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Add top species chart to overview page #580

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Merged
merged 15 commits into from
Mar 7, 2025
Merged

Add top species chart to overview page #580

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4be5caf
Add plot
vanessavmac Sep 16, 2024
41c5e4f
Fix formatting
vanessavmac Sep 16, 2024
61a55b1
Flip order so most frequent at top
vanessavmac Sep 17, 2024
63b8910
Fix formatting
vanessavmac Sep 17, 2024
688e461
Merge branch 'main' of https://github.com/RolnickLab/ami-platform int…
vanessavmac Sep 17, 2024
1ed5be8
Fix order
vanessavmac Sep 18, 2024
634dbbf
Merge branch 'main' of https://github.com/RolnickLab/ami-platform int…
vanessavmac Sep 18, 2024
ece621b
Merge branch 'main' into 387-add-top-species-chart-to-overview-page
mihow Nov 28, 2024
c49176c
Merge branch 'main' into 387-add-top-species-chart-to-overview-page
mihow Nov 28, 2024
15aa4e5
Merge branch 'main' into 387-add-top-species-chart-to-overview-page
mihow Dec 19, 2024
af386a0
Merge branch 'main' of github.com:RolnickLab/antenna into 387-add-top…
mihow Mar 6, 2025
e57f565
feat: add top species chart to project overview
mihow Mar 6, 2025
34f9195
fix: show average counts instead of cumulative
mihow Mar 6, 2025
c8c2445
chore: cleanup
mihow Mar 6, 2025
2a424c0
feat: show stats over the year
mihow Mar 6, 2025
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2 changes: 1 addition & 1 deletion ami/main/charts.py
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Original file line number Diff line number Diff line change
Expand Up @@ -269,7 +269,7 @@ def event_top_taxa(event_pk: int, top_n: int = 10):
.values("name")
# .annotate(num_detections=models.Count("occurrences__detections"))
.annotate(num_detections=models.Count("occurrences"))
.order_by("-num_detections")[:top_n]
.order_by("num_detections")[:top_n]
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Isn't this lowest to highest?

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Yes, you're right. I just tested out the chart by modifying the species count and made the corrected changes. Here's an example top species chart:
Screenshot 2024-09-18 at 9 51 26 AM

If top_n=1, then it looks like this:
Screenshot 2024-09-18 at 9 53 02 AM

Note, this is what the test data looks like which modified here.
Screenshot 2024-09-18 at 9 54 42 AM

@mihow Is the plot showing the correct data? I thought that the plot would show 2 occurrences of Vanessa atalanta and 1 occurrence of Vanessa itea?

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Thanks Vanessa,

The TEST_TAXA_CSV_DATA is for Taxon entries, not Occurrence entries. So adding duplicates there won't have the effect you are looking for.

The charts are showing which occurrences have been IDed to which Taxa. In the test data, you want to modify the number of occurrences that are generated for each taxon, rather than the taxonomy choices, if that makes sense?

Also if you make your self "is_staff" in the Django admin, then you can modify the occurrence IDs pretty quickly without regenerating. But I like both approaches (the test data should have different numbers of IDs for different species).

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I think I understand; where is the test data of the occurrences generated/modified? Based on my testing using the admin, the Top Species chart appears to work -- see my other comment below

)

if top_taxa:
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2 changes: 2 additions & 0 deletions ami/main/models.py
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Expand Up @@ -133,6 +133,8 @@ def summary_data(self):
if self.occurrences.exists():
plots.append(charts.detections_per_hour(project_pk=self.pk))
plots.append(charts.occurrences_accumulated(project_pk=self.pk))
# print(self.pk)
plots.append(charts.event_top_taxa(event_pk=self.pk))
else:
plots.append(charts.events_per_month(project_pk=self.pk))
# plots.append(charts.captures_per_month(project_pk=self.pk))
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1 change: 1 addition & 0 deletions ui/src/data-services/models/project.ts
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Expand Up @@ -12,6 +12,7 @@ interface SummaryData {
ticktext?: string[]
}
type: any
orientation: 'h' | 'v'
}

export class Project {
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7 changes: 6 additions & 1 deletion ui/src/pages/overview/summary/summary.tsx
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Expand Up @@ -7,7 +7,12 @@ export const Summary = ({ project }: { project: Project }) => (
<PlotGrid>
{project.summaryData.map((summary, index) => (
<Box key={index}>
<Plot title={summary.title} data={summary.data} type={summary.type} />
<Plot
title={summary.title}
data={summary.data}
orientation={summary.orientation}
type={summary.type}
/>
</Box>
))}
</PlotGrid>
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