@@ -39,35 +39,12 @@ All of the presentation material for this workshop is available on Zenodo and ca
3939<table style =" width :100% " >
4040 <tbody>
4141 <tr>
42- <th colspan=3>Tuesday, April 8th 2025</th>
42+ <th colspan=3>Friday, June 6th 2025</th>
4343 </tr>
4444 <tr>
45- <td>09:30 - 10:30</td>
46- <td colspan=3> Registration</td>
47- </tr>
48- <tr>
49- <td>10:30 - 11:45</td>
45+ <td>12:00 - 14:20</td>
5046 <td>Session 1</td>
51- <td><p>Introduction - Automated Image Analysis is Essential for Reproducible Science</p><p>Dave Barry</p></td>
52- </tr>
53- <tr>
54- <td></td>
55- <td colspan=3>
56- <ul>
57- <li>Why manual analysis is a bad idea</li>
58- <li>Embracing uncertainty</li>
59- <li>What is metadata and why do you need it</li>
60- </ul>
61- </td>
62- </tr>
63- <tr>
64- <td>11:45 - 12:00</td>
65- <td colspan=2>Coffee Break</td>
66- </tr>
67- <tr>
68- <td>12:00 - 13:30</td>
69- <td>Session 2</td>
70- <td><p>Image Pre-Processing, Segmentation & Analysis</p><p>Sara Salgueiro Torres</p></td>
47+ <td><p>Image Pre-Processing, Segmentation & Analysis</p><p>Dave Barry</p></td>
7148 </tr>
7249 <tr>
7350 <td></td>
@@ -83,17 +60,12 @@ All of the presentation material for this workshop is available on Zenodo and ca
8360 </td>
8461 </tr>
8562 <tr>
86- <td>13:30 - 13:40</td>
87- <td>Tech Bite</td>
88- <td><p> How to enhance your experimental workflows through Smart Experiments and JOBs </p><p> Dylan Donnellan, Lennox </p></td>
89- </tr>
90- <tr>
91- <td>13:40 - 14:40</td>
92- <td colspan=2>Lunch</td>
63+ <td>14:20 - 14:50</td>
64+ <td colspan=2>Coffee Break</td>
9365 </tr>
9466 <tr>
95- <td>14:40 - 16:25 </td>
96- <td>Session 3 </td>
67+ <td>14:50 - 17:00 </td>
68+ <td>Session 2 </td>
9769 <td><p>Assembling Pipelines and Interpreting Results</p><p>Dave Barry</p></td>
9870 </tr>
9971 <tr>
@@ -109,37 +81,12 @@ All of the presentation material for this workshop is available on Zenodo and ca
10981 </td>
11082 </tr>
11183 <tr>
112- <td>16:25 - 16:40</td>
113- <td colspan=2>Coffee Break</td>
114- </tr>
115- <tr>
116- <td>16:40 - 18:10</td>
117- <td>Session 4</td>
118- <td><p>Introduction to Batch Processing</p><p>Dave Barry</p></td>
119- </tr>
120- <tr>
121- <td></td>
122- <td colspan=3>
123- <ul>
124- <li>Practical Application: </li>
125- <ul>
126- <li>Record commands to form the basis of a script</li>
127- </ul>
128- </ul>
129- </td>
130- </tr>
131- <tr>
132- <td>18:10 - ?</td>
133- <td>Evening Social</td>
134- <td>Taylor's Bar, 7 Dominick St Upper, Galway, H91 RP48</td>
135- </tr>
136- <tr>
137- <th colspan=3>Wednesday, April 9th 2025</th>
84+ <th colspan=3>Friday, June 20th 2025</th>
13885 </tr>
13986 <tr>
140- <td>09 :30 - 10 :30</td>
141- <td>Session 5 </td>
142- <td><p>Introduction to Python and installations</p><p>Stefania Marcotti </p></td>
87+ <td>12 :30 - 13 :30</td>
88+ <td>Session 3 </td>
89+ <td><p>Introduction to Python and installations</p><p>Alicja Skórkowska </p></td>
14390 </tr>
14491 <tr>
14592 <td></td>
@@ -151,39 +98,36 @@ All of the presentation material for this workshop is available on Zenodo and ca
15198 </td>
15299 </tr>
153100 <tr>
154- <td>10 :30 - 10:45 </td>
101+ <td>13 :30 - 13:50 </td>
155102 <td colspan=2>Coffee Break</td>
156103 </tr>
157104 <tr>
158- <td>10:45 - 12:30 </td>
159- <td>Session 6 </td>
160- <td><p>Using Jupyter Notebooks for Reproducible Analysis</p><p>Stefania Marcotti </p></td>
105+ <td>13:50 - 14:50 </td>
106+ <td>Session 4 </td>
107+ <td><p>Using Jupyter Notebooks for Reproducible Analysis - Part 1 </p><p>Alicja Skórkowska </p></td>
161108 </tr>
162109 <tr>
163110 <td></td>
164111 <td colspan=3>
165112 <ul>
166113 <li>Variables and arrays</li>
167- <li>Practical Application: quantify morphology of objects in a 2D image with Jupyter</li>
168114 </ul>
169115 </td>
170116 </tr>
171117 <tr>
172- <td>12:30 - 13:30 </td>
173- <td colspan=2>Lunch </td>
118+ <td>14:50 - 15:10 </td>
119+ <td colspan=2>Coffee Break </td>
174120 </tr>
175121 <tr>
176- <td>13:30 - 15:30 </td>
177- <td>Session 7 </td>
178- <td><p>Using napari as an image analysis tool and as a viewer </p><p>Martin Jones </p></td>
122+ <td>15:10 - 16:10 </td>
123+ <td>Session 4 </td>
124+ <td><p>Using Jupyter Notebooks for Reproducible Analysis - Part 2 </p><p>Alicja Skórkowska </p></td>
179125 </tr>
180126 <tr>
181127 <td></td>
182128 <td colspan=3>
183129 <ul>
184- <li>Overview of napari GUI</li>
185- <li>Practical Application: batch processing with Jupyter</li>
186- <li>Practical Application: using napari as a viewer from Jupyter</li>
130+ <li>Practical Application: quantify morphology of objects in a 2D image with Jupyter</li>
187131 </ul>
188132 </td>
189133 </tr>
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