Merge pull request #17 from CeresBarros/main

achubaty · web-flow · commit edf6e906fe42 · 2022-11-04T16:00:04.000-06:00
minor changes  (README + preamble)
diff --git a/README.md b/README.md
@@ -16,9 +16,11 @@ Manual of the LandR ecosystem of SpaDES modules - available at <https://LandR-ma
 
 ## Archived versions
 
--   [PDF](https://github.com/PredictiveEcology/LandR-Manual/archive/pdf)
+-   [PDF](https://github.com/PredictiveEcology/LandR-Manual/tree/main/archive/pdf)
 
 ## News
 
+-   v. 1.0.3 -- manual formatting improvements
+-   v. 1.0.2 -- manual improvements, and minor changes to modules
 -   v. 1.0.1 -- manual improvements, mostly related with table formatting
 -   v. 1.0.0 -- first manual release
diff --git a/archive/pdf/LandR-manual-v1.0.3.pdf b/archive/pdf/LandR-manual-v1.0.3.pdf
diff --git a/docs/LandRManual.epub b/docs/LandRManual.epub
diff --git a/docs/LandRManual.pdf b/docs/LandRManual.pdf
diff --git a/docs/index.html b/docs/index.html
@@ -106,9 +106,11 @@ <h1>Preface<a class="anchor" aria-label="anchor" href="#preface"><i class="fas f
 webpage</a>.</p>
 <p><strong>Previous versions:</strong></p>
 <ul>
-<li><a href="https://github.com/PredictiveEcology/LandR-Manual/raw/main/archive/pdf/LandR-manual-v1.0.0.pdf">LandR Manual v. 1.0.0</a></li>
-<li><a href="https://github.com/PredictiveEcology/LandR-Manual/raw/main/archive/pdf/LandR-manual-v1.0.1.pdf">LandR Manual v. 1.0.1</a></li>
+<li><a href="https://github.com/PredictiveEcology/LandR-Manual/raw/main/archive/pdf/LandR-manual-v1.0.0.pdf">LandR Manual v1.0.0</a></li>
+<li><a href="https://github.com/PredictiveEcology/LandR-Manual/raw/main/archive/pdf/LandR-manual-v1.0.1.pdf">LandR Manual v1.0.1</a></li>
+<li><a href="https://github.com/PredictiveEcology/LandR-Manual/raw/main/archive/pdf/LandR-manual-v1.0.2.pdf">LandR Manual v1.0.2</a></li>
 </ul>
+<!-- -   [LandR Manual v. 1.0.0](https://github.com/PredictiveEcology/LandR-Manual/raw/main/archive/pdf/LandR-manual-v1.0.0.pdf) --><!-- -   [LandR Manual v. 1.0.1](https://github.com/PredictiveEcology/LandR-Manual/raw/main/archive/pdf/LandR-manual-v1.0.1.pdf) --><!-- -   [LandR Manual v. 1.0.2](https://github.com/PredictiveEcology/LandR-Manual/raw/main/archive/pdf/LandR-manual-v1.0.2.pdf) -->
 </div>
   <div class="chapter-nav">
 <div class="empty"></div>
diff --git a/docs/landr-biomass_borealdataprep-module.html b/docs/landr-biomass_borealdataprep-module.html
@@ -90,7 +90,7 @@ <h1>
 </h1>
 <!-- the following are text references used in captions for LaTeX compatibility -->
 
-<p><a href="https://github.com/PredictiveEcology/Biomass_borealDataPrep/commit/946dff8df0663e95890ed4d878d9b86ef3d8b53e"><img src="modules/Biomass_borealDataPrep/figures/moduleVersionBadge.png" alt="module-version-Badge"></a></p>
+<p><a href="https://github.com/CeresBarros/Biomass_borealDataPrep.git"><img src="modules/Biomass_borealDataPrep/figures/moduleVersionBadge.png" alt="module-version-Badge"></a></p>
 <p><a href="https://github.com/PredictiveEcology/Biomass_borealDataPrep/issues"><img src="modules/Biomass_borealDataPrep/figures/issuesBadge.png" alt="Issues-badge"></a></p>
 <!-- if knitting to pdf remember to add the pandoc_args: ["--extract-media", "."] option to yml in order to get the badge images -->
 <div id="authors-2" class="section level4" number="3.0.0.1">
diff --git a/docs/landr-biomass_core-module.html b/docs/landr-biomass_core-module.html
@@ -99,7 +99,7 @@ <h1>
 
 
 
-<p><a href="https://github.com/PredictiveEcology/Biomass_core/commit/ee09095ad6dc11353ac0d76714524c029c93d7a8"><img src="modules/Biomass_core/figures/moduleVersionBadge.png" alt="module-version-Badge"></a></p>
+<p><a href="https://github.com/CeresBarros/Biomass_core.git"><img src="modules/Biomass_core/figures/moduleVersionBadge.png" alt="module-version-Badge"></a></p>
 <p><a href="https://github.com/PredictiveEcology/Biomass_core/issues"><img src="modules/Biomass_core/figures/issuesBadge.png" alt="Issues-badge"></a></p>
 <div id="authors" class="section level4" number="1.0.0.1">
 <h4>
diff --git a/docs/landr-biomass_speciesdata-module.html b/docs/landr-biomass_speciesdata-module.html
@@ -94,7 +94,7 @@ <h1>
 
 
 
-<p><a href="https://github.com/PredictiveEcology/Biomass_speciesData/commit/92664fca7375029a8c11aeaefd50eb0e308899aa"><img src="modules/Biomass_speciesData/figures/moduleVersionBadge.png" alt="module-version-Badge"></a></p>
+<p><a href="https://github.com/CeresBarros/Biomass_speciesData.git"><img src="modules/Biomass_speciesData/figures/moduleVersionBadge.png" alt="module-version-Badge"></a></p>
 <p><a href="https://github.com/PredictiveEcology/Biomass_speciesData/issues"><img src="modules/Biomass_speciesData/figures/issuesBadge.png" alt="Issues-badge"></a></p>
 <div id="authors-1" class="section level4" number="2.0.0.1">
 <h4>
diff --git a/docs/landr-biomass_speciesparameters-module.html b/docs/landr-biomass_speciesparameters-module.html
@@ -90,7 +90,7 @@ <h1>
 </h1>
 <!-- the following are text references used in captions for LaTeX compatibility -->
 
-<p><a href="https://github.com/CeresBarros/Biomass_speciesParameters/commit/002bae31eb3cf851d694e4d55cbba5fe5064c5c8"><img src="modules/Biomass_speciesParameters/figures/moduleVersionBadge.png" alt="module-version-Badge"></a></p>
+<p><a href="https://github.com/CeresBarros/Biomass_speciesParameters.git"><img src="modules/Biomass_speciesParameters/figures/moduleVersionBadge.png" alt="module-version-Badge"></a></p>
 <p><a href="https://github.com/PredictiveEcology/Biomass_speciesParameters/issues"><img src="modules/Biomass_speciesParameters/figures/issuesBadge.png" alt="Issues-badge"></a></p>
 <!-- if knitting to pdf remember to add the pandoc_args: ["--extract-media", "."] option to yml in order to get the badge images -->
 <div id="authors-3" class="section level4" number="4.0.0.1">
diff --git a/docs/landr-biomass_validationknn-module.html b/docs/landr-biomass_validationknn-module.html
@@ -90,7 +90,7 @@ <h1>
 </h1>
 <!-- the following are text references used in captions for LaTeX compatibility -->
 
-<p><a href="https://github.com/PredictiveEcology/Biomass_validationKNN/commit/5a62e4be7d0c752d9456367307aa33a58a4cc2f7"><img src="modules/Biomass_validationKNN/figures/moduleVersionBadge.png" alt="module-version-Badge"></a></p>
+<p><a href="https://github.com/CeresBarros/Biomass_validationKNN.git"><img src="modules/Biomass_validationKNN/figures/moduleVersionBadge.png" alt="module-version-Badge"></a></p>
 <p><a href="https://github.com/PredictiveEcology/Biomass_validationKNN/issues"><img src="modules/Biomass_validationKNN/figures/issuesBadge.png" alt="Issues-badge"></a></p>
 <!-- if knitting to pdf remember to add the pandoc_args: ["--extract-media", "."] option to yml in order to get the badge images -->
 <div id="authors-4" class="section level4" number="5.0.0.1">
diff --git a/docs/search.json b/docs/search.json
diff --git a/index.Rmd b/index.Rmd
@@ -53,6 +53,18 @@ webpage](https://spades.predictiveecology.org/).
 
 **Previous versions:**
 
--   [LandR Manual v. 1.0.0](https://github.com/PredictiveEcology/LandR-Manual/raw/main/archive/pdf/LandR-manual-v1.0.0.pdf)
--   [LandR Manual v. 1.0.1](https://github.com/PredictiveEcology/LandR-Manual/raw/main/archive/pdf/LandR-manual-v1.0.1.pdf)
+```{r, eval = TRUE, echo = FALSE, results = 'asis'}
+allPDFs <- list.files("archive/pdf", full.names = TRUE)
+allPDFs <- grep(Sys.getenv('LANDR_MAN_VERSION'), allPDFs, invert = TRUE, value = TRUE)
+versionNames <- sub("\\.pdf", "", gsub("(-|_)", " ", basename(allPDFs)))
+versionNames <- sub("[m|M]anual", "Manual", versionNames)
+pdfURLs <- paste0("https://github.com/PredictiveEcology/LandR-Manual/raw/main/", allPDFs)
+
+## text to render
+cat(paste0("-   [", versionNames, "](", pdfURLs, ")\n"))
+```
+
+<!-- -   [LandR Manual v. 1.0.0](https://github.com/PredictiveEcology/LandR-Manual/raw/main/archive/pdf/LandR-manual-v1.0.0.pdf) -->
+<!-- -   [LandR Manual v. 1.0.1](https://github.com/PredictiveEcology/LandR-Manual/raw/main/archive/pdf/LandR-manual-v1.0.1.pdf) -->
+<!-- -   [LandR Manual v. 1.0.2](https://github.com/PredictiveEcology/LandR-Manual/raw/main/archive/pdf/LandR-manual-v1.0.2.pdf) -->
 
