[Do Not Merge] OOD Features #820
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✅ Deploy Preview for antenna-ood canceled.
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* feat: Added pgvector extension * feat: Added features field to the Classification model * changed taxon and detection to autocomplete fields in the ClassificationAdmin model * feat: added similar action to the ClassificationViewset * chore: changed features vector field name to features_2048 * chore: changed features vector field name to features_2048 * feat: read features vector from processing service ClassificationResponse and save it to Classification object * test: added tests for PGVector distance metrics * updated docker-compose.ci.yml to use the same postgres image * updated docker-compose.ci.yml to use the same postgres image as docker-compose.yml * updated docker-compose.ci.yml to use the same postgres image as docker-compose.yml * chore: add feature vectors to test ML backends --------- Authored-by: mohamedelabbas1996 <hack1996man@gmail.com>
* feat: save and display OOD score if available * feat: allow different field names in classification resp. and model * fix: ensure ood score is updated when saving bulk results * feat: update updated_at value for occurrences with new predictions * feat: add OOD scores to test ML backends
* feat: add fields for Taxon cover images and Fieldguide ID * feat: add cover image fields to Taxon model for the UI
* refactor: make related UI components more flexible * feat: update species view with reference images and example occurrence * feat: adjust species details view for print * feat: return last seen from API * feat: add cover image to taxa table and gallery view * layout: improve print mode in general * feat: allow printing of multiple pages * fix: handle undefined date for last detected * layout: prepare tweaks for unknown species scenario * fix: remove remaining dummy data * fix: handle undefined cover image
* feat: Added pgvector extension * feat: Added features field to the Classification model * changed taxon and detection to autocomplete fields in the ClassificationAdmin model * feat: added similar action to the ClassificationViewset * chore: changed features vector field name to features_2048 * chore: changed features vector field name to features_2048 * feat: read features vector from processing service ClassificationResponse and save it to Classification object * test: added tests for PGVector distance metrics * updated docker-compose.ci.yml to use the same postgres image * updated docker-compose.ci.yml to use the same postgres image as docker-compose.yml * updated docker-compose.ci.yml to use the same postgres image as docker-compose.yml * feat: Added support for clustering detections for source image collections * feat: Allowed triggering collection detections clustering from admin page * fix: show unobserved Taxa in view for now * fix: create & update occurrence determinations after clustering * feat: add unknown species filter to admin * fix: circular import * fix: update migration ordering * Integrated Agglomerative clustering * updated clustering request params * fixed Agglomerative clustering * fix: disable missing clustering algorithms * fix: syntax when creating algorithm entry * feat: command to create clustering job without starting it * feat: increase default batch size * fix: better algorithm name * feat: allow sorting by OOD score * feat: add unknown species and other fields to Taxon serializer * fix: remove missing field * fix: migration conflicts * feat: fields for investigating occurrence classifications in admin * fix: filter by feature extraction algorithm * chore: Used a serializer to handle job params instead of reading them directly from the request objects * set default ood threshold to 0.0 * test: added tests for clustering * chore: migration for new algorithm type * fix: remove cluster action in Event admin until its ready * chore: move algorithm selection to dedicated function * fix: update clustering tests and types * chore: remove external network config in processing services * feat: update GitHub workflows to run tests on other branches * fix: hide unobserved taxa by default. todo: add frontend filter to toggle this --------- Co-authored-by: Michael Bunsen <notbot@gmail.com>
* feat: management command for updating fields on existing Taxa from CSV * feat: try another title for example occurrence image * feat: allow manual filter for showing taxa without occurrences * feat: allow sorting by reference image for better demos
…nickLab/antenna into deployments/ood.antenna.insectai.org
* feat: generic ThresholdFilter for OOD and determination scores * docs: update openAPI schema docs with new filters for occurrence list
* feat: extend list of recent labels * fix: do not invalidate queries until all ids are saved --------- Co-authored-by: Anna Viklund <annamariaviklund@gmail.com>
* feat: cleanup code for occurrence determinations, add tests * feat: update occurrence best_detection on save * docs: add placeholder fields * fix: calculate OOD score from latest classifications only * feat: refactor occurrence determination updates to be more readable * chore: migrations for new occurrence & detection fields * feat: management command & migration for updating all existing * fix: add missing predictions() list for serializer * fix: reference to old cached property * fix: move main tests into new module directory * chore: save additional fields for a follow-up * fix: update determination tests * fix: split get_prediction and get_predictions, different use cases
* fix: make sure OOD reference image thumbnails are not cropped * fix: include temporary workaround for invalid cert on Fieldguide * style: present OOD score in UI and streamline how score details are presented * fix: remove station field until present * fix: remove sort by rank until working * feat: add OOD score threshold filter and remember preferences * fix: handle scores that are undefined or null * fix: update OOD score threshold * fix: remove temporary URL workaround
* chore: replace old taxa search with new component * feat: make it possible to suggest ID from inline popover * feat: make it possible to suggest ID in bulk * feat: sort occurrences to show recently IDed first --------- Co-authored-by: Michael Bunsen <notbot@gmail.com>
* feat: make it possible to rename unknown species from UI * feat: make it possible to edit taxon parent from UI
* feat: added support for tag creation for a given taxon * chore: moved Tag<->Taxon many2many to the Taxon model * feat: added the Tag admin model * feat: added custom assign_tags action to the TaxonViewSet to assign tags for a given taxon and return the assigned tags filtered by project * fixed formatting * merged migrations * feat: added tags to the Taxon admin model * feat: added global tags * added db migration * feat: show global tags if there is an active project * feat: added or based taxon filtering by tag_id * chore: renamed TaxonTagFilterBackend * fix: fixed filtering tags by project_id in the TaxonViewSet list * Add frontend support for taxa tags (#828) * feat: setup UI for taxon tags * feat: prepare UI controls for tag filtering * feat: hook up UI tags with backend * fix: update filter key from tag -> tag_id * fixed Taxon List tags column name * feat: added tags inverse filter * feat: return global tags with project tags * chore: reset tag migrations, add default tags * fix: remove invalid field in taxa list query * chore: add type hints for reverse relationships --------- Co-authored-by: Anna Viklund <annamariaviklund@gmail.com> Co-authored-by: Michael Bunsen <notbot@gmail.com>
* feat: add unknown species filter control to UI * feat: add backend support for unknown species filter * feat: fix missing parents in taxa list view --------- Co-authored-by: Michael Bunsen <notbot@gmail.com>
* feat: don't show placeholder scores from human identifications * feat: prioritize determinations from clustering, regardless of score * feat: method to calculate score of cluster points * feat: track more details about cluster members * fix: score calculation and display of classifications for clusters * feat: use common ancestor of predicted taxon for name & parent * feat: use any occurrence's best detection as fallback cover image * feat: update automatic naming * feat: fix missing parents in taxa list view * copy: cleanup auto generated taxa list name * feat: remove species name from cluster name, expand notes. * fix: calculation of determination score --------- Co-authored-by: Anna Viklund <annamariaviklund@gmail.com>
* feat: setup new filter control for unobserved * feat: add quick action to create new unknown species from UI * feat: add link to Django admin from species detail view * fix: check permissions before presenting create species button * copy: update "New unknown species" -> "Register new cluster" * feat: add date columns to species table
* feat: allow taxa to be saved with no project (global use) * feat: return global or per-project taxa & taxa lists * feat: use default queryset for taxa search, ensure active filter * fix: validation of project_id * feat: require project_id for taxa endpoints, note about permissions * feat: reusable field for cover image fallback field to all taxa endpoints * feat: pass project id to taxa search endpoint * feat: reset all existing taxa to be global * fix: add project_id to requests in taxa tests * fix: active project validation
* feat: present best determination score for taxa in UI * feat: add best score filter for taxa * feat: return best score in taxon details response * fix: add column settings support in taxa view
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This was referenced Sep 4, 2025
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A set of experimental features for the OOD project