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dtxl opened this issue May 31, 2025 · 11 comments
Closed

7 dependencies errored #337

dtxl opened this issue May 31, 2025 · 11 comments
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@dtxl
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dtxl commented May 31, 2025

Describe the bug 🐞

Julia 1.11.5, made the daily pkg> update

Error & Stacktrace ⚠️

The output is

    Updating `C:\Users\...\.julia\environments\v1.11\Project.toml`
⌃ [429524aa] ↓ Optim v1.12.0 ⇒ v1.11.0
    Updating `C:\Users\...\.julia\environments\v1.11\Manifest.toml`
⌃ [7227322d] ↓ BoundaryValueDiffEqAscher v1.6.0 ⇒ v1.4.0
⌃ [85d9eb09] ↓ BoundaryValueDiffEqFIRK v1.7.0 ⇒ v1.5.0
⌃ [1a22d4ce] ↓ BoundaryValueDiffEqMIRK v1.7.0 ⇒ v1.5.0
⌃ [9255f1d6] ↓ BoundaryValueDiffEqMIRKN v1.6.0 ⇒ v1.4.0
⌃ [ed55bfe0] ↓ BoundaryValueDiffEqShooting v1.7.0 ⇒ v1.5.0
⌃ [bcd4f6db] ↓ DelayDiffEq v5.53.1 ⇒ v5.52.0
⌃ [2b5f629d] ↓ DiffEqBase v6.175.0 ⇒ v6.174.0
  [a0c0ee7d] ↑ DifferentiationInterface v0.6.54 ⇒ v0.7.0
⌃ [d41bc354] ↓ NLSolversBase v7.9.1 ⇒ v7.8.3
⌃ [be0214bd] ↓ NonlinearSolveBase v1.12.0 ⇒ v1.8.0
⌃ [9a2c21bd] ↓ NonlinearSolveQuasiNewton v1.6.0 ⇒ v1.5.0
⌃ [429524aa] ↓ Optim v1.12.0 ⇒ v1.11.0
  [bca83a33] ↑ OptimizationBase v2.7.0 ⇒ v2.8.0
⌃ [6ad6398a] ↓ OrdinaryDiffEqBDF v1.5.1 ⇒ v1.3.0
⌃ [4302a76b] ↓ OrdinaryDiffEqDifferentiation v1.9.1 ⇒ v1.4.0
⌃ [5960d6e9] ↓ OrdinaryDiffEqFIRK v1.12.0 ⇒ v1.9.0
⌃ [127b3ac7] ↓ OrdinaryDiffEqNonlinearSolve v1.10.0 ⇒ v1.5.0
⌃ [43230ef6] ↓ OrdinaryDiffEqRosenbrock v1.10.1 ⇒ v1.8.0
  [65ce6f38] + PackageExtensionCompat v1.0.2
⌃ [0bca4576] ↓ SciMLBase v2.96.0 ⇒ v2.87.0
⌃ [19f34311] ↓ SciMLJacobianOperators v0.1.6 ⇒ v0.1.5
⌅ [c0aeaf25] ↓ SciMLOperators v0.4.0 ⇒ v0.3.13
  [47a9eef4] + SparseDiffTools v2.26.0
⌃ [789caeaf] ↓ StochasticDiffEq v6.80.0 ⇒ v6.79.0
  [19fa3120] + VertexSafeGraphs v0.2.0
        Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
Precompiling project...
  ✗ BoundaryValueDiffEqAscher
  ✗ BoundaryValueDiffEqFIRK
  ✗ BoundaryValueDiffEqMIRK
  ✗ BoundaryValueDiffEqMIRKN
  ✗ BoundaryValueDiffEqShooting
  ✗ BoundaryValueDiffEq
  ✗ DifferentialEquations
  106 dependencies successfully precompiled in 291 seconds. 481 already precompiled.
  7 dependencies errored.
  For a report of the errors see `julia> err`. To retry use `pkg> precompile`

The output of pkg> precompile is

Precompiling project...
  ✗ BoundaryValueDiffEqAscher
  ✗ BoundaryValueDiffEqFIRK
  ✗ BoundaryValueDiffEqMIRK
  ✗ BoundaryValueDiffEqMIRKN
  ✗ BoundaryValueDiffEqShooting
  ✗ BoundaryValueDiffEq
  ✗ DifferentialEquations
  0 dependencies successfully precompiled in 32 seconds. 587 already precompiled.

ERROR: The following 1 direct dependency failed to precompile:

DifferentialEquations

Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to "C:\\Users\\...\\.julia\\compiled\\v1.11\\DifferentialEquations\\jl_48A5.tmp".
WARNING: could not import BoundaryValueDiffEqCore.BoundaryValueDiffEqAlgorithm into BoundaryValueDiffEqAscher
WARNING: could not import BoundaryValueDiffEqCore.__sparse_jacobian_cache into BoundaryValueDiffEqAscher
ERROR: LoadError: UndefVarError: `BoundaryValueDiffEqAlgorithm` not defined in `BoundaryValueDiffEqAscher`
Stacktrace:
 [1] top-level scope
   @ C:\Users\...\.julia\packages\BoundaryValueDiffEqAscher\bxAAP\src\algorithms.jl:1
 [2] include(mod::Module, _path::String)
   @ Base .\Base.jl:557
 [3] include(x::String)
   @ BoundaryValueDiffEqAscher C:\Users\...\.julia\packages\BoundaryValueDiffEqAscher\bxAAP\src\BoundaryValueDiffEqAscher.jl:1
 [4] top-level scope
   @ C:\Users\...\.julia\packages\BoundaryValueDiffEqAscher\bxAAP\src\BoundaryValueDiffEqAscher.jl:29
 [5] include
   @ .\Base.jl:557 [inlined]
 [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
   @ Base .\loading.jl:2881
 [7] top-level scope
   @ stdin:6
in expression starting at C:\Users\...\.julia\packages\BoundaryValueDiffEqAscher\bxAAP\src\algorithms.jl:1
in expression starting at C:\Users\...\.julia\packages\BoundaryValueDiffEqAscher\bxAAP\src\BoundaryValueDiffEqAscher.jl:1
in expression starting at stdin:6
ERROR: LoadError: Failed to precompile BoundaryValueDiffEqAscher [7227322d-7511-4e07-9247-ad6ff830280e] to "C:\\Users\\...\\.julia\\compiled\\v1.11\\BoundaryValueDiffEqAscher\\jl_5E04.tmp".
Stacktrace:
  [1] error(s::String)
    @ Base .\error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base .\loading.jl:3174
  [3] (::Base.var"#1110#1111"{Base.PkgId})()
    @ Base .\loading.jl:2579
  [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile C:\Users\...\AppData\Local\Programs\Julia-1.11.5\share\julia\stdlib\v1.11\FileWatching\src\pidfile.jl:95
  [5] #mkpidlock#6
    @ C:\Users\...\AppData\Local\Programs\Julia-1.11.5\share\julia\stdlib\v1.11\FileWatching\src\pidfile.jl:90 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile C:\Users\...\AppData\Local\Programs\Julia-1.11.5\share\julia\stdlib\v1.11\FileWatching\src\pidfile.jl:116
  [7] #invokelatest#2
    @ .\essentials.jl:1057 [inlined]
  [8] invokelatest
    @ .\essentials.jl:1052 [inlined]
  [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base .\loading.jl:3698
 [10] maybe_cachefile_lock
    @ .\loading.jl:3695 [inlined]
 [11] _require(pkg::Base.PkgId, env::String)
    @ Base .\loading.jl:2565
 [12] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base .\loading.jl:2388
 [13] #invoke_in_world#3
    @ .\essentials.jl:1089 [inlined]
 [14] invoke_in_world
    @ .\essentials.jl:1086 [inlined]
 [15] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base .\loading.jl:2375
 [16] macro expansion
    @ .\loading.jl:2314 [inlined]
 [17] macro expansion
    @ .\lock.jl:273 [inlined]
 [18] __require(into::Module, mod::Symbol)
    @ Base .\loading.jl:2271
 [19] #invoke_in_world#3
    @ .\essentials.jl:1089 [inlined]
 [20] invoke_in_world
    @ .\essentials.jl:1086 [inlined]
 [21] require(into::Module, mod::Symbol)
    @ Base .\loading.jl:2260
 [22] include
    @ .\Base.jl:557 [inlined]
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base .\loading.jl:2881
 [24] top-level scope
    @ stdin:6
in expression starting at C:\Users\...\.julia\packages\BoundaryValueDiffEq\6TAlC\src\BoundaryValueDiffEq.jl:1
in expression starting at stdin:6
ERROR: LoadError: Failed to precompile BoundaryValueDiffEq [764a87c0-6b3e-53db-9096-fe964310641d] to "C:\\Users\\...\\.julia\\compiled\\v1.11\\BoundaryValueDiffEq\\jl_5CCB.tmp".
Stacktrace:
  [1] error(s::String)
    @ Base .\error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
    @ Base .\loading.jl:3174
  [3] (::Base.var"#1110#1111"{Base.PkgId})()
    @ Base .\loading.jl:2579
  [4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})
    @ FileWatching.Pidfile C:\Users\...\AppData\Local\Programs\Julia-1.11.5\share\julia\stdlib\v1.11\FileWatching\src\pidfile.jl:95
  [5] #mkpidlock#6
    @ C:\Users\...\AppData\Local\Programs\Julia-1.11.5\share\julia\stdlib\v1.11\FileWatching\src\pidfile.jl:90 [inlined]
  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})
    @ FileWatching.Pidfile C:\Users\...\AppData\Local\Programs\Julia-1.11.5\share\julia\stdlib\v1.11\FileWatching\src\pidfile.jl:116
  [7] #invokelatest#2
    @ .\essentials.jl:1057 [inlined]
  [8] invokelatest
    @ .\essentials.jl:1052 [inlined]
  [9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
    @ Base .\loading.jl:3698
 [10] maybe_cachefile_lock
    @ .\loading.jl:3695 [inlined]
 [11] _require(pkg::Base.PkgId, env::String)
    @ Base .\loading.jl:2565
 [12] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base .\loading.jl:2388
 [13] #invoke_in_world#3
    @ .\essentials.jl:1089 [inlined]
 [14] invoke_in_world
    @ .\essentials.jl:1086 [inlined]
 [15] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base .\loading.jl:2375
 [16] macro expansion
    @ .\loading.jl:2314 [inlined]
 [17] macro expansion
    @ .\lock.jl:273 [inlined]
 [18] __require(into::Module, mod::Symbol)
    @ Base .\loading.jl:2271
 [19] #invoke_in_world#3
    @ .\essentials.jl:1089 [inlined]
 [20] invoke_in_world
    @ .\essentials.jl:1086 [inlined]
 [21] require(into::Module, mod::Symbol)
    @ Base .\loading.jl:2260
 [22] include
    @ .\Base.jl:557 [inlined]
 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base .\loading.jl:2881
 [24] top-level scope
    @ stdin:6
in expression starting at C:\Users\...\.julia\packages\DifferentialEquations\eQbP8\src\DifferentialEquations.jl:1
in expression starting at stdin:
@dtxl dtxl added the bug label May 31, 2025
@ChrisRackauckas
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SparseDiffTools.jl was deprecated and should be removed from that list. Try that and try updating?

@ChrisRackauckas ChrisRackauckas transferred this issue from SciML/Optimization.jl May 31, 2025
@dtxl
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dtxl commented May 31, 2025

I'm not sure what it means to remove SparseDiffTools.jl from that list, I don't use it. I installed the packages I need from scratch again. When installing pkg> add Optimization the process ends with

[7f7a1694] + Optimization v4.3.0
Updating C:\Users\lothomas\.julia\environments\v1.11\Manifest.toml
⌃ [7227322d] ↓ BoundaryValueDiffEqAscher v1.6.0 ⇒ v1.4.0
⌃ [85d9eb09] ↓ BoundaryValueDiffEqFIRK v1.7.0 ⇒ v1.5.0
⌃ [1a22d4ce] ↓ BoundaryValueDiffEqMIRK v1.7.0 ⇒ v1.5.0
⌃ [9255f1d6] ↓ BoundaryValueDiffEqMIRKN v1.6.0 ⇒ v1.4.0
⌃ [ed55bfe0] ↓ BoundaryValueDiffEqShooting v1.7.0 ⇒ v1.5.0
[88cd18e8] + ConsoleProgressMonitor v0.1.2
⌃ [bcd4f6db] ↓ DelayDiffEq v5.53.1 ⇒ v5.52.0
⌃ [2b5f629d] ↓ DiffEqBase v6.175.0 ⇒ v6.174.0
[a0c0ee7d] ↑ DifferentiationInterface v0.6.54 ⇒ v0.7.0
⌅ [f6369f11] ↓ ForwardDiff v1.0.1 ⇒ v0.10.38
[5be7bae1] + LBFGSB v0.4.1
[1d6d02ad] + LeftChildRightSiblingTrees v0.2.0
[e6f89c97] + LoggingExtras v1.1.0
⌃ [d41bc354] ↓ NLSolversBase v7.9.1 ⇒ v7.8.3
⌃ [be0214bd] ↓ NonlinearSolveBase v1.12.0 ⇒ v1.8.0
⌃ [9a2c21bd] ↓ NonlinearSolveQuasiNewton v1.6.0 ⇒ v1.5.0
⌃ [429524aa] ↓ Optim v1.12.0 ⇒ v1.11.0
[7f7a1694] + Optimization v4.3.0
[bca83a33] + OptimizationBase v2.8.0
⌃ [6ad6398a] ↓ OrdinaryDiffEqBDF v1.5.1 ⇒ v1.3.0
⌃ [4302a76b] ↓ OrdinaryDiffEqDifferentiation v1.9.1 ⇒ v1.4.0
⌃ [5960d6e9] ↓ OrdinaryDiffEqFIRK v1.12.0 ⇒ v1.9.0
⌃ [127b3ac7] ↓ OrdinaryDiffEqNonlinearSolve v1.10.0 ⇒ v1.5.0
⌃ [43230ef6] ↓ OrdinaryDiffEqRosenbrock v1.10.1 ⇒ v1.8.0
[65ce6f38] + PackageExtensionCompat v1.0.2
[33c8b6b6] + ProgressLogging v0.1.4
⌃ [0bca4576] ↓ SciMLBase v2.96.0 ⇒ v2.87.0
⌃ [19f34311] ↓ SciMLJacobianOperators v0.1.6 ⇒ v0.1.5
⌅ [c0aeaf25] ↓ SciMLOperators v1.3.0 ⇒ v0.3.13
[47a9eef4] + SparseDiffTools v2.26.0
⌃ [789caeaf] ↓ StochasticDiffEq v6.80.0 ⇒ v6.79.0
[5d786b92] + TerminalLoggers v0.1.7
[19fa3120] + VertexSafeGraphs v0.2.0
[81d17ec3] + L_BFGS_B_jll v3.0.1+0
Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use status --outdated -m
Precompiling project...
✗ BoundaryValueDiffEqFIRK
✗ BoundaryValueDiffEqMIRKN
✗ BoundaryValueDiffEqMIRK
✗ BoundaryValueDiffEqAscher
✗ BoundaryValueDiffEqShooting
✗ BoundaryValueDiffEq
✗ DifferentialEquations
120 dependencies successfully precompiled in 326 seconds. 309 already precompiled.
7 dependencies errored.
For a report of the errors see julia> err. To retry use pkg> precompile

@ErikQQY
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ErikQQY commented May 31, 2025

I installed the packages I need from scratch again

Could you share the packages you installed before installing Optimization.jl? For example, pkg> status.

@dtxl
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dtxl commented May 31, 2025

Of course, the packages are

[336ed68f] CSV v0.10.15
[a93c6f00] DataFrames v1.7.0
[8bb1440f] DelimitedFiles v1.9.1
[0c46a032] DifferentialEquations v7.16.1
[31c24e10] Distributions v0.25.120
⌅ [f6369f11] ForwardDiff v0.10.38
[50e95529] GeoStatsSolvers v0.7.16
[d3d80556] LineSearches v7.3.0
[4345ca2d] Loess v0.6.4
[bac558e1] OrderedCollections v1.8.1
[1dea7af3] OrdinaryDiffEq v6.98.0
[10745b16] Statistics v1.11.1
[2913bbd2] StatsBase v0.34.5
[bd369af6] Tables v1.12.0
[ade2ca70] Dates v1.11.0
[8ba89e20] Distributed v1.11.0
[37e2e46d] LinearAlgebra v1.11.0
[9a3f8284] Random v1.11.0

@ErikQQY
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ErikQQY commented May 31, 2025 •
edited
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From local testing, it seems the problem is that OptimizationBase@2.8.0 has a strict compat for DifferentiationInterface@v7, both OrdinaryDiffEq and BoundaryValueDiffEq are affected. @ChrisRackauckas

This was referenced May 31, 2025
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@dtxl
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dtxl commented Jun 7, 2025

The error is now

  Updating registry at `~/.julia/registries/General.toml`

Installed OrdinaryDiffEqRosenbrock ────── v1.11.0
Installed BoundaryValueDiffEqMIRKN ────── v1.6.1
Installed BoundaryValueDiffEqMIRK ─────── v1.5.0
Installed BoundaryValueDiffEqFIRK ─────── v1.5.0
Installed FFTW ────────────────────────── v1.9.0
Installed SciMLBase ───────────────────── v2.97.0
Installed LinearSolve ─────────────────── v3.17.0
Installed Graphs ──────────────────────── v1.13.0
Installed EnzymeCore ──────────────────── v0.8.11
Installed Mustache ────────────────────── v1.0.21
Installed DocStringExtensions ─────────── v0.9.5
Installed SparseConnectivityTracer ────── v0.6.19
Installed JumpProcesses ───────────────── v9.16.0
Installed BoundaryValueDiffEqShooting ─── v1.5.0
Installed OrdinaryDiffEqBDF ───────────── v1.6.0
Installed DifferentiationInterface ────── v0.7.0
Installed OrdinaryDiffEqDifferentiation ─ v1.10.0
Installed Tables ──────────────────────── v1.12.1
Installed BoundaryValueDiffEqAscher ───── v1.6.1
Installed UnitfulLatexify ─────────────── v1.7.0
Installed Optim ───────────────────────── v1.11.0
Installed OptimizationBase ────────────── v2.8.0
Updating ~/.julia/environments/v1.11/Project.toml
⌃ [429524aa] ↓ Optim v1.12.0 ⇒ v1.11.0
[bd369af6] ↑ Tables v1.12.0 ⇒ v1.12.1
Updating ~/.julia/environments/v1.11/Manifest.toml
[7227322d] ↑ BoundaryValueDiffEqAscher v1.6.0 ⇒ v1.6.1
⌃ [85d9eb09] ↓ BoundaryValueDiffEqFIRK v1.7.0 ⇒ v1.5.0
⌃ [1a22d4ce] ↓ BoundaryValueDiffEqMIRK v1.7.0 ⇒ v1.5.0
[9255f1d6] ↑ BoundaryValueDiffEqMIRKN v1.6.0 ⇒ v1.6.1
⌃ [ed55bfe0] ↓ BoundaryValueDiffEqShooting v1.7.0 ⇒ v1.5.0
[a0c0ee7d] ↑ DifferentiationInterface v0.6.54 ⇒ v0.7.0
[ffbed154] ↑ DocStringExtensions v0.9.4 ⇒ v0.9.5
[f151be2c] ↑ EnzymeCore v0.8.9 ⇒ v0.8.11
[7a1cc6ca] ↑ FFTW v1.8.1 ⇒ v1.9.0
[86223c79] ↑ Graphs v1.12.1 ⇒ v1.13.0
[ccbc3e58] ↑ JumpProcesses v9.14.3 ⇒ v9.16.0
[7ed4a6bd] ↑ LinearSolve v3.16.0 ⇒ v3.17.0
[ffc61752] ↑ Mustache v1.0.20 ⇒ v1.0.21
⌃ [d41bc354] ↓ NLSolversBase v7.9.1 ⇒ v7.8.3
⌃ [429524aa] ↓ Optim v1.12.0 ⇒ v1.11.0
[bca83a33] ↑ OptimizationBase v2.6.0 ⇒ v2.8.0
[6ad6398a] ↑ OrdinaryDiffEqBDF v1.5.1 ⇒ v1.6.0
[4302a76b] ↑ OrdinaryDiffEqDifferentiation v1.9.1 ⇒ v1.10.0
[43230ef6] ↑ OrdinaryDiffEqRosenbrock v1.10.1 ⇒ v1.11.0
[65ce6f38] + PackageExtensionCompat v1.0.2
[0bca4576] ↑ SciMLBase v2.96.0 ⇒ v2.97.0
[9f842d2f] ↑ SparseConnectivityTracer v0.6.18 ⇒ v0.6.19
[47a9eef4] + SparseDiffTools v2.26.0
[bd369af6] ↑ Tables v1.12.0 ⇒ v1.12.1
[45397f5d] ↑ UnitfulLatexify v1.6.4 ⇒ v1.7.0
[19fa3120] + VertexSafeGraphs v0.2.0
Info Packages marked with ⌃ have new versions available and may be upgradable.
Precompiling project...
✗ BoundaryValueDiffEqFIRK
✗ BoundaryValueDiffEqMIRK
✗ BoundaryValueDiffEqShooting
✗ BoundaryValueDiffEq
✗ DifferentialEquations
188 dependencies successfully precompiled in 76 seconds. 412 already precompiled.
5 dependencies errored.
For a report of the errors see julia> err. To retry use pkg> precompile
Info We haven't cleaned this depot up for a bit, running Pkg.gc()...
Active manifest files: 4 found
Active artifact files: 111 found
Active scratchspaces: 2 found
Deleted 28 package installations (45.005 MiB)

The output of pkg> precompile is

Precompiling project...
✗ BoundaryValueDiffEqFIRK
✗ BoundaryValueDiffEqMIRK
✗ BoundaryValueDiffEqShooting
✗ BoundaryValueDiffEq
✗ DifferentialEquations
0 dependencies successfully precompiled in 12 seconds. 600 already precompiled.

ERROR: The following 1 direct dependency failed to precompile:

DifferentialEquations

Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to "/Users/.../.julia/compiled/v1.11/DifferentialEquations/jl_H1oOS7".
WARNING: could not import BoundaryValueDiffEqCore.BoundaryValueDiffEqAlgorithm into BoundaryValueDiffEqFIRK
WARNING: could not import BoundaryValueDiffEqCore.__sparse_jacobian_cache into BoundaryValueDiffEqFIRK
WARNING: could not import BoundaryValueDiffEqCore.__sparsity_detection_alg into BoundaryValueDiffEqFIRK
WARNING: could not import BoundaryValueDiffEqCore.__append_similar! into BoundaryValueDiffEqFIRK
WARNING: could not import BoundaryValueDiffEqCore.__similar into BoundaryValueDiffEqFIRK
WARNING: could not import BoundaryValueDiffEqCore.ColoredMatrix into BoundaryValueDiffEqFIRK
WARNING: could not import BoundaryValueDiffEqCore.MaybeDiffCache into BoundaryValueDiffEqFIRK
ERROR: LoadError: UndefVarError: __append_similar! not defined in BoundaryValueDiffEqCore
Stacktrace:
[1] getproperty(x::Module, f::Symbol)
@ Base ./Base.jl:42
[2] top-level scope
@ ~/.julia/packages/BoundaryValueDiffEqFIRK/KTJvZ/src/utils.jl:1
[3] include(mod::Module, _path::String)
@ Base ./Base.jl:557
[4] include(x::String)
@ BoundaryValueDiffEqFIRK ~/.julia/packages/BoundaryValueDiffEqFIRK/KTJvZ/src/BoundaryValueDiffEqFIRK.jl:1
[5] top-level scope
@ ~/.julia/packages/BoundaryValueDiffEqFIRK/KTJvZ/src/BoundaryValueDiffEqFIRK.jl:48
[6] include
@ ./Base.jl:557 [inlined]
[7] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2881
[8] top-level scope
@ stdin:6
in expression starting at /Users/tjl/.julia/packages/BoundaryValueDiffEqFIRK/KTJvZ/src/utils.jl:1
in expression starting at /Users/tjl/.julia/packages/BoundaryValueDiffEqFIRK/KTJvZ/src/BoundaryValueDiffEqFIRK.jl:1
in expression starting at stdin:6
ERROR: LoadError: Failed to precompile BoundaryValueDiffEqFIRK [85d9eb09-370e-4000-bb32-543851f73618] to "/Users/.../.julia/compiled/v1.11/BoundaryValueDiffEqFIRK/jl_dKLeZt".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3174
[3] (::Base.var"#1110#1111"{Base.PkgId})()
@ Base ./loading.jl:2579
[4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95
[5] #mkpidlock#6
@ /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@kwargs{stale_age::Int64})
@ FileWatching.Pidfile /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116
[7] #invokelatest#2
@ ./essentials.jl:1057 [inlined]
[8] invokelatest
@ ./essentials.jl:1052 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3698
[10] maybe_cachefile_lock
@ ./loading.jl:3695 [inlined]
[11] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2565
[12] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2388
[13] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[14] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[15] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2375
[16] macro expansion
@ ./loading.jl:2314 [inlined]
[17] macro expansion
@ ./lock.jl:273 [inlined]
[18] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2271
[19] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[20] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[21] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2260
[22] include
@ ./Base.jl:557 [inlined]
[23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2881
[24] top-level scope
@ stdin:6
in expression starting at /Users/tjl/.julia/packages/BoundaryValueDiffEq/6TAlC/src/BoundaryValueDiffEq.jl:1
in expression starting at stdin:6
ERROR: LoadError: Failed to precompile BoundaryValueDiffEq [764a87c0-6b3e-53db-9096-fe964310641d] to "/Users/.../.julia/compiled/v1.11/BoundaryValueDiffEq/jl_ZzeGMi".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3174
[3] (::Base.var"#1110#1111"{Base.PkgId})()
@ Base ./loading.jl:2579
[4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95
[5] #mkpidlock#6
@ /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@kwargs{stale_age::Int64})
@ FileWatching.Pidfile /Applications/Julia-1.11.app/Contents/Resources/julia/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116
[7] #invokelatest#2
@ ./essentials.jl:1057 [inlined]
[8] invokelatest
@ ./essentials.jl:1052 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3698
[10] maybe_cachefile_lock
@ ./loading.jl:3695 [inlined]
[11] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2565
[12] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2388
[13] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[14] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[15] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2375
[16] macro expansion
@ ./loading.jl:2314 [inlined]
[17] macro expansion
@ ./lock.jl:273 [inlined]
[18] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2271
[19] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[20] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[21] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2260
[22] include
@ ./Base.jl:557 [inlined]
[23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
@ Base ./loading.jl:2881
[24] top-level scope
@ stdin:6
in expression starting at /Users/tjl/.julia/packages/DifferentialEquations/eQbP8/src/DifferentialEquations.jl:1
in expression starting at stdin:

@ChrisRackauckas
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Remove Optim?

@dtxl
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dtxl commented Jun 7, 2025

Installing Optimization before OrdinaryDiffEq and DifferentialEquations works. But with pkg> update the error appears again. To remove Optim has no effect.

@ChrisRackauckas
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Do ]why BoundaryValueDiffEqShooting

@dtxl
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dtxl commented Jun 8, 2025

pkg> why BoundaryValueDiffEqShooting
DifferentialEquations → BoundaryValueDiffEq → BoundaryValueDiffEqShooting

@ChrisRackauckas
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If you update now it should be fine.

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@ChrisRackauckas @dtxl @ErikQQY