Skip to content

Commit 181e622

Browse files
TorkelEisaacsas
andcommitted
Update docs/src/catalyst_applications/jump_simulation_performance.md
Co-authored-by: Sam Isaacson <isaacsas@users.noreply.github.com>
1 parent 9d8aba0 commit 181e622

File tree

1 file changed

+1
-1
lines changed

1 file changed

+1
-1
lines changed

docs/src/catalyst_applications/jump_simulation_performance.md

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -114,7 +114,7 @@ dprob = DiscreteProblem(rn, u0, tspan, ps)
114114
jprob = JumpProblem(rn, dprob, Direct())
115115
nothing # hide
116116
```
117-
Here (as throughout most of Catalyst's documentation) we have used the `Direct()` solver (which corresponds to Gillespie's original direct method [^2][^3], also called the *stochastic simulation algorithm*). This method was originally published in 1976, and since then, many additional methods for performing jump simulations of CRN models have been developed.
117+
Here (as throughout most of Catalyst's documentation) we have used the `Direct()` SSA solver (which corresponds to Gillespie's original direct method [^2][^3]). This method was originally published in 1976, and since then, many additional methods for simulating stochastic chemical kinetics models have been developed.
118118

119119
Gillespie's direct method will, after a jump has been performed, recompute the rates of *all* possible jumps in the system. This is typically not required. E.g. consider the following system:
120120
```@example jump_simulation_performance_2

0 commit comments

Comments
 (0)