pioreactors page. Add any additional Pioreactors that you would like to use (more information [here](/user-guide/create-cluster)). Select Control all Pioreactors, and start _Stirring_ activity and _OD reading_ activity.
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9. Optional: you can turn on the Temperature automation activity and set it on _Thermostat_ at an optimal temperature (ex. 30C).
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10. Confirm that everything looks normal (ex: receiving optical density signal).
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11. Back on the _Pioreactors_ page, select _Manage all Pioreactors_ and start _Growth rate_. It will take a minute for results to begin showing up.
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11. Back on the _Pioreactors_ page, select _Control all Pioreactors_ and start _Growth rate_. It will take a minute for results to begin showing up.
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12. Optional: you can change the names of the Pioreactor in the UI to display the target temperature.
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13. Students can watch growth progress on the _Overview_ page.
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experiments/03-University level education/01-algae-day-night-cycle.md

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5. Wipe the vials and place them in the Pioreactor.
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6. Visit [pioreactor.local](http://pioreactor.local) and start a new experiment.
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7. Click the _Plugins_ tab on the left and install the _led_cycle_ plugin. This will add the Day/Night feature when you begin LED automations.
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8. On the left menu, select the Pioreactors page. Add any additional Pioreactors that you would like to use (more information [here](/user-guide/create-cluster)). Select _Manage all Pioreactors_, and start _Stirring_ activity and _OD reading_ activity.
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8. On the left menu, select the Pioreactors page. Add any additional Pioreactors that you would like to use (more information [here](/user-guide/create-cluster)). Select _Control all Pioreactors_, and start _Stirring_ activity and _OD reading_ activity.
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:::note Optional
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Start the _Temperature automation_ activity set on an optimal temperature.
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9. Start the _LED automation_ at the bottom of the _Activities_ list in _Manage_. Select _Day/Night Cycle_ from the drop down menu, and set your desired _Intensity_ (no more than 12% works best!) or _Light_ and _Dark duration_ (16h:8h is optimal).
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* This automation creates a day/night cycle ideal for algae growth.
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10. Confirm that everything looks normal on the Overview page (ex: receiving optical density signal).
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11. Back on the Pioreactors page, select _Manage all Pioreactors_ and start _Growth rate_. It will take a minute for results to begin showing up.
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11. Back on the Pioreactors page, select _Control all Pioreactors_ and start _Growth rate_. It will take a minute for results to begin showing up.
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:::note Optional
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Change the names of the Pioreactor in the UI to organize your vials.

user-guide/02-Experiment basics/06-monitor-experiment.md

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## Changing settings
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To **change the settings** of activities after starting, navigate to the _Pioreactors_ tab. Under _Manage_ for a single Pioreactor or _Manage all Pioreactors_, click the _Settings_ tab.
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To **change the settings** of activities after starting, navigate to the _Pioreactors_ tab. Under _Manage_ for a single Pioreactor or _Control all Pioreactors_, click the _Settings_ tab.
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![](/img/user-guide/02-experiment-basics/04-set-up-an-experiment/manage_ui.png)
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user-guide/03-Extending your Pioreactor/01-cluster-management/03-backup-and-restore-system-files.md

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Each Pioreactor keeps its configuration, calibration data, and persistent state inside `~/.pioreactor`. The Inventory page now lets you export that directory as a system archive (`.zip`) for safekeeping and import it onto the same unit when you need to restore or clone a setup.
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![Manage Pioreactor menu showing Export system archive and Import system archive actions highlighted](/img/user-guide/03-extending-your-pioreactor/01-cluster-management/03-backup-and-restore-system-files/inventory-export-import-menu.png)
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![Control Pioreactor menu showing Export system archive and Import system archive actions highlighted](/img/user-guide/03-extending-your-pioreactor/01-cluster-management/03-backup-and-restore-system-files/inventory-export-import-menu.png)
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## Exporting a system archive
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1. Open the **Inventory** page, find the Pioreactor you want to back up, and click **Manage Pioreactor → Export system archive**.
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1. Open the **Inventory** page, find the Pioreactor you want to back up, and click **Control Pioreactor → Export system archive**.
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2. Review the dialog and click **Export** when ready. The UI downloads a file named `<pioreactor>_dot_pioreactor.zip`.
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3. Store the archive somewhere safe. It contains every file from that unit’s `~/.pioreactor` plus a `pioreactor_export_metadata.json` descriptor (hostname, version, export time).
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Use imports when you need to restore a backup, duplicate a Pioreactor after replacing hardware, or bring back calibration data after re-flashing an SD card.
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1. On the **Inventory** page, choose **Manage Pioreactor → Import system archive**.
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1. On the **Inventory** page, choose **Control Pioreactor → Import system archive**.
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2. Read the warning and click **Select system archive file**, then pick a `.zip` generated by the export flow.
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3. Wait for confirmation in the snackbar. The UI shows a spinner while uploading and tells you when the Pioreactor begins rebooting.
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